Complexation of molecular clips containing fragments of diphenylglycoluril and benzocrown ethers with paraquat and its derivatives

• Leonid S. Kikot',
• Catherine Yu. Kulygina,
• Alexander Yu. Lyapunov,
• Svetlana V. Shishkina,
• Roman I. Zubatyuk,
• Tatiana Yu. Bogaschenko and
• Tatiana I. Kirichenko

Beilstein J. Org. Chem. 2017, 13, 2056–2067, doi:10.3762/bjoc.13.203

• , Kharkiv, Ukraine 10.3762/bjoc.13.203 Abstract The complexation of molecular clips containing fragments of diphenylglycoluril and benzocrown ethers with paraquat and its derivatives has been studied both in solution and in the solid state. In this paper we studied the influence of the crown ether ring

• size and the nature of the substituents at the nitrogen atoms of the paraquat derivatives on the composition and stability of these complexes. Keywords: complexation; crown ethers; "host–guest chemistry"; molecular clips; paraquat; Introduction After the first report on the synthesis of crown ethers

• and their complexation properties made by Pedersen in 1967, "host–guest chemistry" attracted great attention [1]. In subsequent years, various types of crown compounds have been obtained, their complexation with metal ions, ammonium, and alkylammonium salts has been extensively studied. After Stoddart

p-tert-Butylthiacalix[4]arenes functionalized by N-(4’-nitrophenyl)acetamide and N,N-diethylacetamide fragments: synthesis and binding of anionic guests

• Alena A. Vavilova and
• Ivan I. Stoikov

Beilstein J. Org. Chem. 2017, 13, 1940–1949, doi:10.3762/bjoc.13.188

• -diethylacetamide groups in cone and partial cone conformations have been synthesized. Their complexation ability towards a number of tetrabutylammonium salts n-Bu4NX (X = F−, Cl−, Br−, I−, CH3CO2−, H2PO4−, NO3−) was studied by UV spectroscopy. The effective receptor for the anions studied as well as selective

• of 3.55 × 103–7.94 × 105 M−1. Besides, the binding selectivity for F−, Cl−, CH3CO2−, and H2PO4− anions against other anions was in the range of 4.1–223.9. Substituting one or two fragments in the macrocycle with N,N-diethylacetamide groups significantly reduces the complexation ability of the

• ,N-diethylacetamide fragment and its further functionalization with the N-(4’-nitrophenyl)acetamide moiety. We also calculated the proposed model of anion binding for the new and previously synthesized thiacalix[4]arenes and compared their complexation properties toward number of singly charged

Mechanochemical synthesis of small organic molecules

• Tapas Kumar Achar,
• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2017, 13, 1907–1931, doi:10.3762/bjoc.13.186

• another 1 equiv of Pd(OAc)2 resulted in a second C–H activation to give dicyclopalladated complex F in 7.5 h (Scheme 46). It is notable that the monocyclopalladated complexation generally takes 3 days in solution and dicyclopalladated complex in solution was never been identified [178]. Recently

β-Cyclodextrin- and adamantyl-substituted poly(acrylate) self-assembling aqueous networks designed for controlled complexation and release of small molecules

• Liang Yan,
• Duc-Truc Pham,
• Philip Clements,
• Stephen F. Lincoln,
• Jie Wang,
• Xuhong Guo and
• Christopher J. Easton

Beilstein J. Org. Chem. 2017, 13, 1879–1892, doi:10.3762/bjoc.13.183

• Research School of Chemistry, Australian National University, Canberra, ACT 0200, Australia 10.3762/bjoc.13.183 Abstract Three aqueous self-assembling poly(acrylate) networks have been designed to gain insight into the factors controlling the complexation and release of small molecules within them. These

• substituted poly(acrylate)s, PAAADen, PAAADhn and PAAADddn, respectively, such that the ratio of β-CDen to adamantyl substituents is ca. 3:1. The variation of the characteristics of the complexation of the dyes methyl red, methyl orange and ethyl orange in these three networks and by β-cyclodextrin, β-CD, and

• PAAβ-CDen alone provides insight into the factors affecting dye complexation. The rates of release of the dyes through a dialysis membrane from the three aqueous networks show a high dependence on host–guest complexation between the β-CDen substituents and the dyes as well as the structure and the

Pd(OAc)₂/Ph₃P-catalyzed dimerization of isoprene and synthesis of monoterpenic heterocycles

• Dominik Kellner,
• Maximilian Weger,
• Andrea Gini and
• Olga García Mancheño

Beilstein J. Org. Chem. 2017, 13, 1807–1815, doi:10.3762/bjoc.13.175

• by a base-catalyzed β-hydrogen elimination. Finally, the isoprene dimer 2-TT is liberated by complexation of the Pd(0) with two other molecules of isoprene, regenerating the complex I that enters in the next catalytic cycle. Functionalization of the tail-to-tail dimer: Synthesis of monoterpenic O

An efficient Pd–NHC catalyst system in situ generated from Na₂PdCl₄ and PEG-functionalized imidazolium salts for Mizoroki–Heck reactions in water

• Nan Sun,
• Meng Chen,
• Liqun Jin,
• Wei Zhao,
• Baoxiang Hu,
• Zhenlu Shen and
• Xinquan Hu

Beilstein J. Org. Chem. 2017, 13, 1735–1744, doi:10.3762/bjoc.13.168

• Mizoroki–Heck cross-coupling reactions [64][65]. These electron-donating groups could provide a flexible environment for the Pd center and thus favoring the complexation and the migratory insertion of an alkene. Cavell reported that a pyridine functionalized Pd–NHC complex showed outstanding catalytic

Block copolymers from ionic liquids for the preparation of thin carbonaceous shells

• Sadaf Hanif,
• Bernd Oschmann,
• Dmitri Spetter,
• Muhammad Nawaz Tahir,
• Wolfgang Tremel and
• Rudolf Zentel

Beilstein J. Org. Chem. 2017, 13, 1693–1701, doi:10.3762/bjoc.13.163

• with unique properties. Alternatively, it is possible to coordinate low molar mass ionic liquids to polymers by complexation of their anions to cyclodextrin side chains. This can have an influence on their lower critical solution temperature (LCST) [10][11]. Beside their use as organic solvent, they

Molecular recognition of N-acetyltryptophan enantiomers by β-cyclodextrin

• Spyros D. Chatziefthimiou,
• Mario Inclán,
• Petros Giastas,
• Athanasios Papakyriakou,
• Konstantina Yannakopoulou and
• Irene M. Mavridis

Beilstein J. Org. Chem. 2017, 13, 1572–1582, doi:10.3762/bjoc.13.157

• complexation (Supporting Information File 1, Figure S1). The inflection point of the graphs at 0.5 indicates a 1:1 stoichiometry for both enantiomers. The tryptophan protons were affected differently upon complexation (Supporting Information File 1, Figure S2), i.e., the graphs due to shifts of the indole’s

• complexation modes, one involving the indole phenyl ring with one host only and the aliphatic chain with two host molecules. The fact that the second mode takes place mainly when there is an excess of host concentration indicates that the inclusion of the indole moiety is the predominant mode of interaction

• studies in aqueous solution show that both enantiomers form similar, but not identical complexes with β-CD. L-NAcTrp induces larger shifts of β-CD cavity protons, suggesting stronger binding. For both enantiomers the prevailing complexation mode involves insertion in the cavity with the N-acetyl group in

Chemical systems, chemical contiguity and the emergence of life

• Terrence P. Kee and
• Pierre-Alain Monnard

Beilstein J. Org. Chem. 2017, 13, 1551–1563, doi:10.3762/bjoc.13.155

• protocellular systems. The metal-sensitivity issue could be partially resolved using mixed amphiphile membranes [20] or trapping of the metal ions via complexation [21]. Uptake and transduction of energy (light, geothermal, or chemical energy) is essential to permit the emergence of truly (semi-)autonomous

Synthesis and metal binding properties of N-alkylcarboxyspiropyrans

• Alexis Perry and
• Christina J. Kousseff

Beilstein J. Org. Chem. 2017, 13, 1542–1550, doi:10.3762/bjoc.13.154

• binding occurs as a result of stabilisation of the zwitterionic merocyanine isomer via phenoxide–metal complexation [17] (Figure 1). Commonly, merocyanines undergo photoreversion to their corresponding spiropyran under visible light irradiation and metal complexation is usually achieved either in darkness

• metals was in the order Zn2+ > Mg2+ > Co2+ > Ni2+. Binding to Ni2+ was considerably less effective than for other divalent metal cations and this was particularly pronounced for non-carboxylate 9, wherein 9–Ni2+ complexation did not exceed background [merocyanine]. Merocyanine complexation of Cu2+ was

• /fluorimetric receptors for metal cations via complexation of the merocyanine isomer. Consequently, we have assessed the metal binding behaviour of spiropyrans bearing N-acetic acid through to N-dodecanoic acid tethers by 1H NMR and UV–vis spectroscopy. All compounds tested displayed a strong preference for

Mechanochemistry-assisted synthesis of hierarchical porous carbons applied as supercapacitors

• Desirée Leistenschneider,
• Nicolas Jäckel,
• Felix Hippauf,
• Volker Presser and
• Lars Borchardt

Beilstein J. Org. Chem. 2017, 13, 1332–1341, doi:10.3762/bjoc.13.130

• −1 indicates complexation [51]. The sample Polymer-SF-3 was investigated by matrix-assisted laser desorption/ionization with a time-of-flight mass spectrometer (MALDI–TOF) revealing a weight-averaged molar mass (Mw) of 2015.6 g mol−1, which is equivalent to 6 monomeric units. Synthesis of the

Strategies toward protecting group-free glycosylation through selective activation of the anomeric center

• A. Michael Downey and
• Michal Hocek

Beilstein J. Org. Chem. 2017, 13, 1239–1279, doi:10.3762/bjoc.13.123

• this section we highlight some very elegant examples of transition metal-catalyzed glycosylation strategies that have been successful even in the presence of other unprotected hydroxy groups in the molecules. 3.4.1 Au(III)–alkynyl complexation: The Finn group [62] developed a protecting-group-free Au

Interactions between shape-persistent macromolecules as probed by AFM

• Johanna Blass,
• Jessica Brunke,
• Franziska Emmerich,
• Cédric Przybylski,
• Vasil M. Garamus,
• Artem Feoktystov,
• Roland Bennewitz,
• Gerhard Wenz and
• Marcel Albrecht

Beilstein J. Org. Chem. 2017, 13, 938–951, doi:10.3762/bjoc.13.95

• length values. Complexation of monotopic and ditopic guests In contrast to monomer 7, polymer 8 was soluble in water up to a concentration of 0.15 mM (based on the repeating unit). This allows the investigation of the complexation of ditopic and monotopic guests, 9 and 10, respectively. The solubility of

• hydrophilic guest to significantly improve the solubility in water. Binding constants of about 40,000 M−1, which were in the same range as literature values for the incorporation of adamantane derivatives into β-CD, [61] were obtained using ITC measurements considering a two-step sequential complexation with

• guest 10. Further information is provided in Supporting Information File 1. Incomplete complexation with cationic guest molecules is indicated by a significant lower binding constant of 670 M−1 for the second binding complexation step, which is strongly inhibited as a result of the electronic repulsion

The effect of cyclodextrin complexation on the solubility and photostability of nerolidol as pure compound and as main constituent of cabreuva essential oil

• Joyce Azzi,
• Pierre-Edouard Danjou,
• David Landy,
• Steven Ruellan,
• Lizette Auezova,
• Hélène Greige-Gerges and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2017, 13, 835–844, doi:10.3762/bjoc.13.84

• (randomly methylated β-CD, RAMEB, or a low 2-O-methylated-β-CD, CRYSMEB) and sulfobutylether-β-CD (SBE-β-CD) (Figure 1). Molecular complexation in CDs has been widely proposed for EOs to limit their degradation during processing and storage and to offer a good dispersion of compounds in the aqueous media

• -Ner isomer leading to a more stable inclusion complex [16]. An exception is observed for γ-CD, where cis-Ner is better encapsulated than trans-Ner, owing to the larger cavity of this CD. Phase-solubility studies also allow the determination of the complexation efficiency (CE) permitting to evaluate

• solubility studies. Indeed, formation constants determined by this method are generally overestimated since several effects are combined and not only complexation [25]. Phase solubility studies of cabreuva essential oil Phase solubility studies were also performed for the cabreuva EO, an EO rich in trans-Ner

Synthesis of ribavirin 2’-Me-C-nucleoside analogues

• Fanny Cosson,
• Aline Faroux,
• Jean-Pierre Baltaze,
• Jonathan Farjon,
• Régis Guillot,
• Jacques Uziel and
• Nadège Lubin-Germain

Beilstein J. Org. Chem. 2017, 13, 755–761, doi:10.3762/bjoc.13.74

• mixture by α- and β-attack; this second one can be explained by a magnesium complexation with the base. More interestingly, the methylation proceeded stereoselectively leading to 13b in 87% yield when trimethylaluminium was used [24]. The stereochemical outcome of this reaction was determined by selective

Inclusion complexes of β-cyclodextrin with tricyclic drugs: an X-ray diffraction, NMR and molecular dynamics study

• Franca Castiglione,
• Fabio Ganazzoli,
• Luciana Malpezzi,
• Andrea Mele,
• Walter Panzeri and
• Giuseppina Raffaini

Beilstein J. Org. Chem. 2017, 13, 714–719, doi:10.3762/bjoc.13.70

• single bond. The lack of disorder in the C9–C10 segment suggests that complexation constrains 2 in a single conformation in the solid state. The MD simulations led to the formation of a 1:1 inclusion complex of β-CD with molecules 1 and 2 both in vacuo and in explicit water. In both cases, the complex

Fluorescent carbon dots from mono- and polysaccharides: synthesis, properties and applications

• Stephen Hill and
• M. Carmen Galan

Beilstein J. Org. Chem. 2017, 13, 675–693, doi:10.3762/bjoc.13.67

• negatively-charged polysaccharide, and shown by AFM, DLS and TEM, to have formed nano-aggregates of up to 250 nm. Interestingly, the emissive properties of the CDs were unchanged upon complexation to HA. The resultant nano-aggregates were then loaded with doxorubicin (DOX) and a strong correlation between

Pd- and Cu-catalyzed approaches in the syntheses of new cholane aminoanthraquinone pincer-like ligands

• Nikolay V. Lukashev,
• Gennadii A. Grabovyi,
• Dmitry A. Erzunov,
• Alexey V. Kazantsev,
• Gennadij V. Latyshev,
• Alexei D. Averin and
• Irina P. Beletskaya.

Beilstein J. Org. Chem. 2017, 13, 564–570, doi:10.3762/bjoc.13.55

• )anthraquinones with a series of cations demonstrated their high binding affinity to Cu2+, Al3+, and Cr3+. Keywords: amination; aminocholanes; bile acids; cation complexation; Cu-catalysis; diaminoanthraquinone; Pd-catalysis; Introduction Bile acids are known to ensure vital processes in vertebrate organisms

• react with aryl halides to provide a wide range of products in excellent yields. However, yet there was no evidence of the same technique being applied to steroidal amines. Our particular interest was drawn by the synthesis of cholane-diaminoanthraquinone derivatives that can possess good complexation

• in the arylation of cholic acid derived amine 3c with 6a affording 34% of 5e. Thus, Pd-catalyzed amination seems to be a very competitive route for the preparation of arylated aminocholanes. Complexation of bile acid derived ligands Steroidal ligands are known to be excellent hosts for different ions

Spectral and DFT studies of anion bound organic receptors: Time dependent studies and logic gate applications

• Srikala Pangannaya,
• Neethu Padinchare Purayil,
• Shweta Dabhi,
• Venu Mankad,
• Prafulla K. Jha,
• Satyam Shinde and
• Darshak R. Trivedi

Beilstein J. Org. Chem. 2017, 13, 222–238, doi:10.3762/bjoc.13.25

• decrease in the intensity of the original absorption bands of receptors R1 and R2 centered at 395 nm and 459 nm, respectively, and the gradual increase of the bands centered at 492 nm and 560 nm with clear isosbestic points indicates the complexation process. It is assumed that the AcO− ions interacted

• the hydroxy group. An isosbestic point is observed at 323 nm representing the interaction of Hg2+ with R1 involving the imine group and the oxygen of the hydroxy group. The corresponding B–H plot displayed a 1:1 complexation ratio between R1 and Hg2+ ion. A picture of the observed color change and the

Interactions between photoacidic 3-hydroxynaphtho[1,2-b]quinolizinium and cucurbit[7]uril: Influence on acidity in the ground and excited state

• Jonas Becher,
• Daria V. Berdnikova,
• Darinka Dzubiel,
• Heiko Ihmels and
• Phil M. Pithan

Beilstein J. Org. Chem. 2017, 13, 203–212, doi:10.3762/bjoc.13.23

• this ligand increase by about two to three orders of magnitude, respectively, when bound to CB[7]. Keywords: azoniahetarenes; cucurbit[7]uril; heterocycles; photoacids; supramolecular photochemistry; Introduction The complexation of ligands by macrocyclic host molecules, such as crown ethers

• ] hosts with high affinity [6]. In most cases, this complexation strongly affects the chemical or physical properties of the ligand. For example, it was demonstrated that the optical properties of organic dyes may be modified drastically upon complexation in the CB cavity [7]. At the same time, this

• photoreactions that are not possible in homogeneous solution [10][11][12][13][14][15]. Considering the importance of acid–base equilibria in chemistry and biology it is also tempting to employ the reversible complexation of acidic or alkaline guest molecules with CB[n] for the controlled modification of their

Efficient access to β-vinylporphyrin derivatives via palladium cross coupling of β-bromoporphyrins with N-tosylhydrazones

• Vinicius R. Campos,
• Ana T. P. C. Gomes,
• Anna C. Cunha,
• Maria da Graça P. M. S. Neves,
• Vitor F. Ferreira and
• José A. S. Cavaleiro

Beilstein J. Org. Chem. 2017, 13, 195–202, doi:10.3762/bjoc.13.22

• ]. The use of the porphyrin zinc complex avoids the complexation of the tetrapyrrolic macrocycle with Pd(II) formed during the catalytic cycle, and in this way prevents the loss of the catalyst. In the first experiments, the reactions between 2-bromo-5,10,15,20-tetraphenylporphyrinatozinc(II) (1) and the

Phosphated cyclodextrins as water-soluble chiral NMR solvating agents for cationic compounds

• Cira Mollings Puentes and
• Thomas J. Wenzel

Beilstein J. Org. Chem. 2017, 13, 43–53, doi:10.3762/bjoc.13.6

• higher degree of complexation. However, in some spectra there have been an overlap of one of the substrate resonances with other resonances of the substrate or CD in such a way that it was not possible to determine in a regular one-dimensional NMR spectrum whether enantiomeric differentiation was present

Stabilization of nanosized titanium dioxide by cyclodextrin polymers and its photocatalytic effect on the degradation of wastewater pollutants

• Tamás Zoltán Agócs,
• István Puskás,
• Erzsébet Varga,
• Mónika Molnár and
• Éva Fenyvesi

Beilstein J. Org. Chem. 2016, 12, 2873–2882, doi:10.3762/bjoc.12.286

• when linked to nanoTiO2 colloids leading to restriction of charge–hole recombination [35]. The efficiency is further improved by keeping the ligands close to the surface of nanoTiO2 via inclusion complexation. In other studies the presence of CDs caused a delay in the photocatalytic degradation of

• -stabilized nanoTiO2 as additive hardly any decrease in the drug concentration upon UV irradiation was measured especially in tap water. It is well-known that the complexation often has a protective effect on the included guest molecules [8]. Either catalysis or inhibition of the light-induced cleavage can

• is deeply included into the cavity [51], while MB is too large to be completely shielded by complexation. The too strong association between IBR and the cavities of CMBCD-P can be a possible reason of protection instead of catalytic decomposition in this process. Further experiments are needed to

Biochemical and structural characterisation of the second oxidative crosslinking step during the biosynthesis of the glycopeptide antibiotic A47934

• Veronika Ulrich,
• Clara Brieke and
• Max J. Cryle

Beilstein J. Org. Chem. 2016, 12, 2849–2864, doi:10.3762/bjoc.12.284

• protein’s N-terminus. Spectral analysis of StaF showed that it exhibits the typical P450 absorption spectra, but with only half of the StaF species being in the catalytically competent state upon reduction and CO-complexation. Despite this, we successfully reconstituted the StaF activity in vitro and could

New approaches to organocatalysis based on C–H and C–X bonding for electrophilic substrate activation

• Pavel Nagorny and
• Zhankui Sun

Beilstein J. Org. Chem. 2016, 12, 2834–2848, doi:10.3762/bjoc.12.283

• chloride complexation, the provided X-ray data are consistent with L13 acting as hydrogen bond donors (Scheme 10B). The published X-ray data for the chloride and bromide salts of L13 with R2 = C6F5 indeed provide evidence of anion–π bonding with the C6F5 group. In addition, we also noted that there is

• bond-donor catalysts by Bibal and co-workers [53][54]. Tetraalkylammonium catalyst (L6)-catalyzed dearomatization of isoquinolinium salts [50]. Tetraalkylammonium catalyst L6 complexation to halogen-containing substrates [51]. Tetraalkylammonium-catalyzed aza-Diels–Alder reaction by Maruoka and co