Changed reactivity of secondary hydroxy groups in C8-modified adenosine – lessons learned from silylation

• Jennifer Frommer and
• Sabine Müller

Beilstein J. Org. Chem. 2020, 16, 2854–2861, doi:10.3762/bjoc.16.234

• neighboring silicon leads to silyl migration and consequently to an isomeric mixture, which can be separated by column chromatography [30]. However, this procedure does not secure high yields and the careful separation of a sufficient amount of the 2’-O-silyl isomers is rather time consuming. Additionally

• migration of the TBDMS protecting group and consequently formation of the 3’-O-TBDMS isomer under Sonogashira conditions, which accounts for the reduced yield. This certainly can be counteracted by further reducing the reaction temperature of the Sonogashira coupling. Under the conditions applied here

On the mass spectrometric fragmentations of the bacterial sesterterpenes sestermobaraenes A–C

• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2020, 16, 2807–2819, doi:10.3762/bjoc.16.231

• w1•+ to x1•+ (Scheme 2B). The inductive cleavage with hydride migration leads to y1•+ representing the minor fragment ion at m/z = 122 that may efficiently lose two hydrogens to give the conjugated system in z1•+. Fragmentation mechanisms for sestermobaraene B (2) The position-specific mass shift

• rearrangement to a2•+ and a hydride shift to b2•+ (Scheme 3A). This hydride migration is in reverse order compared to a similar step along the cationic cyclisation cascade during the biosynthesis of 2 (Scheme S1 in Supporting Information File 1). The subsequent inductive ring opening to c2•+ and α-cleavage of

• loss of C13 starts from 2•+ by a hydrogen rearrangement to l2•+ and an α-fragmentation to m2•+, followed by another hydrogen transfer to n2•+ and α-cleavage to o2+ (Scheme 4A). The second possibility with the loss of C1 is explainable from l2•+ by a hydrogen migration to p2•+ and an α-fragmentation to

Synthesis and characterization of S,N-heterotetracenes

• Astrid Vogt,
• Florian Henne,
• Christoph Wetzel,
• Elena Mena-Osteritz and
• Peter Bäuerle

Beilstein J. Org. Chem. 2020, 16, 2636–2644, doi:10.3762/bjoc.16.214

• formed during the cyclization reaction of 16 compared to phenyl nitrene [42]. Besides H-SN4 13, which is formed by insertion of the nitrene N-atom into the C3–H σ-bond of the thienothiophene in 16 and simultaneous migration of the H-atom to the nitrogen, mostly undefined black oligomeric or polymeric

Formation of an exceptionally stable ketene during phototransformations of bicyclo[2.2.2]oct-5-en-2-ones having mixed chromophores

• Asitanga Ghosh

Beilstein J. Org. Chem. 2020, 16, 2297–2303, doi:10.3762/bjoc.16.190

• like phenyl or isopropenyl at the bridgehead position were analyzed for the first time in different solvents and upon irradiation with different wavelengths. In all cases, a regioselective photoinduced 1,5-phenyl migration leading to vinyl ketenes from the more congested site of the molecule to the

• photoreactions of bridged bicyclic systems like 3a–g were carried out [9][10][11][12][13]. These molecules contain a δ-keto-α,β-enone system juxtaposed with a (cis)-dibenzoylalkene moiety. Interestingly, photoreactions of 3a–f were found to follow regioselective photoindiuced 1,5-phenyl migration from the more

• -phenyl migration have been found to be subtly dependent on the substitution pattern. For instance, the rate of 1,2-AS in 3b has been found to be much faster than the one of 3e. It is probably due to the extra hindrance of gem-dimethyl substituents at C-7 position in the latter. Moreover, only 1,2-AS

Synthetic approaches to bowl-shaped π-conjugated sumanene and its congeners

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2020, 16, 2212–2259, doi:10.3762/bjoc.16.186

• explained via the migration of the bromide ion followed by the aromatization of bromodienone compound 71 to the stable o-bromohydroxysumanene 72. Having compound 71 in hand, next it was treated with silver acetate in H2O/THF (1:1) to furnish compound 74. On the other hand, alcoholysis of the same compound

Regioselective cobalt(II)-catalyzed [2 + 3] cycloaddition reaction of fluoroalkylated alkynes with 2-formylphenylboronic acids: easy access to 2-fluoroalkylated indenols

• Tatsuya Kumon,
• Miroku Shimada,
• Jianyan Wu,
• Shigeyuki Yamada and
• Tsutomu Konno

Beilstein J. Org. Chem. 2020, 16, 2193–2200, doi:10.3762/bjoc.16.184

• -fluoroalkylated indanones are shown in Scheme 5 [28][38]. Thus, the reaction presumably proceeds as follows: (1) transmetalation of the cobalt catalyst with 2-formylphenylboronic acids (2) gives the arylcobalt species Int-1, (2) insertion of the alkyne 1 into the [Co]–Ar bond (see Int-2a) [39], (3) migration

Clustering and curation of electropherograms: an efficient method for analyzing large cohorts of capillary electrophoresis glycomic profiles for bioprocessing operations

• Ian Walsh,
• Matthew S. F. Choo,
• Sim Lyn Chiin,
• Amelia Mak,
• Shi Jie Tay,
• Pauline M. Rudd,
• Yang Yuansheng,
• Andre Choo,
• Ho Ying Swan and
• Terry Nguyen-Khuong

Beilstein J. Org. Chem. 2020, 16, 2087–2099, doi:10.3762/bjoc.16.176

• -throughput analysis [9]. In CE-LIF, released and fluorescently labelled glycans migrate over a capillary and are identified by comparison to the standardized migration time with external or internal oligosaccharide standards. In order to achieve standardized migration time in a high-throughput manner

• , migration time is generally calculated by correlation with internal standards that bracket the time of elution of the glycans of interest [10]. This process is used to calculate a glucose unit (GU) which helps to align the datasets so that the GU of each glycan can be used to identify the glycan through

• databases and software (among others) are discussed in a recent review [15]. A long standing problem associated with the analysis of large sets of electrophoretic data generated during bioprocessing is inevitably the drift of the peak migration time and area under the curve pertaining to glycan structures

Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• helps avoiding the problematic acyl migration often observed with similar molecules [28]. In addition, the 4,6-O-naphthylidene acetal (e.g., in compounds 23 and 30) can be regioselectively opened at O6 or O4 under different conditions [19][29]. This could potentially allow the incorporation of other

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• -1,8-naphthyridine analogues. The investigation initially began using commercially available N-Boc-protected tetrahydro-1,8-naphthyridine 8 [16]. Upon deprotonation and quenching with diethyl chlorophosphate, migration of the Boc group from the nitrogen atom to the exocyclic methyl group was observed

Heterogeneous photocatalysis in flow chemical reactors

• Christopher G. Thomson,
• Ai-Lan Lee and
• Filipe Vilela

Beilstein J. Org. Chem. 2020, 16, 1495–1549, doi:10.3762/bjoc.16.125

Highly selective Diels–Alder and Heck arylation reactions in a divergent synthesis of isoindolo- and pyrrolo-fused polycyclic indoles from 2-formylpyrrole

• Carlos H. Escalante,
• Eder I. Martínez-Mora,
• Carlos Espinoza-Hicks,
• Alejandro A. Camacho-Dávila,
• Fernando R. Ramos-Morales,
• Francisco Delgado and
• Joaquín Tamariz

Beilstein J. Org. Chem. 2020, 16, 1320–1334, doi:10.3762/bjoc.16.113

• 5–16). None of the series of mixtures 9a–p/10a–p corresponds to the direct products of the Diels–Alder cycloadditions, since they are derivatives resulting from the double bond isomerization of adducts 17 (i.e., migration from the pyrrole-fused exo cyclic position to the endo cyclic aromatic

Synthesis and properties of quinazoline-based versatile exciplex-forming compounds

• Rasa Keruckiene,
• Simona Vekteryte,
• Ervinas Urbonas,
• Matas Guzauskas,
• Eigirdas Skuodis,
• Dmytro Volyniuk and
• Juozas V. Grazulevicius

Beilstein J. Org. Chem. 2020, 16, 1142–1153, doi:10.3762/bjoc.16.101

• with the lifetimes of both components in the ns range. Thus, compounds 2 and 3 were characterized by prompt fluorescence and no delayed fluorescence was observed. The double-exponential decays were apparently related to the spectral diffusion (exciton migration and localization at lower energy states

Preparation of 2-phospholene oxides by the isomerization of 3-phospholene oxides

• Péter Bagi,
• Réka Herbay,
• Nikolett Péczka,
• Zoltán Mucsi,
• István Timári and
• György Keglevich

Beilstein J. Org. Chem. 2020, 16, 818–832, doi:10.3762/bjoc.16.75

• double bond migration pathways were elucidated by quantum chemical calculations. Keywords: chlorophosphonium salts; isomerization; 2-phospholene oxides; 3-phospholene oxides; quantum chemistry; Introduction P-Heterocyclic derivatives are valuable targets in synthetic organophosphorus chemistry [1][2][3

• corresponding 2-phospholene oxides 4a or 10 was in the range of 84–96% for the 3-methyl-, and in the range of 34–86% for the 3,4-dimethyl derivative indicating that the additional methyl groups at position 3 or 4 hinder the migration of the double bond. It is noteworthy, that in case of 1-phenyl-3,4-dimethyl-3

Synthesis of C₇₀-fragment buckybowls bearing alkoxy substituents

• Yumi Yakiyama,
• Shota Hishikawa and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2020, 16, 681–690, doi:10.3762/bjoc.16.66

• is formed. Two competitive processes, the reductive elimination from B to give the product 5b, and the 1,5-palladium migration from A to C through B, might exist, and from C, after the bond rotation, the intermediate D would form to afford the isomer 5c. The selectivity of these two processes are

Synthesis of triphenylene-fused phosphole oxides via C–H functionalizations

• Md. Shafiqur Rahman and
• Naohiko Yoshikai

Beilstein J. Org. Chem. 2020, 16, 524–529, doi:10.3762/bjoc.16.48

• via 1,4-cobalt migration. The resulting 7-hydroxybenzo[b]phosphole derivative was used for further π-extension through Suzuki–Miyaura couplings and a Scholl reaction, the latter closing the triphenylene ring. The absorption and emission spectra of the thus-synthesized compounds illustrated their

• the key C–H activation step, i.e., 1,4-cobalt migration in the alkenylcobalt intermediate [29]. The oxidation of the benzo[b]phosphole phosphorous atom and cleavage of the MOM group took place simultaneously, and thus afforded compound 3 in 33% yield on a 5 mmol scale [16]. Compound 3 was then

• phosphole oxides through C–H functionalization and cross-coupling reactions. The phosphole ring was constructed in the early stage of the synthesis by a three-component assembly method featuring a 1,4-cobalt migration as the key step. Unlike other C–H activation/alkyne annulation approaches to benzo[b

KOt-Bu-promoted selective ring-opening N-alkylation of 2-oxazolines to access 2-aminoethyl acetates and N-substituted thiazolidinones

• Qiao Lin,
• Shiling Zhang and
• Bin Li

Beilstein J. Org. Chem. 2020, 16, 492–501, doi:10.3762/bjoc.16.44

• synthetic chemists. However, only a few examples are reported for the synthesis of N-substituted thiazolidinones although the synthetic method of thiazolidinone was described in 1993 [16]. Frost and co-workers explored an efficient ruthenium-catalyzed O-to-S-alkyl migration of N-alkyloxazolidine-2-thiones

Room-temperature Pd/Ag direct arylation enabled by a radical pathway

• Amy L. Mayhugh and
• Christine K. Luscombe

Beilstein J. Org. Chem. 2020, 16, 384–390, doi:10.3762/bjoc.16.36

• majority of experimental evidence supporting this pathway [22][23][24][25][26]. In this case, C2 selectivity is often observed, theoretically from a C3/C2 Pd migration. A third possible mechanism that has had little experimental evidence but cannot be ruled out, is a Heck-type carbopalladation. This

Architecture and synthesis of P,N-heterocyclic phosphine ligands

• Wisdom A. Munzeiwa,
• Bernard Omondi and
• Vincent O. Nyamori

Beilstein J. Org. Chem. 2020, 16, 362–383, doi:10.3762/bjoc.16.35

• lithium halogen elimination, halide migration, and ring-opening reactions [56][57]. Butylphosphines are also formed alongside the main product, and in most cases pure phosphine pyridines are obtained using column chromatography followed by extractions adding to the number of synthesis steps. This method

• -quinolyhydrazine (112) at a molar ratio of 2:1 in the presence of a base gave compound 113 in very good yield. Heating of compound 113 in toluene induced isomerization where the pendant arm is shifted to the quinoline ring via a P–C migration to obtain compound 114. The corresponding P–N and P–P rearrangements

[1,3]/[1,4]-Sulfur atom migration in β-hydroxyalkylphosphine sulfides

• Katarzyna Włodarczyk,
• Piotr Borowski and
• Marek Stankevič

Beilstein J. Org. Chem. 2020, 16, 88–105, doi:10.3762/bjoc.16.11

• Marie Curie-Skłodowska Sq., 20-031 Lublin, Poland 10.3762/bjoc.16.11 Abstract β-Hydroxyalkylphosphine sulfides undergo [1,3]- or [1,4]-sulfur atom phosphorus-to-carbon migration in the presence of Lewis or Brønsted acids. The direction of sulfur atom migration depends on the type of acid used for the

• reaction. In the presence of a Brønsted acid, mainly [1,3]-rearrangement is observed, whereas a Lewis acid catalyzes the [1,4]-sulfur migration. To gain insight into the mechanism of these transformations, the stereochemistry of these rearrangements have been tested, along with the conduction of some

• control experiments and DFT calculations. Keywords: Brønsted and Lewis acids; DFT; mechanistic studies; rearrangement; stereochemistry; sulfur atom migration; Introduction Among all organic reactions, rearrangements are an exciting class of transformations where unusual or even unexpected products can

Regioselectivity of glycosylation reactions of galactose acceptors: an experimental and theoretical study

• Enrique A. Del Vigo,
• Carlos A. Stortz and
• Carla Marino

Beilstein J. Org. Chem. 2019, 15, 2982–2989, doi:10.3762/bjoc.15.294

• was avoided, both in the donors and acceptors, to preclude migration during the glycosylation reactions [14][15]. Synthesis of the glycosyl acceptors The glycosyl acceptors 1α/β and 2α/β were prepared employing protecting group chemistry while trying to simplify the reaction sequences and to optimize

Construction of trisubstituted chromone skeletons carrying electron-withdrawing groups via PhIO-mediated dehydrogenation and its application to the synthesis of frutinone A

• Qiao Li,
• Chen Zhuang,
• Donghua Wang,
• Wei Zhang,
• Rongxuan Jia,
• Fengxia Sun,
• Yilin Zhang and
• Yunfei Du

Beilstein J. Org. Chem. 2019, 15, 2958–2965, doi:10.3762/bjoc.15.291

• ), which is subsequently converted to I–C intermediate D via radical migration [88]. The homogeneous cleavage of the C–I bond in D leads to the stable carbon radical E and an iodine radical. Finally, the reaction between E and the iodine radical produces product 2a, with the concomitant release of water

• and iodobenzene. In pathway b, the O–I intermediate C is converted to a C–I intermediate D via 1,3-migration [89]. Then, intermediate D carries through a five-membered ring transition state F to afford the title product 2a, accompanied by the release of iodobenzene and water. One practical application

An improved, scalable synthesis of Notum inhibitor LP-922056 using 1-chloro-1,2-benziodoxol-3-one as a superior electrophilic chlorinating agent

• Nicky J. Willis,
• Elliott D. Bayle,
• George Papageorgiou,
• David Steadman,
• Benjamin N. Atkinson,
• William Mahy and
• Paul V. Fish

Beilstein J. Org. Chem. 2019, 15, 2790–2797, doi:10.3762/bjoc.15.271

• signalling pathway has been shown to regulate crucial aspects of cell fate determination, organogenesis, cell migration and polarity [1]. Importantly, compromised Wnt signalling has been implicated in the perturbation of synaptic integrity and function in Alzheimer’s disease (AD) [2]. Palmitoleoylation of

Acid-catalyzed rearrangements in arenes: interconversions in the quaterphenyl series

• Sarah L. Skraba-Joiner,
• Carter J. Holt and
• Richard P. Johnson

Beilstein J. Org. Chem. 2019, 15, 2655–2663, doi:10.3762/bjoc.15.258

• explain odd results from Friedel–Crafts reactions [19] and this type of process is sometime referred to as a Baddeley rearrangement. Many examples of alkyl group migration have been described [19]. Phenyl groups migrate easily and degenerate phenyl shifts in biphenyl were confirmed by isotopic labeling

• present work, we have explored rearrangements of quaterphenyls, the next homolog in the paraphenylene series, now with six structural isomers. Scheme 2 summarizes interconnections via 1,2-migration of a terminal phenyl group. As will be shown below, an internal aryl–aryl bond can also be transposed

• through 1,2-biphenyl migration, with a similar network of interconversions. Based on the behavior of terphenyl which favors meta substitution at equilibrium, we initially hypothesized that m,m'-quaterphenyl (14) would likely be the major isomer at equilibrium. Only brief exploration of quaterphenyl

Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis

• Heather J. Lacey,
• Cameron L. M. Gilchrist,
• Andrew Crombie,
• John A. Kalaitzis,
• Daniel Vuong,
• Peter J. Rutledge,
• Peter Turner,
• John I. Pitt,
• Ernest Lacey,
• Yit-Heng Chooi and
• Andrew M. Piggott

Beilstein J. Org. Chem. 2019, 15, 2631–2643, doi:10.3762/bjoc.15.256

• C-9, as hydroxylation at both sites is common to all of the (iso)nanangenines. The 9-hydroxylation also results in migration of the double bond on the decalin to Δ7,8. The two hydroxylations could be catalysed by the FAD-dependent oxidoreductase or one of the cytochrome P450 oxygenases. From this

Current understanding and biotechnological application of the bacterial diterpene synthase CotB2

• Ronja Driller,
• Daniel Garbe,
• Norbert Mehlmer,
• Monika Fuchs,
• Keren Raz,
• Dan Thomas Major,
• Thomas Brück and
• Bernhard Loll

Beilstein J. Org. Chem. 2019, 15, 2355–2368, doi:10.3762/bjoc.15.228

• lead to different migration of the double bound and different hydroxylation pattern (Table 2 and Scheme 1). An exchange to leucine drastically changes the product to cembrane A (7) and 3,7,18-dolabellatriene 12 (Table 2 and Scheme 1) [36]. The cation migrates via a 1,5 hydride shift, as shown by