Towards new NIR dyes for free radical photopolymerization processes

• Haifaa Mokbel,
• Guillaume Noirbent,
• Didier Gigmes,
• Frédéric Dumur and
• Jacques Lalevée

Beilstein J. Org. Chem. 2021, 17, 2067–2076, doi:10.3762/bjoc.17.133

• process is expected with different NIR dyes [9]. Table 1 and Figure S2 (Supporting Information File 1) clearly show the exothermicity observed upon irradiation. The proposed NIR dye/iodonium combinations are able to generate free radicals and cationic species (Scheme 7 and Figure 4), and these two

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• . Cationic ROP of anhydrosugars was the pioneering approach for the preparation of synthetic, unnatural xylans. Polyxylofurans with (1–5) and (3–5) linkages were described [199][200]. In most cases, non-uniform polysaccharides were obtained, as in the case of α(1–5)-xylans, prepared in up to 93% yields and

• , enabling the synthesis of a 32mer [272]. The construction of α(1–6)-mannans (up to 10mer) bearing α(1–2)-Man branches was also accomplished using phosphate, N-phenyltrifluoroacetimidate or n-pentenylorthoester donors [273][274]. An approach using a (cationic) ROP method using tricyclic orthoester Man BBs

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• strategy that has been employed to optimize the delivery profile of ASOs, is the functionalization of ASOs with cationic amine groups, either by direct conjugation onto the sugar, nucleobase or internucleotide linkage. The introduction of these positively charged groups has improved properties like

• nuclease resistance, increased binding to the nucleic acid target and improved cell uptake for oligonucleotides (ONs) and ASOs. The modifications highlighted in this review are some of the most prevalent cationic amine groups which have been attached as single modifications onto ONs/ASOs. The review has

• been separated into three sections, nucleobase, sugar and backbone modifications, highlighting what impact the cationic amine groups have on the ONs/ASOs physiochemical and biological properties. Finally, a concluding section has been added, summarizing the important knowledge from the three chapters

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

• moisture, while HF seriously attacks human skin. The N-F fluorinating agents can be classified into two categories: these are neutral and cationic. This review covers the chronological advancement of these reagents regardless of their classification, as they advanced side by side. Review 1. Historical

• gave higher yields of the protonated products 4-3. 1-5. N-Fluoropyridinium salts and their derivatives In 1986, Umemoto et al. reported N-fluoropyridinium triflate and its derivatives 5-4 as new stable cationic fluorinating agents. These possessed either electron-donating or -withdrawing substituents

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• phosphono-PNAs retained the stability against nucleases. In another study, conjugation with glutamine phosphonate or lysine bis-phosphonate amino acid derivatives introduced up to twelve negative charges (phosphonate moieties) into PNAs [91]. The negative charges allowed cationic lipid-mediated delivery of

• cationic RNA binding compounds, perhaps, because the protonation event is coupled with the Hoogsteen hydrogen bond formation. As a result, the partially protonated M strengthens the triple helix without compromising the sequence specificity of recognition [28][30][31]. As discussed above, guanidine groups

• triplex, most likely due to reduced ability of R to π-stack [103]. As expected, fluorescence microscopy showed improved cellular uptake of the cationic guanidinium-modified PNAs [103]. PNA nucleobases for Hoogsteen recognition of adenine: Because the T•A–T triplets are reasonably stable under

Methodologies for the synthesis of quaternary carbon centers via hydroalkylation of unactivated olefins: twenty years of advances

• Thiago S. Silva and
• Fernando Coelho

Beilstein J. Org. Chem. 2021, 17, 1565–1590, doi:10.3762/bjoc.17.112

• . Cationic gold(I) complexes are also suitable catalysts for olefin functionalization, and their use has become more popular than gold(III) catalysis [39]. In 2007, Che and Zhou reported the olefin intramolecular hydroalkylation of N-alkenyl β-ketoamides 13 using the gold(I)–phosphine complex Au[P(t-Bu)2(o

• the aza-Michael addition and that only the cationic gold(I) complex was associated with the intramolecular hydroalkylation reaction. These observations justified the use of a three-fold excess of AgOCl in relation to the gold complex since the silver salt participated both as a source of a non

Breaking paracyclophane: the unexpected formation of non-symmetric disubstituted nitro[2.2]metaparacyclophanes

• Suraj Patel,
• Tyson N. Dais,
• Paul G. Plieger and
• Gareth J. Rowlands

Beilstein J. Org. Chem. 2021, 17, 1518–1526, doi:10.3762/bjoc.17.109

• , protonation might not be the key step, and the highly oxidizing nature of nitration conditions that can lead to the formation of a cationic intermediate via a radical cation might control this reaction [68]. A possible mechanism for the formation of 5 and 6 starts with protonation of 1 give the Wheland

Photoinduced post-modification of graphitic carbon nitride-embedded hydrogels: synthesis of 'hydrophobic hydrogels' and pore substructuring

• Cansu Esen and
• Baris Kumru

Beilstein J. Org. Chem. 2021, 17, 1323–1334, doi:10.3762/bjoc.17.92

• in 20 mL distilled water refreshed repeatedly every 2 hours for 3 times and then left in a fume hood for drying overnight. This procedure was repeated for each substructuring monomer categorized as acidic AA (10 mol % MBA), cationic AAM (10 mol % MBA), and neutral PEGMEMA (10 mol % PEGDMA). Rhodamine

Recent advances in palladium-catalysed asymmetric 1,4–additions of arylboronic acids to conjugated enones and chromones

• Jan Bartáček,
• Jan Svoboda,
• Martin Kocúrik,
• Jaroslav Pochobradský,
• Alexander Čegan,
• Miloš Sedlák and
• Jiří Váňa

Beilstein J. Org. Chem. 2021, 17, 1048–1085, doi:10.3762/bjoc.17.84

• progresses under neutral conditions. The authors postulated that the vacancy on the square-planar Pd(II) species allows a faster alkene insertion in comparison to Pd(0). The cationic Pd(II) enolate exists as a dynamic mixture of C- and O-bound enolate and is highly susceptible to hydrolysis. This means that

• increased the catalytic activity and allowed to run the reaction at a lower temperature [48]. This can be very useful for substrates that can react with traces of Pd(0) that are formed by minor side reactions. The authors suspected that hexafluorophosphate anions stabilize the cationic Pd species and result

Synthesis of 10-O-aryl-substituted berberine derivatives by Chan–Evans–Lam coupling and investigation of their DNA-binding properties

• Peter Jonas Wickhorst,
• Mathilda Blachnik,
• Denisa Lagumdzija and
• Heiko Ihmels

Beilstein J. Org. Chem. 2021, 17, 991–1000, doi:10.3762/bjoc.17.81

• -aryl substituent to the berberine chromophore. The latter has been shown to operate also in resembling cationic, biaryl-type dyes [42][43]. Along the same lines, the low intrinsic emission quantum yield of the parent berberine (1a) has been suggested to result from an internal charge transfer (ICT

Enhanced target cell specificity and uptake of lipid nanoparticles using RNA aptamers and peptides

• Roslyn M. Ray,
• Anders Højgaard Hansen,
• Maria Taskova,
• Bernhard Jandl,
• Jonas Hansen,
• Citra Soemardy,
• Kevin V. Morris and
• Kira Astakhova

Beilstein J. Org. Chem. 2021, 17, 891–907, doi:10.3762/bjoc.17.75

• challenging. In an effort to target LNPs composed of an ionizable cationic lipid (DLin-MC3-DMA), cholesterol, the phospholipid 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), and 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (DMG-PEG 2000) to particular cell types, as well as to generate

• this study, we employed lipid compositions and formulation procedures previously reported in literature [4]. Specifically, the cationic and ionizable DLin-MC3-DMA lipid is a constituent of the FDA-approved LNP-formulated siRNA drug Patisiran® for treatment of familial transthyretin amyloidosis [36][37

• ]. Clinical trial safety assessments of this formulation showed no liver toxicity and no immune stimulation, with ≈10% of trial participants experiencing mild to moderate adverse events upon administration [38]. It includes encapsulation of siRNA by a mixture of lipid components, such as an ionizable cationic

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

• Mio Matsumura,
• Takahiro Teramoto,
• Masato Kawakubo,
• Masatoshi Kawahata,
• Yuki Murata,
• Kentaro Yamaguchi,
• Masanobu Uchiyama and
• Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

• 2, owing to the increased electron deficiency of the phosphorus center in the former. In particular, the energy levels in cationic phospholium 5 are significantly stabilized because of the cationic nature of the phosphorus center. These results are consistent with the 31P NMR observations discussed

Valorisation of plastic waste via metal-catalysed depolymerisation

• Francesca Liguori,
• Carmen Moreno-Marrodán and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2021, 17, 589–621, doi:10.3762/bjoc.17.53

Synthesis of trifluoromethyl ketones by nucleophilic trifluoromethylation of esters under a fluoroform/KHMDS/triglyme system

• Yamato Fujihira,
• Yumeng Liang,
• Makoto Ono,
• Kazuki Hirano,
• Takumi Kagawa and
• Norio Shibata

Beilstein J. Org. Chem. 2021, 17, 431–438, doi:10.3762/bjoc.17.39

• success of our DMF-free systems lies in the generation of sterically demanding cationic species, [P4-t-Bu]H+ or glyme capsulized K+, resulting in the stabilization of CF3− from HCF3 by ion separation. The sterically demanding [P4-t-Bu]H+ or encapsulation of K+ by glymes effectively inhibits the contact of

Helicene synthesis by Brønsted acid-catalyzed cycloaromatization in HFIP [(CF₃)₂CHOH]

• Takeshi Fujita,
• Noriaki Shoji,
• Nao Yoshikawa and
• Junji Ichikawa

Beilstein J. Org. Chem. 2021, 17, 396–403, doi:10.3762/bjoc.17.35

• fluorine, which helps to generate cations but does not affect cationic reactions [23][24][25][26][27]. Thus, HFIP greatly facilitates reactions via cationic intermediates [28]. In the presence of a catalytic amount of trifluoromethanesulfonic acid in HFIP, (biaryl-2-yl)acetoaldehydes or their acetal

Mesoionic tetrazolium-5-aminides: Synthesis, molecular and crystal structures, UV–vis spectra, and DFT calculations

• Vladislav A. Budevich,
• Sergei V. Voitekhovich,
• Alexander V. Zuraev,
• Vadim E. Matulis,
• Vitaly E. Matulis,
• Alexander S. Lyakhov,
• Ludmila S. Ivashkevich and
• Oleg A. Ivashkevich

Beilstein J. Org. Chem. 2021, 17, 385–395, doi:10.3762/bjoc.17.34

• -generator and blowing agent [1][2]. Moreover, it is a useful building block in organic synthesis, including various multicomponent reactions opening the way to diverse fused heterocycles [3]. Salts with anionic tetrazole, i.e., aminotetrazolates 2, and cationic ones, i.e., aminotetrazolium salts 3, are

• following reasons: in case of chloroform, the solvent can form hydrogen bonds with the nitrogen atoms of the 8a molecule, whereas for methanol and water solutions, the solvent can act as a proton donor, and as a result, compound 8a may exist in the 1,3-di-tert-butyl-5-aminotetrazolium cationic form. To

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• the 6-31G* level allowed, by calculating fragment orbitals (FO), the identification of the nature of this attractive interaction [25]. The latter arose from a homoconjugation interaction (−5.3 kcal⋅mol−1) of one fluorine lone pair (πnF FO) with the empty 2pC orbital of the cationic carbon center

• spectroscopic evidence for the complete ionization of several α-(trifluoromethyl) alcohol precursors 9a–c in a superacidic FSO3H–SbF5–SO2 medium. They also brought experimental 19F NMR variation values up to Δδ = +24.8 ppm (Scheme 3). This suggests a partial stabilization of the cationic center by

• partial stabilization of the cationic center by the phenyl groups. Similarly, Laali et al. observed significant 19F NMR downfield chemical shifts upon the formation of α-(trifluoromethyl)pyrenylcarbenium- and α-(trifluoromethyl)anthracenylcarbenium ions 12a–d from the corresponding carbinols 11a–d (Scheme

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

• opening was attributed to the stabilization of the developing cationic center by the +M effect of the fluorine atoms. The formation of the 2,2-difluorohomoallyl cation or 3,3-difluorocyclobutyl cation did not occur as a result of the strong destabilization by the −I effect of the fluorine atoms [96]. On

• the other hand, the principal ring-opened product of 105 derives from the cleavage of the distal bond. In this case, the methyl substituent was superior to the two fluorine atoms in stabilizing an adjacent cationic center in B. Therefore, the ring opening proceeded via the disruption of the C–C bond

Multiswitchable photoacid–hydroxyflavylium–polyelectrolyte nano-assemblies

• Alexander Zika and
• Franziska Gröhn

Beilstein J. Org. Chem. 2021, 17, 166–185, doi:10.3762/bjoc.17.17

• pH-responsive nano-assemblies with switchable size and structure are formed by the association of a photoacid, anthocyanidin, and a linear polyelectrolyte in aqueous solution. Specifically, anionic disulfonated naphthol derivatives, neutral hydroxyflavylium, and cationic poly(allylamine) are used as

• , pH, and temperature. In this respect, it is highly desirable to establish novel supramolecular nanoscale structures in aqueous solution that can respond to multiple triggers. Herein, we studied a multi-responsive system based on the self-assembly of a cationic polyelectrolyte and two organic

• shows the transformation of B to Cc with the fluorescence band changing from λ = 300 nm to λ = 400 nm. Formation and switching cycles of the ternary assemblies In the first step, the supramolecular assemblies were formed by mixing the photoacid 1N36S with Flavy and adding the cationic polyelectrolyte

Insight into functionalized-macrocycles-guided supramolecular photocatalysis

• Minzan Zuo,
• Krishnasamy Velmurugan,
• Kaiya Wang,
• Xueqi Tian and
• Xiao-Yu Hu

Beilstein J. Org. Chem. 2021, 17, 139–155, doi:10.3762/bjoc.17.15

• selectively obtained over the conventional 9,10:9',10'-cyclodimers by the supramolecular photocyclodimerization of 2-anthracenecarboxylate (AC) with the aid of β-CD-functionalized cationic derivatives as chiral catalysts (Figure 7) [25]. Due to the electrostatic interactions between cationic CD and anionic AC

• due to the reduced electrostatic repulsion between the carboxylate groups of AC and the cationic ammonium groups of WP6. Although the selectivity is enhanced, the reaction rate constant of AC with WP6 is 4 times slower compared to that without any host molecule, which may be due to the mismatching

• ], Copyright 2000 American Chemical Society. Structures of the modified CDs as chiral sensitizing hosts. Adapted with permission from [24], Copyright 2000 American Chemical Society. Supramolecular 1:1 and 2:2 complexations of AC with the cationic β-CD derivatives 16–21 and subsequent photocyclodimerization to

Supramolecular polymerization of sulfated dendritic peptide amphiphiles into multivalent L-selectin binders

• David Straßburger,
• Svenja Herziger,
• Katharina Huth,
• Moritz Urschbach,
• Rainer Haag and
• Pol Besenius

Beilstein J. Org. Chem. 2021, 17, 97–104, doi:10.3762/bjoc.17.10

• of multivalent interactions is the extracellular adhesion protein L-selectin. L-Selectin plays a critical role in inflammation processes by supporting the migration of leukocytes to inflammatory sites via adhesion to endothelial cells [19][20][21]. On a molecular level, a cationic binding site [22

• ] promotes the binding of ligands exhibiting a high local negative charge density, such as sulfotyrosinated P-selectin glycoprotein ligand-1 (PSGL-1) [23] or heparin [24]. A versatile synthetic ligand that takes advantage of binding to cationic target sites, is dendritic polyglycerol sulfate [25] (dPGS), due

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• total synthesis of naturally occurring inthomycin C ((–)-3) in excellent yield and enantiopurity by employing a cationic oxazaborolidinium-catalyzed asymmetric Mukaiyama aldol reaction and Stille coupling as the key steps (Scheme 7). Treatment of compound 75 with tetra-n-butylammonium fluoride (TBAF) in

Synthesis, crystal structures and properties of carbazole-based [6]helicenes fused with an azine ring

• Daria I. Tonkoglazova,
• Anna V. Gulevskaya,
• Konstantin A. Chistyakov and
• Olga I. Askalepova

Beilstein J. Org. Chem. 2021, 17, 11–21, doi:10.3762/bjoc.17.2

• electroactive materials [52][53][54]. Carbazole-based [6]helicenes [42] and [7]helicenes [50] showed deep blue electroluminescence and have been investigated in OLED devices. Some carbazole-based [5]- and [6]helicenes have been used as visible light photoinitiators for cationic and radical polymerization [41

Pentannulation of N-heterocycles by a tandem gold-catalyzed [3,3]-rearrangement/Nazarov reaction of propargyl ester derivatives: a computational study on the crucial role of the nitrogen atom

• Giovanna Zanella,
• Martina Petrović,
• Dina Scarpi,
• Ernesto G. Occhiato and
• Enrique Gómez-Bengoa

Beilstein J. Org. Chem. 2020, 16, 3059–3068, doi:10.3762/bjoc.16.255

• of a triple bond, which has ultimately led to the total synthesis of several natural compounds [2][8]. The gold-catalyzed rearrangement of suitably substituted propargylic esters in particular provides a platform for cascade processes that involve a cationic or an allene intermediate generated in the

• at C3) could stabilize the pentadienyl cationic intermediate 6, and thus relenting the 4π-electrocyclization, causing either the degradation of the starting material or the formation of unwanted side products. In fact, preliminary experimental results with 5 pointed in this direction, and we decided

• Gaussian suite of programs, using the 6-31G(d,p) basis set for nonmetallic atoms and SDD for Au. The alkynyl–gold(I) cationic complex I (Figure 2) was considered as the starting point of the mechanism (ΔG = 0 kcal⋅mol−1), and all reported energy values in the following discussion are relative to this

Selected peptide-based fluorescent probes for biological applications

• Debabrata Maity

Beilstein J. Org. Chem. 2020, 16, 2971–2982, doi:10.3762/bjoc.16.247

• excimer (490 nm) to monomer emission (406 nm, Figure 3B). Thus, monitoring the relative fluorescence intensities at two wavelengths (F406/F490) allowed the ratiometric detection of nucleic acids. Schmuck et al. reported a similar cationic peptide beacon 3 coupled with a FRET pair, a naphthalene donor and

• ) [42]. Probe 6 has a central lysine spacer which is connected to two symmetric peptidic arms. Each arm contains a cationic lysine as a positively charged head group and a pyrene moiety at the end of the γ-aminobutyric acid linker. Compound 6 is mostly in folded conformation in solution and emits pyrene

• heparin stabilizes the tetrameric structure, without its tryptase dissociates into inactive monomers. The reported cationic ligand binds at the rim of anionic residues around the entrance of the central pore, blocks the access to the active sites, and inhibits enzyme activity. Schmuck et al. reported a