Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• , unlike type-II photosensitizers. In fact, the representative compound 3f is a more efficient DNA-damaging photosensitizer under anaerobic conditions, which may be an advantage for applications in hypoxic cancer cells. Preliminary investigations of the mechanism of the DNA damage revealed the involvement

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• cells within the concentration range. This indicates the low cytotoxicity of these compounds. Meanwhile, compounds 3m,l are characterized by a borderline inhibition of cell culture viability. Attention is drawn to the increased toxic effect of 3m on cells of tumor origin, in comparison with normal human

• embryonic cells. Identification of the cause of the registered selective toxicity of the tested compounds requires further study. Conclusion Thus, we have introduced an effective base-catalyzed tandem reaction including a Cornforth-type rearrangement of 1-heteroaryl-1,2,3-triazole-4-carboximidamides and

• -substituted-1,2,3-triazoles, widening the synthetic applications of both azides and derivatives of acrylonitrile. Some of the prepared compounds exhibited a mild toxic effect on tumor cells in comparison with normal human embryonic cells. Experimental 3,3-Diaminoacrylonitriles 1b and 1f were synthesized from

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• NAD(P)-dependent oxidoreductase, suggesting that the denitrification activity of AvaA7 is not an artifact and that AvaA7-catalyzed denitrification is a genuine reaction in bacterial cells (Figure S6 in Supporting Information File 1 and Table 2). Discussion In the present study, we showed that the cma

• OD600 reached 0.8. After the culture was cooled on ice for 30 min, isopropyl β-ᴅ-thiogalactopyranoside (IPTG) was added to the culture (for CmaA1 and CmaA3 expression, final concentration was 100 µM; for CmaA6 expression, IPTG was not added) and incubated with shaking (150 rpm) at 15 °C for 20 h. Cells

• were harvested by centrifugation and suspended in lysis buffer (20 mM HEPES-NaOH, 10% glycerol, and 200 mM NaCl2; pH 8.0). The cells were disrupted by sonication on ice, and cell debris was removed by centrifugation. The recombinant protein was purified using His60 Ni Superflow Resin (TaKaRa Bio Inc

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• ™4Blunt-TOPO™ vector (step 4, Figure 1), and transformed into NEB® 5-alpha chemically competent cells (step 5). The transformed cells were plated on agar plates containing kanamycin and grown overnight. For each construct, the insert of 32 colonies was amplified with colony PCR using vector M13 forward

• full-length 800 bp GFP gene construct was transformed into NEB® 5-alpha chemically competent cells (step 7', Figure 1). The transformed cells were plated on kanamycin plates and grown at 37 °C overnight. Colony PCR was carried out over selected colonies, and the PCR products were analyzed with agarose

• alignments). Plasmid DNAs from these confirmed clones were used for GFP expression experiments described below. The authentic 800 bp dsODN GFP gene from commercial source was also assembled into the pF1k vector using Gibson assembly and transformed into NEB® 5-alpha cells. Colony PCR and agarose gel

Thienothiophene-based organic light-emitting diode: synthesis, photophysical properties and application

• Recep Isci and
• Turan Ozturk

Beilstein J. Org. Chem. 2023, 19, 1849–1857, doi:10.3762/bjoc.19.137

• ) [14][15][16][17][18][19]. These compounds are electron-rich, flat and electron-delocalized systems, properties that make them promising materials for the construction of conjugated energy-based semiconductors for OLEDs [20][21][22][23], perovskite solar cells [24][25], organic field-effect transistors

Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors

• Yordanka Mollova-Sapundzhieva,
• Plamen Angelov,
• Danail Georgiev and
• Pavel Yanev

Beilstein J. Org. Chem. 2023, 19, 1804–1810, doi:10.3762/bjoc.19.132

• monoamine oxidase [14], cytotoxicity against cancer cell lines [15], activity against nuclear factor of activated T cells [16], and anti-inflammatory activity [17]. Alkaloids with similar structure and anti-inflammatory activity have been isolated from another member of the Rutaceae family – Zanthoxylum

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• ]. The study also found that those coordination compounds were selective towards abnormal cells, exhibiting lower toxicity for healthy human hepatocytes. On the other hand, an important development in cancer research is the use of physiological metal ion complexes, which afford more biocompatibility and

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• Abstract This review article provides a comprehensive overview of recent advancements in electron transport materials derived from quinoxaline, along with their applications in various electronic devices. We focus on their utilization in organic solar cells (OSCs), dye-sensitized solar cells (DSSCs

• processability compared to their inorganic counterparts [1][2]. Charge transport in organic semiconductors is a fundamental aspect that governs the performance and functionality of various organic semiconductor devices, such as organic solar cells (OSCs), organic field-effect transistors (OFETs), organic light

• conversion efficiencies (PCEs) of over 12% in polymer solar cells (PCS) when paired with the IDT acceptor [15], over 16% with the Y6 acceptor [16][17] and a champion PCE of 21.2% in perovskite solar cells [18]. This outstanding performance is attributed to the versatile and tunable nature of the Qx moiety

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• no barriers between the active layer and the CIL interface, indicating efficient charge extractions. In addition, to further confirm the charge extraction and recombination, the PAIOS (platform for all-in-one characterization of solar cells) tool from Fluxim was used to measure transient photocurrent

• functions of ITO, PEDOT:PSS, and Ag [30], as well as the energy levels of PM6, Y6, and the energy level range for the CILs used in this study. a) Current density-voltage (I–V) characterization under illumination, b) spectral response of the solar cells, c) I–V characteristics under dark, d) photocurrent vs

Sulfur-containing spiroketals from Breynia disticha and evaluations of their anti-inflammatory effect

• Ken-ichi Nakashima,
• Naohito Abe,
• Masayoshi Oyama,
• Hiroko Murata and
• Makoto Inoue

Beilstein J. Org. Chem. 2023, 19, 1604–1614, doi:10.3762/bjoc.19.117

• effects of the isolated compounds were evaluated based on the mRNA levels of proinflammatory cytokines in lipopolysaccharide (LPS)-stimulated RAW 264.7 murine macrophage cells. Compounds 1, 2, 6, and 7 inhibited the increase in interleukin (IL)-1β and IL-6 mRNA levels stimulated by LPS. Moreover, the most

• potent compound 7 was found to significantly inhibit the production of IL-1β and IL-6 proteins, as revealed by the analysis of culture supernatants. Keywords: anti-inflammatory; Breynia disticha; RAW 264.7 cells; sesquiterpenoids; sulfur-containing compounds; Introduction Breynia disticha J.R.Forst

• compounds 1–3 and known spiroketal 4, which has not been fully characterized in previous reports [13]. Furthermore, the anti-inflammatory effects of compounds 1–3, 6, and 7 are evaluated using RAW 264.7 murine macrophage cells. Results and Discussion B. disticha roots were extracted with methanol (MeOH

Cyclodextrins permeabilize DPPC liposome membranes: a focus on cholesterol content, cyclodextrin type, and concentration

• Ghenwa Nasr,
• Hélène Greige-Gerges,
• Sophie Fourmentin,
• Abdelhamid Elaissari and
• Nathalie Khreich

Beilstein J. Org. Chem. 2023, 19, 1570–1579, doi:10.3762/bjoc.19.115

• can subsequently achieve the highest solubilization of CHOL [27], while the low-substituted derivatives (CRYSMEB in our case) were less cytotoxic and maintained the integrity of endothelial cells assuming a lower affinity to CHOL membrane compared to the other derivatives [23]. Furthermore, the

Synthesis and biological evaluation of Argemone mexicana-inspired antimicrobials

• Jessica Villegas,
• Bryce C. Ball,
• Katelyn M. Shouse,
• Caleb W. VanArragon,
• Ashley N. Wasserman,
• Hannah E. Bhakta,
• Allen G. Oliver,
• Danielle A. Orozco-Nunnelly and
• Jeffrey M. Pruet

Beilstein J. Org. Chem. 2023, 19, 1511–1524, doi:10.3762/bjoc.19.108

• cells [9]. The quantification of c-MYC (oncogene) and APC (tumor suppressor) mRNA levels helped begin to elucidate how the A. mexicana root methanol extract may be affecting colon cancer cells. After chromatographic separations, UPLC–MS, and subsequent nuclear magnetic resonance analysis of the root and

• markedly less potent towards fungi. Though antifungal properties are desirable, selectivity for prokaryotic over eukaryotic cells would be beneficial for a selective antibacterial treatment. A two-tailed T-test analysis (with significance set at P ≤ 0.05). revealed that these differences in activity for

• , though it may be partially responsible for why variant B14 was significantly more potent. Having preliminarily explored the antimicrobial activity of these variants, we next turned to investigating their effects on tumor cells, given our previous research had identified antitumor properties for the crude

Visible-light-induced nickel-catalyzed α-hydroxytrifluoroethylation of alkyl carboxylic acids: Access to trifluoromethyl alkyl acyloins

• Feng Chen,
• Xiu-Hua Xu,
• Zeng-Hao Chen,
• Yue Chen and
• Feng-Ling Qing

Beilstein J. Org. Chem. 2023, 19, 1372–1378, doi:10.3762/bjoc.19.98

• experiments showed that trifluoromethyl acyloins can selectively induce apoptosis in human oral cancer cells [22][23] and have therefore attracted much more attention. However, trifluoromethyl acyloins were not widely used due to the challenge associated with their synthesis. Certain progress has been made in

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• that now produces more accurate quantification of lipids with a distinction of neutral EL and phosphoglycero ELs produced contradictory data. Indeed, a recent study that focused on ether glycerophospholipids (alkyl and alkenyl ether lipids) indicates that in breast cancer cells (average of 9 breast

• cancer cell lines) the PC and PE ether lipids (alkyl and alkenyl together) were down regulated when compared to normal cells (MCF10A) with some variation in the different classes of lipid (PC, PE, PI, PS) [16]. However, alkylglyceronephosphate synthase (AGPS) is highly expressed in aggressive breast

• (231MFP), melanoma (C8161) and prostate cancer (PC3) cells compared with less aggressive cancer cells (MCF7, MUM2C, and LNCaP, respectively) suggesting that AGPS is an important player in the aggressiveness of cancers [17]. It was also suggested to use ELs as biomarkers for some human diseases like

Unravelling a trichloroacetic acid-catalyzed cascade access to benzo[f]chromeno[2,3-h]quinoxalinoporphyrins

• Chandra Sekhar Tekuri,
• Pargat Singh and
• Mahendra Nath

Beilstein J. Org. Chem. 2023, 19, 1216–1224, doi:10.3762/bjoc.19.89

• quinoxalinoporphyrins displayed a wide range of applications in many fields including molecular electronics [8][9][10]. Additionally, appropriately functionalized quinoxalinoporphyrin-based photosensitizers are of great interest in the area of dye-sensitized solar cells (DSSC) due to their strong absorption in the

Enabling artificial photosynthesis systems with molecular recycling: A review of photo- and electrochemical methods for regenerating organic sacrificial electron donors

• Grace A. Lowe

Beilstein J. Org. Chem. 2023, 19, 1198–1215, doi:10.3762/bjoc.19.88

• bringing together the 2 halves of artificial photosynthesis include photoelectrochemical cells and artificial leaves, single molecule/particle photocatalysts, photovoltaic-powered electrochemical cells, and biophotoelectrochemical cells [8][9]. Some of these systems, like natural photosynthesis, are

• ]. It is important to note that unless special electrodes (ultra microelectrodes) or cells are used, voltammetric measurements of redox potentials require an ionically conductive salt to be added to the solution [19]. Oxidation and reduction potentials can vary with factors such as pH [14][15] and

• photocatalyst which re-reduced DcMFc and evolved oxygen. The same reaction scheme was used but in a modified H-cell (Figure 2B) [35]. Both catalysts were confined at the ITIES in two separate chambers and the redox mediator diffused between the two cells via the organic phase. The protons for hydrogen evolution

Cyanothioacetamides as a synthetic platform for the synthesis of aminopyrazole derivatives

• Valeriy O. Filimonov,
• Alexandra I. Topchiy,
• Vladimir G. Ilkin,
• Tetyana V. Beryozkina and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2023, 19, 1191–1197, doi:10.3762/bjoc.19.87

• molecules that attack and destroy lipids and protein membranes of weed cells [10]. Fipronil is an inhibitor of GABA receptors and affects the nervous system of insects as a broad-spectrum insecticide [11][12]. On the other hand, thioamides are an important class of organic compounds. 6-Thioguanine and

Two new lanostanoid glycosides isolated from a Kenyan polypore Fomitopsis carnea

• Winnie Chemutai Sum,
• Sherif S. Ebada,
• Didsanutda Gonkhom,
• Cony Decock,
• Rémy Bertrand Teponno,
• Josphat Clement Matasyoh and
• Marc Stadler

Beilstein J. Org. Chem. 2023, 19, 1161–1169, doi:10.3762/bjoc.19.84

• values recorded at 16.6 µg/mL and 0.21 µg/mL, respectively. Compounds 1, 2, and 4 exhibited no cytotoxic effects against highly sensitive mammalian cell lines namely; mouse fibroblasts (L929) and human endocervical adenocarcinoma cells (KB3.1), hence no further tests were made on the other cell lines

• (Table S1 in Supporting Information File 1). However, 3-epipachymic acid (3) demonstrated significant cytotoxicity against epidermoid carcinoma cells (A431) (IC50 = 5.7 µM) and HeLa cells (KB-3-1) (IC50 = 7.0 µM). Moderate cytotoxic effects for compound 3 were also recorded against mouse fibroblasts

• (L929) (IC50 = 15.2 µM), breast cancer cells (MCF-7) (17.6 µM), and prostate cancer cells (PC-3) (18.9 µM). Discussion The introduction of a hydroxy group at C-2 rendered forpinioside C (2) inactive in antimicrobial assays compared to forpinioside B (1), however; both compounds were not active in the

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

• hand, PEC reactions require tailor-made reactors that present technical challenges, although in principle these challenges are surmountable by adapting engineering from the already well-established fields of PEC water splitting/fuel cells/photovoltaic fields. So far, the examples of large-scale

Five new sesquiterpenoids from agarwood of Aquilaria sinensis

• Hong Zhou,
• Xu-Yang Li,
• Hong-Bin Fang,
• He-Zhong Jiang and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 998–1007, doi:10.3762/bjoc.19.75

• from agarwood. Unfortunately, none of the new compounds exhibits biological activity against LPS-induced inflammation in Raw264.7 cells and human breast cancer cells. However, we have drawn good conclusions for SAR studies based on the current study and our previous study. These compounds will be

Clauson–Kaas pyrrole synthesis using diverse catalysts: a transition from conventional to greener approach

• Dileep Kumar Singh and
• Rajesh Kumar

Beilstein J. Org. Chem. 2023, 19, 928–955, doi:10.3762/bjoc.19.71

• –98% yields by reacting various amines 60 and 2,5-DMTHF 2 under solvent-free conditions in the presence of 5 mol % molecular iodine as catalyst (Scheme 29a). These synthesized products were tested against various cancer cells in vitro. In the proposed mechanism, deprotection of the methoxy group of

Non-peptide compounds from Kronopolites svenhedini (Verhoeff) and their antitumor and iNOS inhibitory activities

• Yuan-Nan Yuan,
• Jin-Qiang Li,
• Hong-Bin Fang,
• Shao-Jun Xing,
• Yong-Ming Yan and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 789–799, doi:10.3762/bjoc.19.59

• methods. Selected compounds were evaluated for their biological properties against a mouse pancreatic cancer cell line and inhibitory effects on iNOS and COX-2 in RAW264.7 cells. Keywords: arthropod; iNOS; Kronopolites svenhedini (Verhoeff); non-peptide small molecules; Introduction The millipede (class

• compounds, cytotoxic and anti-inflammatory properties were evaluated. In particular, a mouse pancreatic cancer cell line (Panc02-h7-GP-GFP) was used to determine cytotoxicity. Additionally, LPS-induced pro-inflammatory expression of iNOS and COX-2 in RAW264.7 cells was evaluated. Antitumor activity of

• compounds 1–5, 7, and 8 was assessed via a cell proliferation assay using Panc02-h7-GP-GFP cells. Unfortunately, none of the compounds did inhibit the proliferation of Panc02-h7-GP-GFP cells at a concentration of 20 μM (Figure S41 in Supporting Information File 1). On the other hand, an enhancement of CD8

Strategies in the synthesis of dibenzo[b,f]heteropines

• David I. H. Maier,
• Barend C. B. Bezuidenhoudt and
• Charlene Marais

Beilstein J. Org. Chem. 2023, 19, 700–718, doi:10.3762/bjoc.19.51

• ; synthesis; Introduction The dibenzo[b,f]azepine (1a) scaffold (Figure 1) is featured in commercial pharmaceuticals [1] and other lead compounds [2][3][4], ligands [5][6] and in materials science with possible applications in organic light emitting diodes (OLEDs) [7] and dye-sensitized solar cells (DSSCs

• )-10,11-dihydro-5H-dibenzo[b,f]azepine-2,8-diyl)bis(N,N-diphenylaniline) (9) exhibits properties suitable for the use in organic light emitting diodes [7] whereas dyes 10–12 were found suitable for the use in dye-sensitised solar cells (Figure 4) [8][9][10]. Though analogous dibenzo[b,f]oxepines 1b, with

• dibenzo[b,f]heteropine template is an important feature in several commercial and lead active pharmaceutical ingredients, biologically active natural products, dyes in OLEDs and dye sensitive solar cells, and in certain ligands. This review provides an overview of the different synthetic strategies

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• cellular uptake and intracellular distribution of Phen-Py-1 in HeLa cells by TCS SP8 X confocal microscopy. The results showed that the dye entered the HeLa cell membranes fast, and after 1 hour of incubation at 1 µM concentration, blue fluorescence was visualized as the dye accumulated in the cell

• membrane (Figure S26, Supporting Information File 1). The compound showed not to be toxic to the HeLa cells as no visible damage was detected. Interactions of Phen-Py-1 and Phen-Py-2 with ds-polynucleotides and enzyme dipeptidyl peptidase III in an aqueous medium Interactions of Phen-Py-1 and Phen-Py-2

• binding (∆rH). The reaction Gibbs energies (∆rG) were calculated by using the following equation: ∆rG = −RTln(Ka). The entropic contribution to the binding Gibbs energy was calculated by the equation: T∆rS = ∆rH − ∆rG. Confocal microscopy: HeLa cells were cultured and maintained in complete high glucose

Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• ]. Cathepsin C is an emerging pharmacological target due to its involvement in inflammatory and autoimmune diseases. Cathepsin C is upregulated in immune-related cells. DPPI also plays a role in the development of cancer – particularly in the liver and breast, hence the potential contribution of its inhibitors