Recent progress in the racemic and enantioselective synthesis of monofluoroalkene-based dipeptide isosteres

• Myriam Drouin and
• Jean-François Paquin

Beilstein J. Org. Chem. 2017, 13, 2637–2658, doi:10.3762/bjoc.13.262

• material to confirm that the process did not induce any epimerization. This methodology was then extended to the synthesis Gly-ψ[(E)-CF=CH]-Gly (not shown). Finally, Dory and co-workers reported the synthesis of Fmoc-Gly-ψ[(Z)-CF=CH]-Phe (Scheme 9) [36].Their work was inspired by the methodology reported

• -Ser-Phe-Arg-Phe-NH2 and Gly-ψ[(E)-CF=CH]-Gly-Phe-Ser-Phe-Arg-Phe-NH2 (see Scheme 7), representing the seven last amino acids of the neuropeptide 26Fra [34]. For the analogue containing the Gly-ψ[(Z)-CF=CH]-Phe isostere, epimerization was observed during last stages of the synthesis. The two

• isomerization or epimerization, cyclic pseudopeptides using Fmoc SPPS [48][50]. Biological studies were conducted on monofluoroalkene-containing analogues of FC131, which is a known antagonist of the chemokine receptor CXCR4. The latter has implications in cancer metastasis and HIV 1 infection. Anti-HIV 1

A permutation approach to the assignment of the configuration to diastereomeric tetrads by comparison of experimental and ab initio calculated differences in NMR data

• Przemysław J. Boratyński

Beilstein J. Org. Chem. 2017, 13, 2478–2485, doi:10.3762/bjoc.13.245

• 1 and 2 were obtained by epimerization at C9. Mixtures of the isomers of 1 were formed in TBAF desilylation of Cinchona 4-TMS-triazole derivatives. Partial isomerisation of 2a into 2b was performed by transient deprotonation using in situ generated sodium methylsulfinylmethylide (Scheme 1). Both

Hydrolysis, polarity, and conformational impact of C-terminal partially fluorinated ethyl esters in peptide models

• Vladimir Kubyshkin and
• Nediljko Budisa

Beilstein J. Org. Chem. 2017, 13, 2442–2457, doi:10.3762/bjoc.13.241

• partial epimerization of the residue. Finally, ester 4 was prepared by treatment of 6 with 3 equivalents of the 2,2-difluorodiazoethane (Scheme 1C). The reaction was performed smoothly using chloroform as a solvent giving a good yield (94%). We also attempted to perform the reaction in an acetonitrile

Asymmetric synthesis of propargylamines as amino acid surrogates in peptidomimetics

• Matthias Wünsch,
• David Schröder,
• Tanja Fröhr,
• Lisa Teichmann,
• Sebastian Hedwig,
• Nils Janson,
• Clara Belu,
• Jasmin Simon,
• Shari Heidemeyer,
• Philipp Holtkamp,
• Jens Rudlof,
• Lennard Klemme,
• Alessa Hinzmann,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2017, 13, 2428–2441, doi:10.3762/bjoc.13.240

• amino acid analogues [22][23]. However, epimerization in the α-position frequently occurs under the alkaline reaction conditions of the Seyferth–Gilbert and the Corey–Fuchs reaction. In order to access propargylamines with modified side chains, we chose a de novo synthesis strategy, using Ellman’s

• ], it provides a versatile protective group for the amine during the conversion of the alkyne. Additionally, it’s chirality indicates epimerization and, for example in the Pauson–Khand reaction [14], allows the determination of the stereoselectivity of asymmetric conversions by simple 1H NMR experiments

Synthesis of ergostane-type brassinosteroids with modifications in ring A

• Vladimir N. Zhabinskii,
• Darya A. Osiyuk,
• Yuri V. Ermolovich,
• Natalia M. Chaschina,
• Tatsiana S. Dalidovich,
• Miroslav Strnad and
• Vladimir A. Khripach

Beilstein J. Org. Chem. 2017, 13, 2326–2331, doi:10.3762/bjoc.13.229

• the epimerization of the hydroxy group at C-2/C-3 is the inactivation process contributing to a constant level of the active phytohormone. 2β,3β-Diols 6 are available through Woodward–Prévost cis-dihydroxylation of Δ2-steroids 3 [21]. The diaxial diols 7 can be easily synthesized by an acid-catalyzed

Homologated amino acids with three vicinal fluorines positioned along the backbone: development of a stereoselective synthesis

• Raju Cheerlavancha,
• Ahmed Ahmed,
• Yun Cheuk Leung,
• Aggie Lawer,
• Qing-Quan Liu,
• Marina Cagnes,
• Hee-Chan Jang,
• Xiang-Guo Hu and
• Luke Hunter

Beilstein J. Org. Chem. 2017, 13, 2316–2325, doi:10.3762/bjoc.13.228

• next deoxyfluorination reaction (Scheme 4). Gratifyingly, the p-nitro group of 39a was found to completely shut down the neighbouring group participation pathway; the desired trifluoroalkane 40a was obtained in good yield with no evidence of rearrangement or epimerization. It was also possible to

A mechanochemical approach to access the proline–proline diketopiperazine framework

• Nicolas Pétry,
• Hafid Benakki,
• Eric Clot,
• Pascal Retailleau,
• Farhate Guenoun,
• Fatima Asserar,
• Chakib Sekkat,
• Thomas-Xavier Métro,
• Jean Martinez and
• Frédéric Lamaty

Beilstein J. Org. Chem. 2017, 13, 2169–2178, doi:10.3762/bjoc.13.217

• the presence of EDC (coupling agent), a base and a small amount [29] of EtOAc as liquid grinding assistant. The role of oxyma was mainly to suppress amino acid epimerization during the coupling, a limited problem in the case of proline. Consequently, our first experiments did not involve this reagent

• it would avoid a potential pressure build-up (release of CO2) which could occur with NaHCO3. Noteworthy, no epimerization could be detected by NMR or HPLC analyses. Both peptides 7 and 8 were then deprotected and cyclized into the corresponding diketopiperazine 9. Palladium-catalyzed hydrogenolysis

Phenylsilane as an effective desulfinylation reagent

• Wanda H. Midura,
• Aneta Rzewnicka and
• Jerzy A. Krysiak

Beilstein J. Org. Chem. 2017, 13, 1513–1517, doi:10.3762/bjoc.13.150

• 4 under conditions used by us before, i.e., by treatment with isopropylmagnesium chloride, gave a mixture of diastereomers 7a and 7b. It was probably due to epimerization on carbon C2 of the carbanion, formed after attack of the Grignard reagent on sulfur. To our satisfaction, utilization of the

• desulfinylation process leading to ester 11 [24]. Unfortunately in this case the stereogenic center at the carbon undergoes epimerization under these reaction conditions and 11 is obtained in racemic form. To study the scope and limitation of the silane reactivity and its selectivity we checked the influence of

A new member of the fusaricidin family – structure elucidation and synthesis of fusaricidin E

• Marcel Reimann,
• Louis P. Sandjo,
• Luis Antelo,
• Eckhard Thines,
• Isabella Siepe and
• Till Opatz

Beilstein J. Org. Chem. 2017, 13, 1430–1438, doi:10.3762/bjoc.13.140

• ). Unfortunately, we observed two signal sets in NMR spectra (intensity 3:1) for the product which could not be attributed to conformers or rotamers as evidenced by variable temperature and NOESY NMR experiments. These results, and the fact that Cochrane also reported problems due to epimerization during

• macrolactonization suggested that a partial loss of stereochemical integrity had taken place during either cyclization or esterification [11]. The site of epimerization could not be determined with certainty, but most likely, the D-Ala residue was affected. As the assumed diastereomers could not be observed or

Synthesis of the heterocyclic core of the D-series GE2270

• Christophe Berini,
• Thibaut Martin,
• Pierrik Lassalas,
• Francis Marsais,
• Christine Baudequin and
• Christophe Hoarau

Beilstein J. Org. Chem. 2017, 13, 1407–1412, doi:10.3762/bjoc.13.137

• side-hydrolysis of sensitive functions, as well as epimerization of stereocenters [25]. The first condensation step leading to the thiazoline intermediate was successfully achieved, although in the presence of molecular sieves without KHCO3. The latter was then immediately dehydrated at low temperature

An improved preparation of phorbol from croton oil

• Alberto Pagani,
• Simone Gaeta,
• Andrei I. Savchenko,
• Craig M. Williams and
• Giovanni Appendino

Beilstein J. Org. Chem. 2017, 13, 1361–1367, doi:10.3762/bjoc.13.133

• glycerol obtained after hydrolysis of the oil and washing with organic solvents must be evaporated with care, maintaining an acidic pH to minimize epimerization to 4α-phorbol [19]. Next, the recovery of phorbol from the resulting ca 10% solution of phorboids in glycerol is difficult under both normal- and

• was accompanied by partial epimerization to 4α-phorbol (2a) and erosion of the overall final yield. To streamline the recovery of phorbol in the deacylation step, croton oil was treated with sodium methylate. By replacing hydrolysis with transesterification, it was possible to remove fats from the

• detoxified reaction mixture by extraction with petroleum ether, making dilution with water unnecessary. Provided that the pH of the reaction did not exceeded 13, retro-aldol epimerization was also negligible, and undetectable by TLC control. Evaporation of methanol was straightforward and gave a solution of

Glycoscience@Synchrotron: Synchrotron radiation applied to structural glycoscience

• Serge Pérez and
• Daniele de Sanctis

Beilstein J. Org. Chem. 2017, 13, 1145–1167, doi:10.3762/bjoc.13.114

• of the later, many sources of structural micro-heterogeneities occur as the epimerization at the C-5 position of uronic acids, and N- and O-sulfation. Of paramount interest is the elucidation of the role of GAGs in their interactions with such important proteins as extracellular matrix proteins

Polyketide stereocontrol: a study in chemical biology

• Kira J. Weissman

Beilstein J. Org. Chem. 2017, 13, 348–371, doi:10.3762/bjoc.13.39

• investigated under more controlled conditions in vitro. Critically, the researchers were able to generate exclusively 14C-(2S)- or (2R)-methylmalonyl-CoA (7 and 8, respectively) by enzymatically removing the enantiomeric substrate under conditions designed to minimize spontaneous epimerization. Using the

• . Indeed, selection of the (2S)-isomer, and correspondingly, the (2R) isomer of aminomalonyl-ACP, would simplify the biosynthetic mechanism in a number of polyketide pathways, as subsequent epimerization of the resulting pendant centers (vide infra) would not be required. Ketosynthases The next step in the

• additional epimerization step must occur in module 1 to yield the L-methyl stereochemistry present at C-4 (thus explaining the loss of deuterium from the 2-position when (2RS)-[2-2H]methylmalonyl-CoA was used, and its incorporation from solvent in the presence of unlabeled extender) (mechanism III, Figure 9

A new and expeditious synthesis of all enantiomerically pure stereoisomers of rosaprostol, an antiulcer drug

• Wiesława Perlikowska,
• Remigiusz Żurawiński and
• Marian Mikołajczyk

Beilstein J. Org. Chem. 2016, 12, 2234–2239, doi:10.3762/bjoc.12.215

• desired (+)-trans-6 isomer contaminated with very small amounts (4%) of the cis-isomer. Under the same reduction/epimerization conditions, (+)-(S)-5 was successfully transformed into (−)-trans-6 containing 7% of the corresponding cis isomer. Alkaline hydrolysis of both enantiomeric methyl esters (+)-6 and

Three-component synthesis of highly functionalized aziridines containing a peptide side chain and their one-step transformation into β-functionalized α-ketoamides

• Lena Huck,
• Juan F. González,
• Elena de la Cuesta and
• J. Carlos Menéndez

Beilstein J. Org. Chem. 2016, 12, 1772–1777, doi:10.3762/bjoc.12.166

• materials 1 is expected to afford intermediates 3. Although 3 may be formed as a mixture of diastereomers because of the epimerization of the initial adduct, as described in a literature precedent on a similar reaction [24], this is of no consequence for the outcome of the reaction. The next step would

Stereoselective synthesis of tricyclic compounds by intramolecular palladium-catalyzed addition of aryl iodides to carbonyl groups

• Jakub Saadi,
• Christoph Bentz,
• Kai Redies,
• Dieter Lentz,
• Reinhold Zimmer and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2016, 12, 1236–1242, doi:10.3762/bjoc.12.118

• in Schemes 4–6. Surprisingly, the presence of excess of the base triethylamine and the fairly long reaction times do not lead to noticeable epimerization of the precursor γ-ketoesters that would lead to an erosion of the observed stereoselectivity. In all examples the methoxycarbonyl group and the

Conjugate addition–enantioselective protonation reactions

• James P. Phelan and
• Jonathan A. Ellman

Beilstein J. Org. Chem. 2016, 12, 1203–1228, doi:10.3762/bjoc.12.116

• developed organocatalytic conjugate addition–enantioselective protonations of α,β-unsaturated imides using thiols. Thiols are attractive nucleophiles due to their acidity, which facilitates deprotonation by amine bases and also reduces undesired competitive deprotonation and epimerization of the enolizable

Chiral cyclopentadienylruthenium sulfoxide catalysts for asymmetric redox bicycloisomerization

• Barry M. Trost,
• Michael C. Ryan and
• Meera Rao

Beilstein J. Org. Chem. 2016, 12, 1136–1152, doi:10.3762/bjoc.12.110

• for either coordination mode, which leads to poorer enantioselectivities in THF (Table 8, entry 6). We propose that acetone, being more Lewis basic than THF, has the effect of epimerizing the chiral-at-ruthenium intermediates formed prior to [2 + 2] cycloaddition. The rate of epimerization is much

• coordination. The pendant olefin prefers to approach the carbene anti to the aforementioned sulfoxide, resulting in the observed enantiomer of 53. In THF, the rate of epimerization is significantly slower than the [2 + 2] cycloaddition, which means that the enantiomeric ratios observed in the products are

Synthesis and in vitro cytotoxicity of acetylated 3-fluoro, 4-fluoro and 3,4-difluoro analogs of D-glucosamine and D-galactosamine

• Štěpán Horník,
• Lucie Červenková Šťastná,
• Petra Cuřínová,
• Jan Sýkora,
• Kateřina Káňová,
• Roman Hrstka,
• Ivana Císařová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2016, 12, 750–759, doi:10.3762/bjoc.12.75

• gave fluorhydrin 20 which was subjected to epimerization at C-4 by Latrell–Dax inversion to furnish 2-azido-3-fluoro compound 21 with the desired D-galacto configuration (Scheme 3). The geminal fluorine–carbon coupling value 2JC4,F = 17.7 Hz in 21 is characteristic for a gauche relationship between the

The aminoindanol core as a key scaffold in bifunctional organocatalysts

• Isaac G. Sonsona,
• Eugenia Marqués-López and
• Raquel P. Herrera

Beilstein J. Org. Chem. 2016, 12, 505–523, doi:10.3762/bjoc.12.50

• reaction that leads to the final cis-product 21. The thermodynamically favorable trans-product 21 can be obtained through a tetramethylguanidine (TMG)-catalyzed epimerization process. Other possible electrophiles have been contemplated in the Friedel–Crafts alkylation of indoles. For instance, Jørgensen’s

(Thio)urea-mediated synthesis of functionalized six-membered rings with multiple chiral centers

• Giorgos Koutoulogenis,
• Nikolaos Kaplaneris and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2016, 12, 462–495, doi:10.3762/bjoc.12.48

• epimerization to the sole product 193. Their postulation is based on the fact that Henry reactions are typically reversible, so 194 and 195 could be involved in a retro-Henry and subsequent diastereoselective Henry reaction, where the stereochemical outcome is inducted by the C2 stereochemistry. This is further

Diastereoselective Ugi reaction of chiral 1,3-aminoalcohols derived from an organocatalytic Mannich reaction

• Samantha Caputo,
• Andrea Basso,
• Lisa Moni,
• Renata Riva,
• Valeria Rocca and
• Luca Banfi

Beilstein J. Org. Chem. 2016, 12, 139–143, doi:10.3762/bjoc.12.15

• /epimerization can again be an issue in special cases [24]. However, the use of amines as chiral auxiliaries has been seldom exploited in peptidomimetic synthesis [16][25][26] because the need to remove the auxiliary reduces the number of diversity inputs and increases the number of synthetic steps. From the

Recent highlights in biosynthesis research using stable isotopes

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2015, 11, 2493–2508, doi:10.3762/bjoc.11.271

• additional modifying modules, e.g., epimerization domains, resulting in a greater structural variety than ribosomal peptides usually have. Two examples are the membrane disrupting decapeptide antibiotic tyrocidine A (14) [34] and teixobactin (15) [35], a recently discovered multi-target antibiotic rising

• promoter exchange [45] in the native host. Bioinformatics allowed for the annotation of several epimerization domains in the kollosin A NRPS, but it is hard to determine the actual activity of each of these functions. To overcome this problem, L-[2H8]valine, L-[2H10]leucin, L-[2H7,15N]tyrosine und L

• -[2H5,15N]threonine were fed to P. luminescens. The loss of one deuterium atom for an incorporated labeled amino acid (from Cα) directly supports an epimerase function within the corresponding NRPS module, and the incorporated building block can be assigned as D-configured. In this example, epimerization

Structure and conformational analysis of spiroketals from 6-O-methyl-9(E)-hydroxyiminoerythronolide A

• Ana Čikoš,
• Irena Ćaleta,
• Dinko Žiher,
• Mark B. Vine,
• Ivaylo J. Elenkov,
• Marko Dukši,
• Dubravka Gembarovski,
• Marina Ilijaš,
• Snježana Dragojević,
• Ivica Malnar and
• Sulejman Alihodžić

Beilstein J. Org. Chem. 2015, 11, 1447–1457, doi:10.3762/bjoc.11.157

• each of E isomers goes through an oxocarbenium type transition state that have different stereochemistry on C-8. That reflects in formation of the two isomeric products 3 and 4, with the latter anomerically stabilized and thermodynamically more stable. In this case the complete epimerization to 8S

Novel stereocontrolled syntheses of tashiromine and epitashiromine

• Loránd Kiss,
• Enikő Forró and
• Ferenc Fülöp

Beilstein J. Org. Chem. 2015, 11, 596–603, doi:10.3762/bjoc.11.66

• -aminocyclooctenecarboxylate (±)-3 underwent epimerization at C-1, leading after 18 h to an equilibrium mixture of cis and trans amino esters (1:1 ratio determined by 1H NMR on the crude mixture), the required trans isomer (±)-7 being separated from the cis counterpart and isolated in a yield of 48% by means of column

• chromatography on silica gel (n-hexane/EtOAc 1:4) to give the dihydroxylated amino ester. General procedure for epimerization of the cis-amino ester To a solution of cis N-protected amino ester ((±)-3 or (−)-3) (3.3 mmol) in EtOH (30 mL), EtONa (1.5 equivalents) was added at 0 °C and the mixture was stirred at