Identification, synthesis and mass spectrometry of a macrolide from the African reed frog Hyperolius cinnamomeoventris

• Markus Menke,
• Pardha Saradhi Peram,
• Iris Starnberger,
• Walter Hödl,
• Gregory F.M. Jongsma,
• David C. Blackburn,
• Mark-Oliver Rödel,
• Miguel Vences and
• Stefan Schulz

Beilstein J. Org. Chem. 2016, 12, 2731–2738, doi:10.3762/bjoc.12.269

• acid precursor is often oxidized near the end of the chain to form a polar hydroxy acid. The following ring-closure reduces the hydrophilicity of the compound and increases its vapor pressure, making the resulting macrocycle well-suited to serve as a signal [1]. Fatty acid derived macrolactones were

A direct method for the N-tetraalkylation of azamacrocycles

• Andrew J. Counsell,
• Angus T. Jones,
• Matthew H. Todd and
• Peter J. Rutledge

Beilstein J. Org. Chem. 2016, 12, 2457–2461, doi:10.3762/bjoc.12.239

• ]. N-Tetraalkylation is a simple modification which can facilitate significant diversification of the macrocycle, often inducing marked changes to the chelation properties of the ligand [2][29]. From the first reports of N-tetramethylcyclam (1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane) [29

• miscible aqueous-organic solvent system. The procedure combines the macrocycle and alkyl halide (4.1 equivalents), dissolved in a 1:1 mixture of aqueous sodium hydroxide solution (1 M) and CH3CN (Scheme 1). The mixture is then shaken, not stirred. A fine precipitate can be seen at the solvent phase barrier

Efficient mechanochemical synthesis of regioselective persubstituted cyclodextrins

• Laszlo Jicsinszky,
• Marina Caporaso,
• Katia Martina,
• Emanuela Calcio Gaudino and
• Giancarlo Cravotto

Beilstein J. Org. Chem. 2016, 12, 2364–2371, doi:10.3762/bjoc.12.230

• the chloride has less affinity to the macrocycle. It was not possible to reproduce the literature method [14] for per-6-chloro-β-CD synthesis, but a protocol using p-toluenesulfonyl chloride under reaction conditions that were analogous to the iodination/bromination reaction resulted in the targeted

Enduracididine, a rare amino acid component of peptide antibiotics: Natural products and synthesis

• Darcy J. Atkinson,
• Briar J. Naysmith,
• Daniel P. Furkert and
• Margaret A. Brimble

Beilstein J. Org. Chem. 2016, 12, 2325–2342, doi:10.3762/bjoc.12.226

• that final deprotection of the remaining enduracididine protecting groups would take place after formation of the macrocycle. Treatment of linear precursor 116 with modified Shiina macrolactonisation conditions reported by Batey et al. [74] of 2-methyl-6-nitrobenzoic anhydride (MNBA), DMAP and Dy(OTf)3

• afforded macrocycle 117 in 30–35% yield. Unfortunately efforts to remove both the Cbz and CO2H moieties of 117 to afford macrocycle 109 under hydrogenation conditions were unsuccessful. Conclusion The recent interest in teixobactin has resulted from its clinically unexploited mode of action, potent

• -hydroxyenduracididine 98. Total synthesis of mannopeptimycin α (12) and β (13). Synthesis of protected L-allo-enduracididine 102. The solid phase synthesis of teixobactin (17). Retrosynthesis of the macrocyclic core 109 of teixobactin (17). Synthesis of macrocycle 117. Acknowledgements The authors would like to thank

Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides

• Franziska Hemmerling and
• Frank Hahn

Beilstein J. Org. Chem. 2016, 12, 1512–1550, doi:10.3762/bjoc.12.148

• ETH A7796 as well as by Streptomyces fulvissimus and consists of four nonactic acid units, which are assembled in a head-to-tail fashion giving a C2-symmetric (−)-(+)-(−)-(+) macrocycle [53]. Nonactin (70) biosynthesis has been extensively studied and shows multiple unusual features. Genes of an ACP

From steroids to aqueous supramolecular chemistry: an autobiographical career review

• Bruce C. Gibb

Beilstein J. Org. Chem. 2016, 12, 684–701, doi:10.3762/bjoc.12.69

• aromatic macrocycle [25]. Interestingly, as these hosts are tetra-acetals we initially tried removing the template under acidic conditions. However, even reflux in 1:1 EtOH/H2SO4 for a week failed to affect the starting material. Evidently, under reversible conditions, a broken acetal can easily reform

• oriented. We designed two general families of tris-pyridyl hosts to bind zinc ions within our proposed chiral canyons (Figure 4) [26][27][28]. The shown macrocycle turned out not to be a strong binder of zinc, but did demonstrate enantioselective binding of chiral amino acids that was dependent on the

Creating molecular macrocycles for anion recognition

• Amar H. Flood

Beilstein J. Org. Chem. 2016, 12, 611–627, doi:10.3762/bjoc.12.60

• Otago. Being given the chance of independence at Indiana University as an assistant professor was a welcome next step to fulfilling the dream. Career accomplishments and highlights Macrocycle discoveries Macrocycles have been key to the group’s research findings. The timeline of macrocycle structures

• macrocycle (Figure 5c). I recall being amazed at how well the two ends came together and I thought it was a little too convenient. So, with plenty of time left in the lecture, I carefully redrew the molecular design as a sequence of hexagons and pentagons. I used as much precision as possible and made use of

• the lines on the notepad for guidance; a hangover from my father’s influence as a builder. If anything, the design got sharper upon redrawing. A few more things happened that same day to benefit the realization of the macrocycle. I tested the idea using simple molecular mechanics to recapitulate the

Interactions of cyclodextrins and their derivatives with toxic organophosphorus compounds

• Sophie Letort,
• Sébastien Balieu,
• William Erb,
• Géraldine Gouhier and
• François Estour

Beilstein J. Org. Chem. 2016, 12, 204–228, doi:10.3762/bjoc.12.23

• covalent bond between the macrocycle and the reagent, first forming an intermediate and then the product; (b) by providing the reactants a new environment with novel reactivity, i.e., selectivity and/or rate due to the apolar CD cavity. In alkaline medium hydrolysis of organophosphorus species, an

• , the macrocycle has no influence on the degradation of the nerve agent. This might be rationalized by the inclusion of the triazole ring into the CD’s cavity by a tumbling phenomenon as shown by Monflier et al. [81]. This process would therefore prevent any interaction of the hydroxamic acid group with

A journey in bioinspired supramolecular chemistry: from molecular tweezers to small molecules that target myotonic dystrophy

• Steven C. Zimmerman

Beilstein J. Org. Chem. 2016, 12, 125–138, doi:10.3762/bjoc.12.14

• even to form supramolecular inkjet printing inks [40]. It is clear that molecular tweezers have found diverse applications, many of which derive from their cleft-like architecture. For example, the recognition of the polymer by a macrocycle would necessitate the threading of the polymer through the

• macrocycle and the act of reading the polymer sequence would have to be performed sequentially rather than random access. Macrocycles make an appearance: macrocyclic bisintercalators and our early efforts to develop DNA probes As just illustrated, one of the major advantages of the molecular tweezer approach

• observation that all synthetic bisintercalators of DNA were nonmacrocyclic. DNA bisintercalating natural products with macrocyclic peptide scaffolds (such as echinomycin) were known as early as 1957, but these bound with the macrocycle in a single groove [41]. We wondered whether a macrocyclic bisintercalator

Aggregation behavior of amphiphilic cyclodextrins in a nonpolar solvent: evidence of large-scale structures by atomistic molecular dynamics simulations and solution studies

• Giuseppina Raffaini,
• Fabio Ganazzoli and
• Antonino Mazzaglia

Beilstein J. Org. Chem. 2016, 12, 73–80, doi:10.3762/bjoc.12.8

• persist for a long time. From the conformational viewpoint, it is also interesting to notice that the thioethyl chains, linked to the primary rim of the macrocycle at the C6 carbon through the sulfur atoms shown in yellow in Figure 1 and Figure 2, tend to stay at the aggregate envelope, thus allowing the

Determination of formation constants and structural characterization of cyclodextrin inclusion complexes with two phenolic isomers: carvacrol and thymol

• Miriana Kfoury,
• David Landy,
• Steven Ruellan,
• Lizette Auezova,
• Hélène Greige-Gerges and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2016, 12, 29–42, doi:10.3762/bjoc.12.5

• 2. This is due to the small relative mass changes between the free and the complexed macrocycle. Meanwhile, the D values of both encapsulated 1 and 2 decreased (Table 3, Table 4 and Figure 3). This proved that 1 and 2 are included in the CD cavity and diffuse slowly. Finally, variation of chemical

Synthesis and photophysical characteristics of polyfluorene polyrotaxanes

• Aurica Farcas,
• Giulia Tregnago,
• Ana-Maria Resmerita,
• Pierre-Henri Aubert and
• Franco Cacialli

Beilstein J. Org. Chem. 2015, 11, 2677–2688, doi:10.3762/bjoc.11.288

• -βCD rotaxane copolymer are also upfield shifted by 0.05 ppm as compared to those of the non-rotaxane homologue, while all protons of the TM-βCD macrocycle are shifted by more than 0.07 ppm. Comparing the integrals of d' protons from monomer 1 to those corresponding to H1 protons of TM-βCD, the average

• ) suggesting that about every three structural unit was threaded with TM-βCD macrocycle. However, compared with native CD [43][45], 1H NMR results suggest poor hydrophobic–hydrophobic interactions of molecule 1 towards TM-βCD. Unfortunately, as a consequence of the low Ks of 1·TM-γCD, the polyrotaxane 3·TM-γCD

• intensity of the 0–0 transition for 3·TM-βCD is higher than that of the 0–1 transition, contrary to what we observe for the non-rotaxane 3 counterpart. Such trends suggest that the encapsulation with the macrocycle TM-βCD acts to reduce intermolecular interactions, in agreement with previous reported

Inclusion complexes of 2-methoxyestradiol with dimethylated and permethylated β-cyclodextrins: models for cyclodextrin–steroid interaction

• Mino R. Caira,
• Susan A. Bourne,
• Halima Samsodien and
• Vincent J. Smith

Beilstein J. Org. Chem. 2015, 11, 2616–2630, doi:10.3762/bjoc.11.281

• ) in two representative host CD molecules, one of them (DIMEB) having restricted conformational flexibility owing to cooperative intramolecular O–H···O hydrogen bonding that maintains the round shape of the macrocycle, and the other (TRIMEB) lacking this facility and hence having access to

Smart molecules for imaging, sensing and health (SMITH)

• Bradley D. Smith

Beilstein J. Org. Chem. 2015, 11, 2540–2548, doi:10.3762/bjoc.11.274

• a remarkable self-assembly process that we call Synthavidin (synthetic avidin). A simple example is illustrated in Scheme 5 [44]. A water soluble tetralactam macrocycle with anthracene sidewalls is threaded by squaraine dyes that are flanked by long PEG chains to give highly stable complexes with

• nanomolar dissociation constants. The rate of macrocycle threading is insensitive to the length of the appended PEG chains. But the threading kinetics are greatly affected by the steric size of the second N-substituent at each end of the squaraine dye, and an N-propyl group produces a perfect mixture of

• kinetic and thermodynamic properties. The nanomolar affinity in water is exceptionally strong for a synthetic cyclophane host molecule, and it is driven by a large favorable change in enthalpy. The two oxygen atoms on the encapsulated squaraine dye form hydrogen bonds to the four macrocycle NH residues

Recent highlights in biosynthesis research using stable isotopes

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2015, 11, 2493–2508, doi:10.3762/bjoc.11.271

• the phenolic oxygen at C-6 to close the macrocycle in 25. In this mechanism, the aromaticity of the phenol ring remains untouched. Intramolecular Diels–Alder reaction gives rise to the hexacyclic system 26, which would then be oxidized to pyrrocidine A (24) at C-2’. In contrast to route A, the

Diversity-oriented synthesis of analogues of the novel macrocyclic peptide FR-225497 through late stage functionalization

• Jyotiprasad Mukherjee,
• Suman Sil and
• Shital Kumar Chattopadhyay

Beilstein J. Org. Chem. 2015, 11, 2487–2492, doi:10.3762/bjoc.11.270

• -225497. Keywords: cross metathesis; cyclic peptides; diversity oriented synthesis; macrocycle; Introduction Diversity-oriented synthesis (DOS) has been established as an important paradigm in drug discovery [1][2][3][4][5][6][7]. Although the major focus is on the synthesis of small molecular libraries

Aggregation behaviour of amphiphilic cyclodextrins: the nucleation stage by atomistic molecular dynamics simulations

• Giuseppina Raffaini,
• Antonino Mazzaglia and
• Fabio Ganazzoli

Beilstein J. Org. Chem. 2015, 11, 2459–2473, doi:10.3762/bjoc.11.267

• diameters of the two rims. This shape is qualitatively displayed by the internal molecular cavity shown in Figure 1a, and quantitatively revealed by the similarity of the pair distribution function PDF of the glycosidic oxygens on the macrocycle and of the S atoms carrying the H chain as a function of their

• distance from the macrocycle centre of mass (c.o.m.), shown in Figure 2a. In particular, these distances roughly fluctuate around a similar average value, with a similar shoulder at larger separation. We further note for the later discussion that the surface accessible to the solvent (Figure 1a) amounts to

• chains in order to minimize the exposed surface. The PDF is again most useful to characterize the molecular shape induced by the environment. This feature can be seen in the PDF of the glycosidic oxygens of the macrocycle and of the S atoms plotted as before as a function of their distance from the

Beyond catalyst deactivation: cross-metathesis involving olefins containing N-heteroaromatics

• Kevin Lafaye,
• Cyril Bosset,
• Lionel Nicolas,
• Amandine Guérinot and
• Janine Cossy

Beilstein J. Org. Chem. 2015, 11, 2223–2241, doi:10.3762/bjoc.11.241

• -dihydroquinolizinium salts (Scheme 13) [50]. In their synthetic approach towards (R)-(+)-muscopyridine, Fürstner and Leitner have constructed the 13-membered ring macrocycle using a RCM applied to diene 34 [51]. In order to avoid the catalyst deactivation due to the presence of the pyridine moiety, the precursor 34

• synthesis of the tris-pyrrole macrocyclic pigment nonylprodigiosin [52]. A preliminary protonation of the tris-pyrrole followed by a RCM applied to 37 in the presence of the ruthenium catalyst 36 gave the macrocycle 38, which was then transformed into the saturated derivative 39 using the Wilkinson’s

• of 2,6-disubstituted pyridine 60 was treated with GI, the expected macrocycle 61 was obtained (51%) together with the dimeric cyclophane 62 (20%). The authors explained that the sulfone moieties facilitated the RCM by steering the alkenyl chains into a favorable conformation, but it also may be

Easy access to heterobimetallic complexes for medical imaging applications via microwave-enhanced cycloaddition

• Nicolas Desbois,
• Sandrine Pacquelet,
• Adrien Dubois,
• Clément Michelin and
• Claude P. Gros

Beilstein J. Org. Chem. 2015, 11, 2202–2208, doi:10.3762/bjoc.11.239

• of radiolabeled 111In–NOTA [26]. Unlike the corrole macrocycle, indium(III) porphyrins can be prepared [27]. We wish to report herein (Scheme 1) the convenient synthesis of various multimodal ligands. Those complexes, incorporating one porphyrin or one corrole moiety on one side and one DOTA or NOTA

• -like macrocycle on the other side, have been easily linked by microwave azide–alkyne 1,3-dipolar cycloaddition. The preliminary relaxivity study of these heterobimetallic complexes was also investigated for potential MRI applications. Results and Discussion We first wish to report a “library” of azido

• 1656 cm−1, which clearly demonstrates the complexation of Ga3+ ions with the carboxylic acid groups of ligand 3. Another macrocycle commonly used in medical imaging studies is the NOTA ligand, which is usually preferred to DOTA to chelate e.g. Cu2+. Propargyl-NOTA(t-Bu)2 11 (commercially available) was

Supramolecular chemistry: from aromatic foldamers to solution-phase supramolecular organic frameworks

• Zhan-Ting Li

Beilstein J. Org. Chem. 2015, 11, 2057–2071, doi:10.3762/bjoc.11.222

• core [11]. Using this method, I could prepare bimacrocycle 3 in a short time. This macrocycle was used to template the formation of the so-called tetracationic “blue box” [12][13] from 4 and 5 to give rise to the unique pseudo[3]catenanes 6a and 6b (Scheme 2), together with a trace amount of [2

• ]catenane 6c with the tetracationic cyclophane holding one of the peripheral benzene rings [14]. The TTF unit in 6a and 6b adopted a stable cis or trans configuration, although typically the two configurations easily isomerize into each other in solution. Macrocycle 3 is a brown solid due to the existence

• difference by crystallizing a fluorine-bearing pentagon macrocycle [49][50][51]. No stacking was observed for the methoxy-derived pentagon macrocycle. In contrast, their fluorine-engaged pentagon macrocycle stacked strongly. Moreover, the macrocycle stacked in the 2D space to give rise to the mathematically

Preparation of conjugated dienoates with Bestmann ylide: Towards the synthesis of zampanolide and dactylolide using a facile linchpin approach

• Jingjing Wang,
• Samuel Z. Y. Ting and
• Joanne E. Harvey

Beilstein J. Org. Chem. 2015, 11, 1815–1822, doi:10.3762/bjoc.11.197

• . Although fragment syntheses vary, the late-stage fragment assembly of the dactylolide macrocycle has centred mostly around construction of the C1–C5 dienoate by Wittig-type olefination reactions followed by ester hydrolysis and esterification with the C19 hydroxy group, combined with metathesis to form the

• macrocycle, suitably functionalised for transformation to the natural products. This highly efficient method for connecting the C3–C8 and C16–C20 fragments through a C1–C2 linchpin in a single step contrasts with other routes that require multiple-step sequences including Wittig-type reaction, ester

Structure and conformational analysis of spiroketals from 6-O-methyl-9(E)-hydroxyiminoerythronolide A

• Ana Čikoš,
• Irena Ćaleta,
• Dinko Žiher,
• Mark B. Vine,
• Ivaylo J. Elenkov,
• Marko Dukši,
• Dubravka Gembarovski,
• Marina Ilijaš,
• Snježana Dragojević,
• Ivica Malnar and
• Sulejman Alihodžić

Beilstein J. Org. Chem. 2015, 11, 1447–1457, doi:10.3762/bjoc.11.157

• 2 which sparked our interest, not only because the spiroketal is a biologically relevant subunit whose incorporation into macrolide could yield interesting biological activity, but also because this unit provides unique rigidity to the 6-C to 12-C region of the macrocycle allowing for specific

Selected synthetic strategies to cyclophanes

• Sambasivarao Kotha,
• Mukesh E. Shirbhate and
• Gopalkrushna T. Waghule

Beilstein J. Org. Chem. 2015, 11, 1274–1331, doi:10.3762/bjoc.11.142

• area due to the cost and energy demanding purification process and the poor processibility of the fullerenes. To this end, Zhang and co-workers [140] reported the synthesis of the bisporphyrin macrocycle 144 with an adaptable cavity by using alkyne metathesis with high efficiency. Tamm and co-workers

• with the pentafluorobenzyl ester auxiliary, ester 210 was synthesized in a multistep process and then subjected to olefin metathesis to deliver the macrocycle using the Blechert catalyst 17. The treatment of the pentafluorophenyl benzyl ester 210 with catalyst 17 in toluene afforded the rigid

• macrocycle 211 (39%, Scheme 33). Kotha and Shirbhate [169] have reported the longithorone framework by using RCM as a key step. Dibromo compound 212 was reacted with monoalkylated ethyl acetoacetate 213 in the presence of NaH to deliver bis-alkyated product 214, followed by an oxidation the quinone

Hybrid macrocycle formation and spiro annulation on cis-syn-cis-tricyclo[6.3.0.0^2,6]undeca-3,11-dione and its congeners via ring-closing metathesis

• Sambasivarao Kotha,
• Ajay Kumar Chinnam and
• Rashid Ali

Beilstein J. Org. Chem. 2015, 11, 1123–1128, doi:10.3762/bjoc.11.126

• based macrocycle 6 involving Fischer indolization and ring-closing metathesis (RCM). Various spiro-polyquinane derivatives have been assembled via RCM as a key step. Keywords: aza-polyquiananes; Fischer indolization; macrocycles; ring-closing metathesis; spiropolyquinanes; Introduction Design and

• hydrogenation sequence to deliver the saturated bis-spiro-polyquinane 16d in good yield (Table 1). Conclusion In summary, we have developed a protocol for the synthesis of a diindole-based hybrid macrocycle through Fischer indolization of the triquinane 2 followed by bis-N-allylation and RCM. The allylation-RCM

Tuning the size of a redox-active tetrathiafulvalene-based self-assembled ring

• Sébastien Bivaud,
• Sébastien Goeb,
• Vincent Croué,
• Magali Allain,
• Flavia Pop and
• Marc Sallé

Beilstein J. Org. Chem. 2015, 11, 966–971, doi:10.3762/bjoc.11.108

• adjusted to tune the macrocycle size and shape. Complexation of ligand L1 with precursor Pd(en)(OTf)2 (en = 1,2-ethylenediamine) was carried out in DMSO at 40 °C and monitored by 1H NMR. In 30 min, the reaction converged into a unique symmetrical discrete species that could be isolated in more than 90