Synthetic mRNA capping

• Fabian Muttach,
• Nils Muthmann and
• Andrea Rentmeister

Beilstein J. Org. Chem. 2017, 13, 2819–2832, doi:10.3762/bjoc.13.274

• N7-position or a combination of both. (A) Functional moieties such as alkynes and azides can be enzymatically transferred to the N2-position using GlaTgs-Var. or N7-position using Ecm1 [88][89][90][91]. While transfer efficiencies decrease with increasing sterical demand when using GlaTgs-Var

CF₃SO₂X (X = Na, Cl) as reagents for trifluoromethylation, trifluoromethylsulfenyl-, -sulfinyl- and -sulfonylation. Part 1: Use of CF₃SO₂Na

• Hélène Guyon,
• Hélène Chachignon and
• Dominique Cahard

Beilstein J. Org. Chem. 2017, 13, 2764–2799, doi:10.3762/bjoc.13.272

• using 18O2; no reaction occurred under N2 instead of O2; K2S2O8 rather than O2 served as initiator; the radical CF3SO2• could either extrude SO2 to CF3• or react with O2 to re-initiate the radical chain process (Scheme 7). Vinyl azides were used by Liu and co-workers as precursors of α

• -trifluoromethylated ketones by reaction of CF3SO2Na under photoredox catalysis. The substrate scope was broad and the reaction proceeded with high functional group tolerance; indeed, aryl-, alkyl-, hetero-functionalised terminal as well as non-terminal vinyl azides 15 were compatible with the reaction conditions. In

A concise flow synthesis of indole-3-carboxylic ester and its derivatisation to an auxin mimic

• Marcus Baumann,
• Ian R. Baxendale and
• Fabien Deplante

Beilstein J. Org. Chem. 2017, 13, 2549–2560, doi:10.3762/bjoc.13.251

• new entries into these valuable structures [6]. However, common to the majority of these indole syntheses is the use of hazardous entities such as hydrazines (Fischer), diazonium species (Japp–Klingemann) or azides (Hemetsberger–Knittel) or the necessity to construct specifically functionalised

Asymmetric synthesis of propargylamines as amino acid surrogates in peptidomimetics

• Matthias Wünsch,
• David Schröder,
• Tanja Fröhr,
• Lisa Teichmann,
• Sebastian Hedwig,
• Nils Janson,
• Clara Belu,
• Jasmin Simon,
• Shari Heidemeyer,
• Philipp Holtkamp,
• Jens Rudlof,
• Lennard Klemme,
• Alessa Hinzmann,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2017, 13, 2428–2441, doi:10.3762/bjoc.13.240

• intriguing versatility as building blocks in organic and medicinal chemistry, as their reactivity is unique. Their chemistry involves several highly selective reactions, e.g., [3 + 2] cycloadditions with azides and isoelectronic functional groups (among them the copper or ruthenium-catalyzed azide–alkyne

Synthesis, effect of substituents on the regiochemistry and equilibrium studies of tetrazolo[1,5-a]pyrimidine/2-azidopyrimidines

• Elisandra Scapin,
• Paulo R. S. Salbego,
• Caroline R. Bender,
• Alexandre R. Meyer,
• Anderson B. Pagliari,
• Tainára Orlando,
• Geórgia C. Zimmer,
• Clarissa P. Frizzo,
• Helio G. Bonacorso,
• Nilo Zanatta and
• Marcos A. P. Martins

Beilstein J. Org. Chem. 2017, 13, 2396–2407, doi:10.3762/bjoc.13.237

• reaction conditions and short reaction times, the advantage of CuAAC is the formation of 1,2,3-triazoles-1,4-disubstituted in a highly regioselective manner [41]. Recently, Cornec et al. [44] synthesized 4,6-dimethyl-2-(4-aryl-1H-1,2,3-triazol-1-yl)pyrimidines from azides using copper salts. The reaction

• solution (CDCl3 and DMSO-d6), while azide species 7a–h were observed in the solid state. Notwithstanding, although only the tetrazoles were observed for compounds 6a–c in solution, the conditions at which the compounds were introduced can induce the equilibrium to favor the presence of the azides (e.g

Solvent-free copper-catalyzed click chemistry for the synthesis of N-heterocyclic hybrids based on quinoline and 1,2,3-triazole

• Martina Tireli,
• Silvija Maračić,
• Stipe Lukin,
• Marina Juribašić Kulcsár,
• Dijana Žilić,
• Mario Cetina,
• Ivan Halasz,
• Silvana Raić-Malić and
• Krunoslav Užarević

Beilstein J. Org. Chem. 2017, 13, 2352–2363, doi:10.3762/bjoc.13.232

• states for the mechanochemical CuAAC reaction of target quinoline derivatives and p-substituted phenyl azides. We have also investigated the effect of the p-substituent in the azide on the reaction progress and yields. Direct monitoring by in situ Raman spectroscopy was used to gain an insight into the

• methine C-3 protons displayed in a 1H,1H-NOESY spectrum of 4 (Figure S10 in Supporting Information File 1). Compound 4 was then submitted to Cu(I)-catalyzed 1,3-dipolar cycloaddition with selected halogen-substituted and non-substituted aromatic azides to yield target N-heterocyclic hybrids 5–8 containing

• raised by application of method 1a* for the p-chloro- (from 21 to 77%, Table 1, entry 1) and p-bromophenyl azides (from 45 to 76%, Table 1, entry 2). On the other hand, the reaction with the non-substituted azide in all solution procedures, even by method 1a*, gave compound 8 in low yield (5–21%, Table 1

Mechanochemical synthesis of small organic molecules

• Tapas Kumar Achar,
• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2017, 13, 1907–1931, doi:10.3762/bjoc.13.186

• the metal catalyst from rhodium to iridium. In 2016, using an Ir(III) catalyst an unprecedented ortho-selective Csp2–H bond amidation of benzamides with sulfonyl azides as the amide source was done under solvent-free ball mill conditions (Scheme 51) [183]. They could also isolate cyclic iridium

Strategies toward protecting group-free glycosylation through selective activation of the anomeric center

• A. Michael Downey and
• Michal Hocek

Beilstein J. Org. Chem. 2017, 13, 1239–1279, doi:10.3762/bjoc.13.123

• transglycosylations are available in a review by Nogushi, et al. [70]. 4.1.2 Synthesis of glycosyl azides, dithiocarbamates, and thiols: Shoda and colleagues have also shown that when using similar conditions to those described above in the presence of certain nucleophiles glycosyl azides [73], dithiocarbamates [74

• conditions were feasible for the synthesis of glycosyl azides which are highly useful precursors for N-linked glycans [95] or Cu-catalyzed cycloadditions with alkynes (as shown above) [85]. By using tetrabutylammonium chloride and an amine base the highly reactive chlorinated intermediate forms that can be

Continuous-flow processes for the catalytic partial hydrogenation reaction of alkynes

• Carmen Moreno-Marrodan,
• Francesca Liguori and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2017, 13, 734–754, doi:10.3762/bjoc.13.73

• issues owing to many potential side reactions, particularly in relation to chemoselectivity, i.e., over-hydrogenation of alkenes to alkanes [44][45], resistance of other functional groups (ketones [46][47], amines [48][49], azides [50]), regioselectivity [51][52] , isomerization [53][54] and

Ultrasound-promoted organocatalytic enamine–azide [3 + 2] cycloaddition reactions for the synthesis of ((arylselanyl)phenyl-1H-1,2,3-triazol-4-yl)ketones

• Gabriel P. Costa,
• Natália Seus,
• Juliano A. Roehrs,
• Raquel G. Jacob,
• Ricardo F. Schumacher,
• Thiago Barcellos,
• Rafael Luque and
• Diego Alves

Beilstein J. Org. Chem. 2017, 13, 694–702, doi:10.3762/bjoc.13.68

• most attractive way for their preparation is the thermal 1,3-dipolar cycloaddition of alkynes and azides, introduced by Huisgen which usually gives rise to a mixture of 1,4 and 1,5-isomers [16][17][18][19]. More recently, transition metal catalysts based on copper, ruthenium, silver and iridium salts

• carbonyl compounds could successfully generate an enamine or an enolate, and these species react as dipolarophiles with organic azides in organocatalyzed 1,3-dipolar cycloadditions. Our research group has demonstrated β-enamine–azide cycloaddition reactions for the synthesis of selenium-functionalized

• -amides with a range of substituted aryl azides providing and efficient access to new N-aryl-1,2,3-triazoyl carboxamides in good to excellent yields and short reaction times of [75]. However, to the best of our knowledge, the use of sonochemistry to synthesize complex selenium-functionalized 1,2,3

Isoxazole derivatives as new nitric oxide elicitors in plants

• Anca Oancea,
• Emilian Georgescu,
• Florentina Georgescu,
• Alina Nicolescu,
• Elena Iulia Oprita,
• Catalina Tudora,
• Lucian Vladulescu,
• Marius-Constantin Vladulescu,
• Florin Oancea and
• Calin Deleanu

Beilstein J. Org. Chem. 2017, 13, 659–664, doi:10.3762/bjoc.13.65

• -deficient alkene led to the intermediate bromoisoxazoline from which, by loss of HBr, a 3,5-disubstituted isoxazole derivative is formed as major regioisomer [34]. Based on the copper(I)-catalyzed click reactions of organic azides with terminal acetylenes [35], different copper(I)-catalyzed synthetic

Pd- and Cu-catalyzed approaches in the syntheses of new cholane aminoanthraquinone pincer-like ligands

• Nikolay V. Lukashev,
• Gennadii A. Grabovyi,
• Dmitry A. Erzunov,
• Alexey V. Kazantsev,
• Gennadij V. Latyshev,
• Alexei D. Averin and
• Irina P. Beletskaya.

Beilstein J. Org. Chem. 2017, 13, 564–570, doi:10.3762/bjoc.13.55

• -catalyzed reactions were applied for the modification of bile acids – cross-coupling [28][29] (Scheme 1) and Cu(I)-catalyzed cycloaddition of azides to alkynes (Figure 1) [11][16][30][31][32]. We developed [33][34][35] a convenient technique for the synthesis of bile acids containing dimeric compounds and

Contribution of microreactor technology and flow chemistry to the development of green and sustainable synthesis

• Flavio Fanelli,
• Giovanna Parisi,
• Leonardo Degennaro and
• Renzo Luisi

Beilstein J. Org. Chem. 2017, 13, 520–542, doi:10.3762/bjoc.13.51

• " for safety reasons, such as those involving diazo compounds, hydrazine, azides, phosgene, cyanides and other hazardous chemicals could be performed with relatively low risk using flow technology [72][73][74][75][76]. Several research groups investigated this aspect, as highlighted by several available

Solid-phase enrichment and analysis of electrophilic natural products

• Frank Wesche,
• Yue He and
• Helge B. Bode

Beilstein J. Org. Chem. 2017, 13, 405–409, doi:10.3762/bjoc.13.43

• entomopathogenic Photorhabdus bacteria. Keywords: azides; click chemistry; enrichment; electrophilic natural products; epoxides; glidobactin; Photorhabdus; stilbenes; Introduction Microorganisms are a major source for novel natural products and the subsequent development of new drugs for all kinds of

• dehydroalanine [6][7], ketones, aldehydes [8][9], carboxylic acids [8][9], amines [8][9][10], thiols [8][9], alcohols [11], epoxides [12], terminal alkynes [13][14] and azides [15] can be targeted to introduce a label. Such labels might increase the visibility in UV or MS detection in liquid chromatography

• ), Scheme 1) is such a resin able to react with a broad range of azides [15]. Thus, the metabolic fate of azide-containing biosynthesis intermediates or building blocks can be studied and natural products containing these azides can be identified. Herein we describe the application of the CARR enrichment

A postsynthetically 2’-“clickable” uridine with arabino configuration and its application for fluorescent labeling and imaging of DNA

• Heidi-Kristin Walter,
• Bettina Olshausen,
• Ute Schepers and
• Hans-Achim Wagenknecht

Beilstein J. Org. Chem. 2017, 13, 127–137, doi:10.3762/bjoc.13.16

• cells. Keywords: dyes; fluorescence; nucleic acid; oligonucleotide; Introduction The “click”-type reactions [1], in particular the 1,3-dipolar cycloaddition between alkynes and azides (CuAAC) is a broadly applied strategy for postsynthetic oligonucleotide modification since both reactive groups are

• cannot only be applied for conventional postsynthetic oligonucleotide modification in solution but also on solid phase [11] and for the introduction of multiple postsynthetic modifications [12]. The azide groups for CuAAC are typically placed onto the fluorescent dyes since azides are not compatible with

• donors in the energy transfer-based DNA systems (vide infra). The corresponding dye azides were synthesized as previously described [19][23][24]. The modified double strands (ds) DNA2aD1 to DNA2aD4 were compared with their structural counterpart among the duplexes DNA2rD1 to DNA2rD4 with respect to their

Extrusion – back to the future: Using an established technique to reform automated chemical synthesis

• Deborah E. Crawford

Beilstein J. Org. Chem. 2017, 13, 65–75, doi:10.3762/bjoc.13.9

• materials can be used in the extruder, through the use of s-Buli by Höcker et al., reagents that are potentially explosive or can be ignited when dry or exposed to friction are too hazardous to be used in an extrusion process, therefore chemistry involving azides or hydrazines for example, would need to be

Versatile synthesis of end-reactive polyrotaxanes applicable to fabrication of supramolecular biomaterials

• Atsushi Tamura,
• Asato Tonegawa,
• Yoshinori Arisaka and
• Nobuhiko Yui

Beilstein J. Org. Chem. 2016, 12, 2883–2892, doi:10.3762/bjoc.12.287

• ][17][18][19][20][21], few have reported on the synthesis of PRXs bearing terminal azides or alkynes [22][23]. This is probably because of the difficulties in synthesizing sufficient amounts of bulky stopper molecules containing azide or alkynyl groups for the capping reaction. Herein, we describe a

New approaches to organocatalysis based on C–H and C–X bonding for electrophilic substrate activation

• Pavel Nagorny and
• Zhankui Sun

Beilstein J. Org. Chem. 2016, 12, 2834–2848, doi:10.3762/bjoc.12.283

• substantial dipole moment (≈4.5 D) almost aligned with the C5–H bond and the relatively high acidity of this position (pKa(DMSO) = 27–28, for the 1H-tautomer). These heterocycles, which are easily available from 1,3-cycloaddition of alkynes and azides, can both form strong C–H bonds with hydrogen bond

Catalytic Wittig and aza-Wittig reactions

• Zhiqi Lao and
• Patrick H. Toy

Beilstein J. Org. Chem. 2016, 12, 2577–2587, doi:10.3762/bjoc.12.253

• catalytic aza-Wittig reactions (Scheme 16) [33]. It was reported that mixing 2-aminobenzoyl azides 55, carboxylic acids 56, isocyanides 57 with aldehydes 6 in methanol generated intermediates 58, which underwent rearrangement to isocyanates 59 in refluxing toluene. Finally, catalytic aza-Wittig reactions

• with 44 produced cyclized final products 54 via iminophosphoranes 60. Phosphine-catalyzed reactions The initial research in this area was performed by Floris L. van Delft and co-workers who reported the synthesis of 61 and its use in catalytic Staudinger reactions for the reduction of azides 62 to

• addition to phosphine oxide-catalyzed aza-Wittig reactions, Ding’s research group has also explored the use of phosphine catalysis in such reactions. In their initial report regarding this strategy, they used 1 to catalyze intramolecular reactions that converted aryl azides 68 into 4(3H)-quinazolinones 69

Synthesis, dynamic NMR characterization and XRD studies of novel N,N’-substituted piperazines for bioorthogonal labeling

• Constantin Mamat,
• Marc Pretze,
• Matthew Gott and
• Martin Köckerling

Beilstein J. Org. Chem. 2016, 12, 2478–2489, doi:10.3762/bjoc.12.242

• radioactive peaks on a radio-TLC using a radio-TLC scanner (Fuji, BAS2000). [18F]Fluoride was produced using the PET cyclotron Cyclone 18/9 (IBA). [18O]H2O was irradiated with protons (18 MeV, 30 µA) exploiting the 18O(p,n)18F nuclear reaction. CAUTION! Hazard warning for organic azides: risk of explosion by

Combined experimental and theoretical studies of regio- and stereoselectivity in reactions of β-isoxazolyl- and β-imidazolyl enamines with nitrile oxides

• Ilya V. Efimov,
• Marsel Z. Shafikov,
• Nikolai A. Beliaev,
• Natalia N. Volkova,
• Tetyana V. Beryozkina,
• Wim Dehaen,
• Zhijin Fan,
• Viktoria V. Grishko,
• Gert Lubec,
• Pavel A. Slepukhin and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2016, 12, 2390–2401, doi:10.3762/bjoc.12.233

• with inverse electron demand, similarly to the reaction of enamines with azides [37]. To gain deeper insights into the mechanism of the cycloaddition between nitrile oxides and enamines, quantum chemical calculations were carried out using the Gaussian 09 [38] programs package at B3LYP/def2-TZVP [39

Efficient mechanochemical synthesis of regioselective persubstituted cyclodextrins

• Laszlo Jicsinszky,
• Marina Caporaso,
• Katia Martina,
• Emanuela Calcio Gaudino and
• Giancarlo Cravotto

Beilstein J. Org. Chem. 2016, 12, 2364–2371, doi:10.3762/bjoc.12.230

• particularly efficient when good nucleophiles, such as sulfur-containing reactants or inorganic azides, were used. The aim of our study is to highlight the use of HEBM in the preparation of a number of practically important CD derivatives, as seen in Scheme 1. Although in our work neither the reaction

• enough to warm the reaction mixture to an appropriate value. The very low solubility of the CD azides created an additional disadvantage and so we discarded the use of these wetting solvents. Alternatively, a wetting substance, which is an equally poor solvent for the CD derivatives and NaI, 1-pentanol

Enduracididine, a rare amino acid component of peptide antibiotics: Natural products and synthesis

• Darcy J. Atkinson,
• Briar J. Naysmith,
• Daniel P. Furkert and
• Margaret A. Brimble

Beilstein J. Org. Chem. 2016, 12, 2325–2342, doi:10.3762/bjoc.12.226

• 46% yield over twelve steps (Scheme 4). Azide 34 was easily converted to amino azide 36 via a two-step sequence, but conversion of azide 34 to amino azide 37 was more complex and required additional transformations [56]. Conversion of both amino azides 36 and 37 to azido acids 38 and 39 began with

• protecting group manipulation and installation of the guanidine using S-methylisothiourea 33 (Scheme 5). Mitsunobu cyclisation followed by deprotection and oxidation afforded the azido acids 38 and 39 in 40% yield over 8 steps from amino azides 36 and 37. Synthesis of β-hydroxyenduracididine by Nieuwenhze et

Stereoselective synthesis of fused tetrahydroquinazolines through one-pot double [3 + 2] dipolar cycloadditions followed by [5 + 1] annulation

• Xiaofeng Zhang,
• Kenny Pham,
• Shuai Liu,
• Marc Legris,
• Alex Muthengi,
• Jerry P. Jasinski and
• Wei Zhang

Beilstein J. Org. Chem. 2016, 12, 2204–2210, doi:10.3762/bjoc.12.211

• addition to formaldehyde, other aldehydes could also be used for the [5 + 1] annulation according to literature [34][35]. Conclusion A one-pot reaction sequence involving [3 + 2] cycloaddition of azomethine ylides, [3 + 2] cycloaddition of azides with alkenes, and denitrogenation followed by a [5 + 1

Application of Cu(I)-catalyzed azide–alkyne cycloaddition for the design and synthesis of sequence specific probes targeting double-stranded DNA

• Svetlana V. Vasilyeva,
• Vyacheslav V. Filichev and
• Alexandre S. Boutorine

Beilstein J. Org. Chem. 2016, 12, 1348–1360, doi:10.3762/bjoc.12.128

• synthesis of conjugates of pyrrole–imidazole polyamide minor groove binders (MGB) with fluorophores and with triplex-forming oligonucleotides (TFOs). Diverse bifunctional linkers were synthesized and used for the insertion of terminal azides or alkynes into TFOs and MGBs. The formation of stable triple