Search results

Search for "protonation" in Full Text gives 476 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Electrochemical reduction of unsaturated carbon–carbon bonds via 3d transition-metal catalysis

  • Geon Kang,
  • Minki Jeon,
  • Pooja Kumari Jat,
  • Cheoljae Kim and
  • Isaac Choi

Beilstein J. Org. Chem. 2026, 22, 955–981, doi:10.3762/bjoc.22.75

Graphical Abstract
  • reduction of unsaturated C–C bonds can be broadly classified according to whether the reaction proceeds through a discrete metal hydride (M–H) intermediate (Figure 2A) [49][50][51][52][53] or through a hydride-free pathway (Figure 2B). In the first category, electrochemical reduction/protonation sequences
  • hydride equivalent to the substrate, followed by protonation to furnish the reduced product [64]. In sharp contrast, the second major category comprises hydride-free pathways, in which hydrogenation is achieved without the involvement of a discrete M–H intermediate. These mechanisms arise either from
  • direct concerted proton–electron transfer (CPET) to the substrate or from substrate binding to electrochemically generated low-valent metal centers prior to protonation, in some cases, leading to metallacyclic intermediates. Subsequent reduction then proceeds through stepwise ET/PT sequences or PCET
PDF
Album
Review
Published 17 Jun 2026

Recent advances in copper-catalyzed direct hydroamination of alkenes with (hetero)aromatic amines

  • Hyejeong Lee and
  • Yunmi Lee

Beilstein J. Org. Chem. 2026, 22, 925–947, doi:10.3762/bjoc.22.73

Graphical Abstract
  • coordinated to the copper–amido complex and underwent aminocupration or nucleophilic addition across the C=C bond, generating an organocopper intermediate IV or V. Subsequent protonation by aniline released the β-amino sulfone product and regenerated the copper–amido species, completing the catalytic cycle
  • insertion pathway. Accordingly, the proposed catalytic cycle involved protonation of the alkene to generate carbocationic intermediate III, followed by nucleophilic attack of the (hetero)aromatic amine or copper–amido intermediate II to furnish the hydroamination product. In this system, the copper complex
PDF
Album
Review
Published 11 Jun 2026

A practical CO2-mediated synthesis of 5,6-carboxylated silicon-rhodamines for targeted probe development

  • Dongjie Hou,
  • Shaowei Wu,
  • Ning Xu,
  • Pengjun Bao,
  • Wenhao Jia,
  • Qinglong Qiao and
  • Zhaochao Xu

Beilstein J. Org. Chem. 2026, 22, 915–924, doi:10.3762/bjoc.22.72

Graphical Abstract
  • carboxylation strategy using CO2 as an inexpensive, readily available, and non-toxic C1 source. In principle, CO2 can serve as a carbonyl source through nucleophilic addition followed by protonation to furnish the corresponding carboxylic acid. On the basis of this design (Figure 2a), brominated SiR precursors
  • HRMS (Figure S24) analysis identified this side product as the uncarboxylated rhodamine formed by lithium–halogen exchange followed by protonation. This byproduct likely arises from protonation of the aryllithium intermediate before efficient trapping by CO2, possibly due to trace moisture or other
PDF
Album
Supp Info
Full Research Paper
Published 10 Jun 2026

Palladium-catalyzed benzocyclization reactions of quinoline-2-carboxamides via sequential C–H/N–H functionalization

  • Shoichi Sugita,
  • Kentaro Okano and
  • Atsunori Mori

Beilstein J. Org. Chem. 2026, 22, 905–914, doi:10.3762/bjoc.22.71

Graphical Abstract
  • -bromo-2-iodobenzenes or protonation of activated haloarenes and deactivation of the palladium catalyst. It is therefore indicated that bromo(iodo)benzenes with high electron density utilized in this reaction require significantly longer reaction times to achieve good to excellent yields of products 3
PDF
Album
Supp Info
Full Research Paper
Published 09 Jun 2026

Chiral cyclopropenimine-catalyzed enantioselective Michael reactions of phenol and benzofuran-derived α,β-unsaturated pyrazolamides with benzophenone-imine of glycine esters

  • Ya Bai,
  • Xue-Ying Wang,
  • Si-Kai Zhu,
  • Yan-Ting Shen,
  • Sheng-Yong Zhang and
  • Ping-An Wang

Beilstein J. Org. Chem. 2026, 22, 888–896, doi:10.3762/bjoc.22.69

Graphical Abstract
  • enhance the formation of transition state B. The highly diastereomic ratio of 6a in syn-form may be generated from transition state B. The formation of intermediate C is the rate-limiting step. When intermediate C is formed, the protonation happened rapidly to afford 6a in high enantioselectivity. The
PDF
Album
Supp Info
Full Research Paper
Published 08 Jun 2026

Knoevenagel condensation of 4,5- and 1,8-diazafluorenes

  • Darya S. Cheshkina,
  • Christina S. Becker,
  • Alina A. Sonina and
  • Maxim S. Kazantsev

Beilstein J. Org. Chem. 2026, 22, 803–812, doi:10.3762/bjoc.22.62

Graphical Abstract
  • with ketones resulted in unique di(pyridin-2-yl)methylene)-9H-diazafluorenes being electron-deficient ligands and functional materials. Keywords: acidic conditions; diazafluorene; diazafluorenylidene; Knoevenagel condensation; protonation; Introduction Diazafluorenylidene derivatives were reported to
  • react at all – only starting compounds were quantitatively evaluated from all reactions (Scheme 2, Table 1). To rationalize this observation, we hypothesized that the protonation of nitrogens leads to electrostatic repulsion between the protonated diazafluorene and the iminium cation (vide infra
  • mesomeric effect. On the other hand, diazafluorenes are potentially capable of reversible protonation by acetic acid, which is a competing process decreasing the equilibrium concentration of the enamine form (Scheme 2). Furthermore, an electrostatic repulsion between the protonated diazafluorene (1A/1A’ or
PDF
Album
Supp Info
Full Research Paper
Published 27 May 2026

Halogenated azobenzene acrylates: from efficient solution photoswitching to stable solid-state photochromic materials

  • Martina Vachtlová,
  • Michaela Fecková,
  • Vítězslav Zima,
  • Jan Podlesný,
  • Milan Klikar,
  • Oldřich Pytela,
  • Patrik Pařík,
  • Jakub Opršal,
  • Eliška Juhaňáková,
  • Veronika Chrtová and
  • Filip Bureš

Beilstein J. Org. Chem. 2026, 22, 782–794, doi:10.3762/bjoc.22.60

Graphical Abstract
  • fluorescence intensity linearly dependent on the temperature [19][20]. Priimagi et al. reported thermal sensors based on the simple azobenzenes B1–3 by exploiting the dependence of the protonation rate on the temperature, which is accompanied by a color change [21]. Four different azobenzenes C1–4 were used as
PDF
Album
Supp Info
Full Research Paper
Published 21 May 2026

Synthesis of heterocycles based on azomethine ylides from α-amino acids (or amines) and carbonyl compounds

  • Ekaterina V. Berezhnaya,
  • Alexander I. Ponyaev,
  • Vitali M. Boitsov and
  • Alexander V. Stepakov

Beilstein J. Org. Chem. 2026, 22, 705–741, doi:10.3762/bjoc.22.55

Graphical Abstract
  • by the formation of N,N-complex I. Water then promotes the desilylation step, leading to metallodipole II, which undergoes cycloaddition with a dipolarophile to form metalated adduct III. Final protonation leads to free pyrrolidine (Scheme 34). In [3], Mendoza and colleagues developed a universal
PDF
Album
Review
Published 13 May 2026

Harnessing light energy with molecules

  • Grace G. D. Han,
  • Mogens Brøndsted Nielsen and
  • Hermann A. Wegner

Beilstein J. Org. Chem. 2026, 22, 680–682, doi:10.3762/bjoc.22.52

Graphical Abstract
  • junction at ambient conditions and hence be used as an 8-bit operation unit. Molecular photoswitches are also interesting for temperature sensing applications. Thus, in their publication, Priimagi and co-workers [14] show a strong temperature-dependence of azobenzene protonation in 1,2-dichloroethane
PDF
Editorial
Published 04 May 2026

Experimental and DFT studies on the regioselective methanolysis of 5-azido-9-oxabicyclo[6.1.0]nonan-4-yl 4-nitrobenzoate isomers

  • İlknur Polat,
  • Selçuk Eşsiz and
  • Emine Salamci

Beilstein J. Org. Chem. 2026, 22, 547–556, doi:10.3762/bjoc.22.40

Graphical Abstract
  • each elementary reaction step along these routes were computed. The acid-mediated ring-opening reaction in the isomeric epoxides 9, initiated by protonation, can follow two possible pathways – either along the intermediate 12 or along the intermediate 15. There is a possibility of two products being
PDF
Album
Supp Info
Full Research Paper
Published 26 Mar 2026

Ring contraction and ring expansion reactions in terpenoid biosynthesis and their application to total synthesis

  • Nicolas Kratena,
  • Nicolas Heinzig and
  • Peter Gärtner

Beilstein J. Org. Chem. 2026, 22, 289–343, doi:10.3762/bjoc.22.21

Graphical Abstract
  • the activation of the diphosphate group and ionisation) [25][37] and Class II (ionisation by olefin or epoxide protonation via a carboxylic acid in the active site) [26][38][39] and their reactions thus are mediated by carbocations and olefins, through careful preorganisation of the linear substrate
  • →5 ring contraction can be found in the family of spirocyclic C15-sesquiterpenes, such as β-vetivone B (11, see Scheme 2B) [57][58][59][60]. The linear precursor farnesyl pyrophosphate (9) is first cyclised by germacrene A synthase (GAS) to its name-bearing product 10. From here, protonation by
  • is initiated via protonation of geranylgeranyl pyrophosphate (GGPP, 12) at the terminal olefin with CpPS (= Clitopilus passeckeranis pleuromutilin synthase), forming the decalin system 12a. A cascade of 1,2-shifts delivers the carbocation 12b which undergoes ring contraction and elimination to give
PDF
Album
Review
Published 17 Feb 2026

Arene activation via π-bond localization: concepts and opportunities

  • Paul Meiners,
  • Julian J. Melder and
  • Tobias Morack

Beilstein J. Org. Chem. 2026, 22, 257–273, doi:10.3762/bjoc.22.19

Graphical Abstract
  • during subsequent electrophilic addition. Although the trifluorotoluene complex exists as a mixture of its two coordination diastereomers, the pronounced electronic asymmetry of the molybdenum fragment channels protonation to a single η2-arenium intermediate. This enables nucleophilic addition of a
  • sulfone complex of W(0) (Scheme 3A) [60]. As established previously [61], protonation of η2-arene ligands bearing electron-withdrawing substituents generates reactive arenium intermediates that react with nucleophiles to furnish disubstituted η2-cyclohexadiene complexes. A second protonation/nucleophilic
  • protonated by mild acids to form thermally robust arenium complexes (Figure 11B). This remarkable basicity underscores the exceptional electron-donating power of the {Cr(CO)3}2− and {Mn(CO)3}− units, which stabilize dearomatized, cationic intermediates without auxiliary tethers. Beyond protonation and
PDF
Album
Review
Published 09 Feb 2026

Base-promoted deacylation of 2-acetyl-2,5-dihydrothiophenes and their oxygen-mediated hydroxylation

  • Vladimir G. Ilkin,
  • Margarita Likhacheva,
  • Igor V. Trushkov,
  • Tetyana V. Beryozkina,
  • Vera S. Berseneva,
  • Vladimir T. Abaev,
  • Wim Dehaen and
  • Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2026, 22, 192–204, doi:10.3762/bjoc.22.13

Graphical Abstract
  • led to the intermediate A. Elimination of ethyl/methyl acetate from intermediate A afforded anion B. The latter reacted in ethanolic solution with molecular oxygen [52] with the formation of peroxide anion C. The protonation of anion C with proton sources (residual water or/and solvent or 3a can serve
PDF
Album
Supp Info
Full Research Paper
Published 28 Jan 2026

Total synthesis of natural products based on hydrogenation of aromatic rings

  • Haoxiang Wu and
  • Xiangbing Qi

Beilstein J. Org. Chem. 2026, 22, 88–122, doi:10.3762/bjoc.22.4

Graphical Abstract
  • sequential electron transfer and protonation, enabling regioselective partial dearomatization that is difficult to achieve under hydrogenation conditions. Likewise, hydride reagents – including NaBH3CN, DIBAL-H, and other aluminum or borohydride derivatives – have been widely employed for the selective
  • protonation during reduction or an isomerization event. Kinetic translocation of the double bond to the correct position enabled an intramolecular Heck reaction, a transformation originally developed by Fukuyama (Scheme 12) [78]. Hydrogenation of (−)-tabersonine to (−)-decahydrotabersonine by Catherine
PDF
Album
Review
Published 07 Jan 2026

Synthesis and applications of alkenyl chlorides (vinyl chlorides): a review

  • Daniel S. Müller

Beilstein J. Org. Chem. 2026, 22, 1–63, doi:10.3762/bjoc.22.1

Graphical Abstract
  • , Scheme 24) towards further protonation – often proceeding via more stabilized tertiary carbocation intermediates (for example: 153 is more stable compared to initially formed alkenyl cation 152, Scheme 24) [91]. This protonation pathway commonly leads to the formation of gem-dichloride species 151, which
PDF
Album
Review
Published 02 Jan 2026

Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

  • Luan A. Martinho,
  • Victor H. J. G. Praciano,
  • Guilherme D. R. Matos,
  • Claudia C. Gatto and
  • Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

Graphical Abstract
  • aldehyde 1, activated by protonation of the oxygen atom through structure ii, forming the intermediate aldol iii. In the presence of EDDA, water elimination occurs in intermediate iv, yielding the Knoevenagel adducts 3 or 4. Synthesis of novel imidazo[1,2-a]pyridine–thiazolidinone hybrids To further
  • band around 350 nm was observed. This increase can be explained by deprotonation of the structures, which facilitates solvation effects by water molecules. The cause for the tautomerism effect at acidic pH may be due to the protonation of the basic site of the amino group present in the derivatives
  • -TZVPP single point calculations in CPCM water of compounds 3n and 4n in protonated, deprotonated, and neutral forms showed that there is a degree of charge transfer between a HOMO–LUMO excitation in their neutral and deprotonated forms [98]. Protonation of the nitrogen atom in the donor region shifts
PDF
Album
Supp Info
Full Research Paper
Published 28 Nov 2025

Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications

  • Jullyane Emi Matsushima,
  • Khushbu,
  • Zuliah Abdulsalam,
  • Udyogi Navodya Kulathilaka Conthagamage and
  • Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2345–2366, doi:10.3762/bjoc.21.179

Graphical Abstract
  • macrocycle occurs along a thread containing fumaramide and succinic amide ester units as recognition sites, with highly fluorescent perylene bisimide and pyrene serving as stoppers [67]. The macrocycle features two pyridine units that, upon protonation, effectively quench the fluorescence of both
PDF
Album
Review
Published 31 Oct 2025

Comparative analysis of complanadine A total syntheses

  • Reem Al-Ahmad and
  • Mingji Dai

Beilstein J. Org. Chem. 2025, 21, 2334–2344, doi:10.3762/bjoc.21.178

Graphical Abstract
  • in four steps. Subsequent conjugate addition of the lithium anion of TMS-acetonitrile to 15, followed by careful one-pot protonation of the resulting enolate with ethyl salicylate and TMS removal with CsF, gave 16 bearing three properly arranged substituents. Grignard 1,2-addition to ketone 16
PDF
Album
Review
Published 30 Oct 2025

Pathway economy in cyclization of 1,n-enynes

  • Hezhen Han,
  • Wenjie Mao,
  • Bin Lin,
  • Maosheng Cheng,
  • Lu Yang and
  • Yongxiang Liu

Beilstein J. Org. Chem. 2025, 21, 2260–2282, doi:10.3762/bjoc.21.173

Graphical Abstract
  •  2, path b). In the following years, Liu and co-workers discovered that the protonation of intermediate 2 triggered its conversion to intermediate 3, which subsequently underwent oxidation with oxygen, resulting in the generation of an indenone skeleton 6 [9]. This tunability achieved efficient and
  • pathway-controlled approach using tryptamine ynamides bearing Michael acceptor moieties as substrates (Scheme 27) [38][39]. Under strong Brønsted acid catalysis, protonation of the carbonyl group was achieved, which facilitated a Michael addition between the electron-rich indole C3-position and the
PDF
Album
Review
Published 27 Oct 2025

Electrochemical cyclization of alkynes to construct five-membered nitrogen-heterocyclic rings

  • Lifen Peng,
  • Ting Wang,
  • Zhiwen Yuan,
  • Bin Li,
  • Zilong Tang,
  • Xirong Liu,
  • Hui Li,
  • Guofang Jiang,
  • Chunling Zeng,
  • Henry N. C. Wong and
  • Xiao-Shui Peng

Beilstein J. Org. Chem. 2025, 21, 2173–2201, doi:10.3762/bjoc.21.166

Graphical Abstract
  • generation of 12a in Cu rod electrodes, the Cu anode was expected to liberate Cu+ into the reaction mixture. The reaction of this Cu+ with DMSO and I− afforded (DMSO)nCuI, which was coordinated with C≡C to give B. The intermediate C was obtained by cyclization of B and deprotonation. Further protonation of C
  • -exo-dig N-radical addition into the C≡C bond to generate the cyclic species C. The radical anion D was then obtained via single electron reduction of C at the cathode. The subsequent protonation of D gave α-aminyl radical E [215][216][217], which was converted into the anion F by further cathodic
  • reduction. The subsequent protonation of F occurred to complete the formation of 28. This approach, applying electrolyte as the proton sources, avoided the use of reductants and metal catalysts efficiently. In 2022, Guo developed an electrochemical intramolecular 1,2-amino oxygenation of alkyne to access
PDF
Album
Review
Published 16 Oct 2025

Enantioselective desymmetrization strategy of prochiral 1,3-diols in natural product synthesis

  • Lihua Wei,
  • Rui Yang,
  • Zhifeng Shi and
  • Zhiqiang Ma

Beilstein J. Org. Chem. 2025, 21, 1932–1963, doi:10.3762/bjoc.21.151

Graphical Abstract
  • with the desired C6 chiral center was constructed via intermediate 229, where the sulfinyl group induced K+–oxygen chelation to form a six-membered transition state prior to protonation from the less hindered face. Acid-mediated epimerization at C9 of 230 yielded compound 231, which was transformed
PDF
Album
Review
Published 18 Sep 2025

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

  • Margherita Gazzotti,
  • Fabrizio Medici,
  • Valerio Chiroli,
  • Laura Raimondi,
  • Sergio Rossi and
  • Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

Graphical Abstract
  • methanesulfonic acid, which acts as a strong Brønsted acid to selectively protonate the imine nitrogen atoms. This protonation step increases the electrophilicity of the adjacent imine carbons by inductive effect, leading to the formation of a highly reactive diiminium intermediate 4a. When formed, compound 4a is
PDF
Album
Supp Info
Full Research Paper
Published 12 Sep 2025

Photoswitches beyond azobenzene: a beginner’s guide

  • Michela Marcon,
  • Christoph Haag and
  • Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

Graphical Abstract
  • between hydrazone and pyridine can be broken by protonation with an acid and even by metal coordination, rendering these compounds photo- and acidochromic (Scheme 31) [102]. The equilibrium can also be modulated by introducing hydrogen-bond acceptors in R1 [107] or by introducing substituents to the
PDF
Album
Review
Published 08 Sep 2025

Research progress on calixarene/pillararene-based controlled drug release systems

  • Liu-Huan Yi,
  • Jian Qin,
  • Si-Ran Lu,
  • Liu-Pan Yang,
  • Li-Li Wang and
  • Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

Graphical Abstract
  • of supramolecular vesicles using WP6 and pyridine derivatives (G1) (Figure 4). This supramolecular system achieves controllable assembly and disassembly through pH responsiveness: under acidic conditions (pH 6.0), protonation of the WP6 carboxyl groups leads to vesicle disassembly; whereas in a
  • hydrophobic alkyl chain core. The assembly driving force directly relies on the host–guest interaction between WP6 and FC. Further studies have shown that by regulating the deprotonation/protonation state of the WP6 carboxyl groups through pH control, the reversible dissociation and reassembly of the vesicle
PDF
Album
Review
Published 03 Sep 2025

Influence of the cation in hypophosphite-mediated catalyst-free reductive amination

  • Natalia Lebedeva,
  • Fedor Kliuev,
  • Olesya Zvereva,
  • Klim Biriukov,
  • Evgeniya Podyacheva,
  • Maria Godovikova,
  • Oleg I. Afanasyev and
  • Denis Chusov

Beilstein J. Org. Chem. 2025, 21, 1661–1670, doi:10.3762/bjoc.21.130

Graphical Abstract
  • the DFT calculations (Scheme 5, Figure 2). Firstly, reductive amination of an aldehyde started from a nucleophilic addition of the amine to the carbonyl group of the aldehyde. In the presence of acid, this step could occur via acidic catalysis involving a protonation step of an amine (Step_2) or
  • protonation of an aldehyde (Step_2’). Due to the higher basicity of the secondary amine compared with the carbonyl group of benzaldehyde, protonation of dimethylamine was the main reaction pathway (30.9 vs −2.6 kcal/mol). However, it was found that the protonation of the carbonyl group led to a great
  • weakly nucleophilic secondary ammonium cation to the carbonyl group occurred with ΔEa = 11.5 kcal/mol (TS2→3). In recent DFT [39] and experimental [40] studies on the reductive amination reaction it was postulated that this protonation of amine played a key role in the catalytic cycle especially in the
PDF
Album
Supp Info
Full Research Paper
Published 20 Aug 2025
Other Beilstein-Institut Open Science Activities