Enhanced quantum yields by sterically demanding aryl-substituted β-diketonate ancillary ligands

• Rebecca Pittkowski and
• Thomas Strassner

Beilstein J. Org. Chem. 2018, 14, 664–671, doi:10.3762/bjoc.14.54

• 3 by a solid-state structure (Figure 1). Details of the structure determination are given in Supporting Information File 1, Table S1. The absorption spectra (Figure 2) were measured in dichloromethane solution at ambient temperature. The complexes show almost identical absorption behavior with only

• ). Supporting Information The Supporting Information contains NMR-spectra, additional figures, details of the solid state structure determination and computational details. CCDC 1823322 contains the supplementary crystallographic data for this paper. These data can be obtained free of charge via http

• ://www.ccdc.cam.ac.uk/data_request/cif, or by emailing data_request@ccdc.cam.ac.uk, or by contacting The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB21EZ, UK; fax: +44 1223 336033. Supporting Information File 67: NMR spectra, additional figures, details of the solid state structure determination

Sequential Ugi reaction/base-induced ring closing/IAAC protocol toward triazolobenzodiazepine-fused diketopiperazines and hydantoins

• Robby Vroemans,
• Fante Bamba,
• Jonas Winters,
• Joice Thomas,
• Jeroen Jacobs,
• Luc Van Meervelt,
• Jubi John and
• Wim Dehaen

Beilstein J. Org. Chem. 2018, 14, 626–633, doi:10.3762/bjoc.14.49

• . The structure of hydantoin-fused triazolobenzodiazepine was confirmed by a X-ray crystal structure determination of 10a (Figure 3). The three-step synthesis of heterocycle-fused triazolobenzodiazepines involves the well-known Ugi 4-CR as the first step and the IAAC as the last, the mechanisms of which

Regioselective decarboxylative addition of malonic acid and its mono(thio)esters to 4-trifluoromethylpyrimidin-2(1H)-ones

• Sergii V. Melnykov,
• Andrii S. Pataman,
• Yurii V. Dmytriv,
• Svitlana V. Shishkina,
• Mykhailo V. Vovk and
• Volodymyr A. Sukach

Beilstein J. Org. Chem. 2017, 13, 2617–2625, doi:10.3762/bjoc.13.259

• decarboxylative addition of malonic acid mono-4-methoxyphenyl thioester (1b) to 4-trifluoromethylpyrimidin-2(1H)-ones 2a–m. Supporting Information Supporting Information File 481: Experimental procedures, characterization data and X-ray structure determination for compound 11b. Supporting Information File 482

¹⁵N-Labelling and structure determination of adamantylated azolo-azines in solution

• Sergey L. Deev,
• Alexander S. Paramonov,
• Tatyana S. Shestakova,
• Igor A. Khalymbadzha,
• Oleg N. Chupakhin,
• Julia O. Subbotina,
• Oleg S. Eltsov,
• Pavel A. Slepukhin,
• Vladimir L. Rusinov,
• Alexander S. Arseniev and
• Zakhar O. Shenkarev

Beilstein J. Org. Chem. 2017, 13, 2535–2548, doi:10.3762/bjoc.13.250

• of the azolo-1,2,4-triazines. The combined analysis of the JHN and JCN couplings in 15N-labelled compounds provides an efficient method for the structure determination of N-alkylated azolo-azines even in the case of isomer formation. The isomerization of adamantylated tetrazolo[1,5-b][1,2,4]triazin-7

• , respectively. The obtained NMR assignments are collected in Table 1 (1H, 15N) and Table 2 (13C). 13C-15N couplings for the structure determination of N-adamantylated azoloazines. The incorporation of 15N labels into the synthesized compounds led to the appearance of 1H-15N and 13C-15N J-coupling constants (JCN

One-pot syntheses of blue-luminescent 4-aryl-1H-benzo[f]isoindole-1,3(2H)-diones by T3P^® activation of 3-arylpropiolic acids

• Melanie Denißen,
• Alexander Kraus,
• Guido J. Reiss and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2017, 13, 2340–2351, doi:10.3762/bjoc.13.231

• structure determination of compound 4b (Figure 1). The twist angle of the phenyl substituent (ring A) and the 1H-pyrrole-2,5-dionyl moiety is 51.37(7)°, whereas the p-anisyl substituent (ring B) is considerably twisted against the adjacent six-membered ring by 70.95(7)° (Figure 1) [50]. Upon slightly

Comparative profiling of well-defined copper reagents and precursors for the trifluoromethylation of aryl iodides

• Peter T. Kaplan,
• Jessica A. Lloyd,
• Mason T. Chin and
• David A. Vicic

Beilstein J. Org. Chem. 2017, 13, 2297–2303, doi:10.3762/bjoc.13.225

• methods including the reaction of [Cu(O-t-Bu)]4 with Me3SiCF3 and phen (B2, Scheme 1) [12] or by reaction of [(MeO)3BCF3] with CuI and phen (B3, Scheme 1) [8]. The compound [(PPh3)3CuCF3] has been for a long time [13], however, its trifluoromethylating ability and structure determination was not reported

Mechanochemical Knoevenagel condensation investigated in situ

• Sebastian Haferkamp,
• Franziska Fischer,
• Werner Kraus and
• Franziska Emmerling

Beilstein J. Org. Chem. 2017, 13, 2010–2014, doi:10.3762/bjoc.13.197

• grinding process, whereas p-nitrobenzaldehyde remains crystalline until the onset of the product formation. The crystalline product was of sufficient quality for single crystal X-ray structure determination. Results and Discussion Scheme 1 illustrates the investigated Knoevenagel condensation of p

Molecular recognition of N-acetyltryptophan enantiomers by β-cyclodextrin

• Spyros D. Chatziefthimiou,
• Mario Inclán,
• Petros Giastas,
• Athanasios Papakyriakou,
• Konstantina Yannakopoulou and
• Irene M. Mavridis

Beilstein J. Org. Chem. 2017, 13, 1572–1582, doi:10.3762/bjoc.13.157

• -CD (6 mΜ) at 50–60 °C, required a small quantity of ethanol in order to obtain a clear solution, from which crystals of hydrated native β-CD precipitated. This was proved from data collection from several crystals and structure determination based on isomorphous replacement using the coordinates of

• days, produced crystals that could not be refined by isomorphous replacement using the coordinates of hydrated β-CD or other isomorphous crystals, as above. Structure determination. Low temperature X-ray data were collected at synchrotron radiation light sources. A single crystal, covered with a drop

Glycoscience@Synchrotron: Synchrotron radiation applied to structural glycoscience

• Serge Pérez and
• Daniele de Sanctis

Beilstein J. Org. Chem. 2017, 13, 1145–1167, doi:10.3762/bjoc.13.114

• of polysaccharides. Insights into the kinetics of catalytic events observed in the crystalline state are also presented as well as some aspects of structure determination of protein in solution. Keywords: antibodies; carbohydrate binding domains; cellulose; glycosaminoglycans; glycolipids; glycosyl

• dramatic impact on the throughput and on the complexity of the structures determined. However, despite the development in nano-volume liquid handling for high-throughput screens, the crystallization of biological macromolecules still represents an important bottleneck in structure determination. Nanoliter

G-Protein coupled receptors: answers from simulations

• Timothy Clark

Beilstein J. Org. Chem. 2017, 13, 1071–1078, doi:10.3762/bjoc.13.106

• stable conformation. These techniques are discussed in far more detail in reference [6]. One further problem in GPCR structure determination is to obtain crystals in which the GPCR is in the active conformation. The active conformation could be stabilized at low pH with detergents for opsin/rhodopsin [15

Derivatives of the triaminoguanidinium ion, 5. Acylation of triaminoguanidines leading to symmetrical tris(acylamino)guanidines and mesoionic 1,2,4-triazolium-3-aminides

• Jan Szabo,
• Julian Greiner and
• Gerhard Maas

Beilstein J. Org. Chem. 2017, 13, 579–588, doi:10.3762/bjoc.13.57

• , indicate a static, unsymmetrical molecule around 300 K, showing for example separate signals for the three CH2 and Ccarbonyl nuclei. A single-crystal X-ray structure determination was performed for 6b, which gave suitable crystals of 6b·2C2H5OH when crystallized from ethanol. The guanidine structure could

Secondary metabolome and its defensive role in the aeolidoidean Phyllodesmium longicirrum, (Gastropoda, Heterobranchia, Nudibranchia)

• Alexander Bogdanov,
• Cora Hertzer,
• Stefan Kehraus,
• Samuel Nietzer,
• Sven Rohde,
• Peter J. Schupp,
• Heike Wägele and
• Gabriele M. König

Beilstein J. Org. Chem. 2017, 13, 502–519, doi:10.3762/bjoc.13.50

• of [α]D20 +160 [31]. X-ray structure determination performed by Bernstein et al. for the closely related sarcophine (epoxide function at C-7, C-8) revealed also 2S configuration [38]. Sarcophine exhibited a negative Cotton effect at 246 nm. A CD measurement of bisepoxide 12 in acetonitrile did not

Supramolecular frameworks based on [60]fullerene hexakisadducts

• Andreas Kraft,
• Johannes Stangl,
• Ana-Maria Krause,
• Klaus Müller-Buschbaum and
• Florian Beuerle

Beilstein J. Org. Chem. 2017, 13, 1–9, doi:10.3762/bjoc.13.1

• electron microscopy were carried out on activated and non-activated samples of HFF-3. They corroborate the strong anisotropic character of crystalline needles of the X-ray structure determination and do not show changes upon activation (see Figure S13 in Supporting in Information File 1). However, powder X

O-Alkylated heavy atom carbohydrate probes for protein X-ray crystallography: Studies towards the synthesis of methyl 2-O-methyl-L-selenofucopyranoside

• Roman Sommer,
• Dirk Hauck,
• Annabelle Varrot,
• Anne Imberty,
• Markus Künzler and
• Alexander Titz

Beilstein J. Org. Chem. 2016, 12, 2828–2833, doi:10.3762/bjoc.12.282

• are used as reactive glycosyl donors in the syntheses of oligosaccharides. In addition, such heavy atom analogs of natural glycosides are useful tools for structure determination of their lectin receptors using X-ray crystallography. Some lectins, e.g., members of the tectonin family, only bind to

• isolated after Zemplén deprotection in 99% yield and a ratio of α/β = 5:1. Conclusion Unsubstituted seleno glycosides are used for structure determination of complexes with protein receptors. The synthesis of O-methylated analogs has been not reported to date, despite their importance for many lectins. The

• -methylation in position 2 could solve the phase problem for Lb-Tec2 structure determination. Synthesis of 3 through initial introduction of the seleno aglycon and subsequent O-methylation. Reagents and conditions: (a) NaOAc, Ac2O, 140 °C, 3 h; (b) TMSBr, CH2Cl2, 0 °C–rt, 6 h; (c) Me2Se2, NaBH4, MeCN, 90 °C

Synthesis of spiro[isoindole-1,5’-isoxazolidin]-3(2H)-ones as potential inhibitors of the MDM2-p53 interaction

• Salvatore V. Giofrè,
• Santa Cirmi,
• Raffaella Mancuso,
• Francesco Nicolò,
• Giuseppe Lanza,
• Laura Legnani,
• Agata Campisi,
• Maria A. Chiacchio,
• Michele Navarra,
• Bartolo Gabriele and
• Roberto Romeo

Beilstein J. Org. Chem. 2016, 12, 2793–2807, doi:10.3762/bjoc.12.278

• silica gel 0.040–0.063 mm. X-ray crystal structure determination of compound 6a was performed at room temperature on a suitable single crystal, obtained by recrystallization from ether/dichloromethane 2:1, by a Bruker AXS K Apex II CCD diffractometer with Mo Kα radiation (λ = 0.71073 Å). The structure

Computational methods in drug discovery

• Sumudu P. Leelananda and
• Steffen Lindert

Beilstein J. Org. Chem. 2016, 12, 2694–2718, doi:10.3762/bjoc.12.267

• of glaucoma and was developed using structure-based tools (Figure 3) [7][8]. Protein structure determination All structure-based methods rely on the three-dimensional target structure. The most common way to determine a protein structure is by X-ray crystallography and NMR spectroscopy. Recently

• used in structure determination are mostly X-ray crystallography and NMR spectroscopy. As of 2016, the PDB databank contains around 120,000 biological macromolecular structures that have been deposited. It has structural information on over 20,000 bound ligand molecules as well. Swiss-Prot is a

• the target structure that are relevant to the biological function which are not accessible by experimental structure determination, can be obtained. The trajectories can be clustered to obtain a set of representative conformations. The difference here is that instead of using one structure, an

A direct method for the N-tetraalkylation of azamacrocycles

• Andrew J. Counsell,
• Angus T. Jones,
• Matthew H. Todd and
• Peter J. Rutledge

Beilstein J. Org. Chem. 2016, 12, 2457–2461, doi:10.3762/bjoc.12.239

• via recrystallization or by passing the product through a short silica plug (see Table 1 and Supporting Information File 1 for details). Recrystallisation of 3 from a methanolic solution containing KClO4 yielded large, colourless, crystalline prisms. Single crystal X-ray structure determination

Potent triazine-based dehydrocondensing reagents substituted by an amido group

• Munetaka Kunishima,
• Daiki Kato,
• Nobu Kimura,
• Masanori Kitamura,
• Kohei Yamada and
• Kazuhito Hioki

Beilstein J. Org. Chem. 2016, 12, 1897–1903, doi:10.3762/bjoc.12.179

• ). Substrate scope of carboxylic acids 1 and amines 2. Supporting Information General information, synthesis of triazines I–X and structure determination, spectral data of amides 3, attempted synthesis of I from 6, amide-forming reaction with VI in the absence of NMM, and copies of 1H and 13C NMR spectra of

Methylpalladium complexes with pyrimidine-functionalized N-heterocyclic carbene ligands

• Dirk Meyer and
• Thomas Strassner

Beilstein J. Org. Chem. 2016, 12, 1557–1565, doi:10.3762/bjoc.12.150

• analysis. All energies reported are Gibbs free energies at standard conditions (T = 298 K, p = 1 atm) using unscaled frequencies. For visualization GaussView [75] was used. Solid-state structure determination of 9, 12 and 13 Preliminary examination and data collection were carried out on an area detecting

Synthesis of ferrocenyl-substituted 1,3-dithiolanes via [3 + 2]-cycloadditions of ferrocenyl hetaryl thioketones with thiocarbonyl S-methanides

• Grzegorz Mlostoń,
• Róża Hamera-Fałdyga,
• Anthony Linden and
• Heinz Heimgartner

Beilstein J. Org. Chem. 2016, 12, 1421–1427, doi:10.3762/bjoc.12.136

• compounds 5 and 6, details of the crystal structure determination, and the original 1H and 13C NMR spectra for all products. Acknowledgements The authors thank the National Science Center (Cracow, Poland) for generous financial support (Grant Maestro–3 (Dec–2012/06/A/ST5/00219)). Skillful performance of

Molecular weight control in organochromium olefin polymerization catalysis by hemilabile ligand–metal interactions

• Stefan Mark,
• Hubert Wadepohl and
• Markus Enders

Beilstein J. Org. Chem. 2016, 12, 1372–1379, doi:10.3762/bjoc.12.131

• 21% (3) to 81% (6). The ligand L3 as well as the pre-catalysts 4–8 were studied by single crystal X-ray analysis. A selection of molecular structures is presented in Figure 1 and details of the structure determination are presented in Table S1 (see Supporting Information File 1). Due to the rigid and

Synthesis of 2-oxindoles via 'transition-metal-free' intramolecular dehydrogenative coupling (IDC) of sp² C–H and sp³ C–H bonds

• Nivesh Kumar,
• Santanu Ghosh,
• Subhajit Bhunia and
• Alakesh Bisai

Beilstein J. Org. Chem. 2016, 12, 1153–1169, doi:10.3762/bjoc.12.111

• efficient one-pot formation of three consecutive carbon–carbon bonds. X-ray crystal structure determination of (±)-19b proved the outcome of the reaction unambiguously. It was noteworthy to observe Pd-catalyzed highly enantio-, chemo-, and diastereoselective double decarboxylative allylations on dimeric β-N

Towards the total synthesis of keramaphidin B

• Pavol Jakubec,
• Alistair J. M. Farley and
• Darren J. Dixon

Beilstein J. Org. Chem. 2016, 12, 1096–1100, doi:10.3762/bjoc.12.104

• single X-ray crystal diffraction data of 14. Acknowledgements This work was supported by the EPSRC (Leadership Fellowship to D.J.D., Post-Doctoral Fellowship to P.J. and Doctoral Training Grant [EP/M50659X/1] to A.J.M.F.). We also thank Matt Rattley, Jinchao Yang for X-ray structure determination and

Biosynthesis of α-pyrones

• Till F. Schäberle

Beilstein J. Org. Chem. 2016, 12, 571–588, doi:10.3762/bjoc.12.56

• cysteine as a result of substrate incubation prior to crystallization. This was only possible with a very short substrate mimic which renders more similarity to the eastern chain. Using the longer western chain mimic no suitable crystals for structure determination could be produced (neither for CorB, nor

Spiro-fused carbohydrate oxazoline ligands: Synthesis and application as enantio-discrimination agents in asymmetric allylic alkylation

• Jochen Kraft,
• Martin Golkowski and
• Thomas Ziegler

Beilstein J. Org. Chem. 2016, 12, 166–171, doi:10.3762/bjoc.12.18

• . The absolute configuration was assigned by comparison of the optical rotation values with literature data [29] which are based on the chemical correlation method leading to (+)-(S)-2-phenylsuccinate [30] and by X-ray structure determination of (R,E)-3,5-diphenylpent-4-enyl camphor-10-sulfonate [31