Selective synthesis of α-organylthio esters and α-organylthio ketones from β-keto esters and sodium S-organyl sulfurothioates under basic conditions

• Jean C. Kazmierczak,
• Roberta Cargnelutti,
• Thiago Barcellos,
• Claudio C. Silveira and
• Ricardo F. Schumacher

Beilstein J. Org. Chem. 2021, 17, 234–244, doi:10.3762/bjoc.17.24

• results by Bolm et al. [45] and Wang et al. [47], we turned to conduct the reaction under an oxygen atmosphere (Table 1, entry 22). To our delight, the product 3a was obtained selectively in 86% yield. In this case, even GC–MS analysis of the crude sample did not show the presence of 4a. With the best

On the mass spectrometric fragmentations of the bacterial sesterterpenes sestermobaraenes A–C

• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2020, 16, 2807–2819, doi:10.3762/bjoc.16.231

• terpene fragmentations in EIMS in the future by the strategy applied in this work to learn more about the underlying reaction mechanisms. Experimental Preparation of 13C-labelled compounds 1–3 and GC–MS analysis The 25 isotopomers of (13C)-1, (13C)-2, and (13C)-3 were prepared enzymatically with SmTS1

3-Acetoxy-fatty acid isoprenyl esters from androconia of the ithomiine butterfly Ithomia salapia

• Florian Mann,
• Daiane Szczerbowski,
• Lisa de Silva,
• Melanie McClure,
• Marianne Elias and
• Stefan Schulz

Beilstein J. Org. Chem. 2020, 16, 2776–2787, doi:10.3762/bjoc.16.228

• formed from hedycaryol (7) during GC/MS analysis by a Cope-rearrangement [20][21], indicating that 7 might be originally present in the hairpencils. That said, we cannot disprove that this rearrangement could also occur in the androconia. Hedycaryol is an early product of sesquiterpene biosynthesis

Aldehydes as powerful initiators for photochemical transformations

• Maria A. Theodoropoulou,
• Nikolaos F. Nikitas and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2020, 16, 833–857, doi:10.3762/bjoc.16.76

• fluorescence quenching studies, UV–vis spectroscopy experiments, calculation of the quantum yield, a cutoff experiment below 400 nm, GC–MS analysis, and NMR spectroscopic mechanistic experiments. They also concluded that an energy transfer mechanism could not be possible since the solvent employed affected the

Photocatalytic deaminative benzylation and alkylation of tetrahydroisoquinolines with N-alkylpyrydinium salts

• David Schönbauer,
• Carlo Sambiagio,
• Timothy Noël and
• Michael Schnürch

Beilstein J. Org. Chem. 2020, 16, 809–817, doi:10.3762/bjoc.16.74

• after 60 h reaction time (34 and 35). For the cyclohexylation the yield was even lower and conversion stopped after 48 h (26%, 36). When [Ru(bpy)3]Cl2 was used as the catalyst, GC–MS analysis of the crude material showed considerably less conversion in comparison. We found that Katritzky salts deriving

Synthesis of disparlure and monachalure enantiomers from 2,3-butanediacetals

• Adam Drop,
• Hubert Wojtasek and
• Bożena Frąckowiak-Wojtasek

Beilstein J. Org. Chem. 2020, 16, 616–620, doi:10.3762/bjoc.16.57

• of the Wittig reaction. Supporting Information Supporting Information File 239: Experimental procedures of the synthesized compounds. Supporting Information File 240: Copies of 1H NMR and 13C NMR spectra. Acknowledgements We thank Dr Marietta Białoń for performing the GC–MS analysis. Funding A.D

Visible-light-induced addition of carboxymethanide to styrene from monochloroacetic acid

• Kaj M. van Vliet,
• Nicole S. van Leeuwen,
• Albert M. Brouwer and
• Bas de Bruin

Beilstein J. Org. Chem. 2020, 16, 398–408, doi:10.3762/bjoc.16.38

• trapping the radical by replacing styrene with TEMPO (2,2,6,6-tetramethylpiperidin-1-yl)oxyl). However, GC–MS analysis indicated full conversion of TEMPO to the adduct resulting from a radical coupling between a cyanomethanide radical and TEMPO (Scheme 3) for the highly reducing [Ir(ppy)3] (−1.73 V vs SCE

• the desired lactone, according to GC–MS analysis. The 1H NMR and mass spectra of the crude reaction mixture also demonstrated the formation of the ATRA product 4-chloro-4-phenylbutanoic acid. The two products were obtained in a combined yield of 49% (Table 1, entry 4). A further screening of nonpolar

Two antibacterial and PPARα/γ-agonistic unsaturated keto fatty acids from a coral-associated actinomycete of the genus Micrococcus

• Amit Raj Sharma,
• Enjuro Harunari,
• Naoya Oku,
• Nobuyasu Matsuura,
• Agus Trianto and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2020, 16, 297–304, doi:10.3762/bjoc.16.29

• antimicrobial metabolites from an actinomycete [36] and a basidiomycete fungus [37]. In addition, long-chain saturated fatty acids possessing a keto group were detected in the solvent extract of Legionella by GC–MS analysis [38]. Fatty acid components in fresh water-derived Micrococcus species were

Emission and biosynthesis of volatile terpenoids from the plasmodial slime mold Physarum polycephalum

• Xinlu Chen,
• Tobias G. Köllner,
• Wangdan Xiong,
• Guo Wei and
• Feng Chen

Beilstein J. Org. Chem. 2019, 15, 2872–2880, doi:10.3762/bjoc.15.281

• continuous darkness. Headspace collection and GC–MS analysis On the 8th day and 18th day after the transfer of plasmodia to a fresh agar plate, volatiles were collected from the headspace of plasmodia on the agar plate using solid phase microextraction (SPME) (https://www.sigmaaldrich.com). After collection

Harnessing enzyme plasticity for the synthesis of oxygenated sesquiterpenoids

• Melodi Demiray,
• David J. Miller and
• Rudolf K. Allemann

Beilstein J. Org. Chem. 2019, 15, 2184–2190, doi:10.3762/bjoc.15.215

• (21) (Scheme 3B). Due to the racemic nature of the starting diphosphate 11b it is, however, also possible that each enzymatic product arises independently from the individual enantiomers. GC–MS analysis of the organic soluble products generated from an incubation of ADS with 12-methoxy-FDP (12

• ]. Both of these alcohols were methylated with methyl iodide to yield 16 and 17 [32]. To produce the final FDP analogues, THP was removed to generate alcohols 18 and 19, and subsequently diphosphorylated via halogenated intermediates (Scheme 2 and Supporting Information File 1) [33][34][35]. GC–MS

• analysis (Figure 1) of the organic soluble products formed from 8-methoxy FDP (11) through ADS catalysis revealed the formation of a major sesquiterpenoid of molecular mass 234 (85%). No organic soluble products were detected when ADS was omitted from the incubation mixture. This product was identified as

Regioselective Pd-catalyzed direct C1- and C2-arylations of lilolidine for the access to 5,6-dihydropyrrolo[3,2,1-ij]quinoline derivatives

• Hai-Yun Huang,
• Haoran Li,
• Thierry Roisnel,
• Jean-François Soulé and
• Henri Doucet

Beilstein J. Org. Chem. 2019, 15, 2069–2075, doi:10.3762/bjoc.15.204

• lilolidines were detected in very low yields by GC–MS analysis of the crude mixtures. The structure of 20 was confirmed by X-ray diffraction. As α-arylated lilolidines can be easily obtained under the reaction conditions shown in Scheme 2, the synthesis of α,β-diarylated 5,6-dihydropyrrolo[3,2,1-ij]quinolines

Genome mining in Trichoderma viride J1-030: discovery and identification of novel sesquiterpene synthase and its products

• Xiang Sun,
• You-Sheng Cai,
• Yujie Yuan,
• Guangkai Bian,
• Ziling Ye,
• Zixin Deng and
• Tiangang Liu

Beilstein J. Org. Chem. 2019, 15, 2052–2058, doi:10.3762/bjoc.15.202

• dependency of Tvi09626 and its kinetics As reported previously, most terpene synthases are active in the presence of Mg2+ ions [8][37]. To test the Mg2+ dependency of Tvi09626, an in vitro assay was performed. The GC–MS analysis showed that in the presence of Mg2+, compound 1 can be obtained, whereas without

Analysis of sesquiterpene hydrocarbons in grape berry exocarp (Vitis vinifera L.) using in vivo-labeling and comprehensive two-dimensional gas chromatography–mass spectrometry (GC×GC–MS)

• Philipp P. Könen and
• Matthias Wüst

Beilstein J. Org. Chem. 2019, 15, 1945–1961, doi:10.3762/bjoc.15.190

Mechanistic investigations on multiproduct β-himachalene synthase from Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 1008–1019, doi:10.3762/bjoc.15.99

• . Whereas the latter diphosphate did not lead to any terpene product, the incubation with FPP showed a smooth conversion into several sesquiterpenes (Figure 1A) with compound 1 as the major peak after GC–MS analysis. However, also the incubations with GPP (Figure 1B) and GGPP (Figure 1C) led to several less

• formation of compounds 3, 5 and 6, the stereochemical course of these final steps could be followed by stereoselective deuterations. GC–MS analysis of the products obtained from the incubations with HcS, FPPS, DMAPP and (Z)- or (E)-(4-13C,4-2H)IPP showed a specific loss of HZ in all cases (Figure 4

Stereochemical investigations on the biosynthesis of achiral (Z)-γ-bisabolene in Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 789–794, doi:10.3762/bjoc.15.75

• , Supporting Information File 1) and incubated with the common terpene precursors geranyl- (GPP, C10), farnesyl- (FPP, C15), geranylgeranyl- (GGPP, C20) and geranylfarnesyl (GFPP, C25) diphosphate. With hexane extraction and GC–MS analysis, only the incubation with FPP yielded a terpene product (Figure 2) that

Hoveyda–Grubbs catalysts with an N→Ru coordinate bond in a six-membered ring. Synthesis of stable, industrially scalable, highly efficient ruthenium metathesis catalysts and 2-vinylbenzylamine ligands as their precursors

• Kirill B. Polyanskii,
• Kseniia A. Alekseeva,
• Pavel V. Raspertov,
• Pavel A. Kumandin,
• Eugeniya V. Nikitina,
• Atash V. Gurbanov and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2019, 15, 769–779, doi:10.3762/bjoc.15.73

• the composition of the reaction mixtures by the GС–MS technique only (GC–MS was carried out using external calibration for CM and RCM reactions). The validity of quantitative GC–MS analysis was confirmed by additional LC–MS and 1H NMR analysis of selected reaction mixtures. At the beginning of this

Volatiles from the hypoxylaceous fungi Hypoxylon griseobrunneum and Hypoxylon macrocarpum

• Jan Rinkel,
• Alexander Babczyk,
• Tao Wang,
• Marc Stadler and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2018, 14, 2974–2990, doi:10.3762/bjoc.14.277

• [11][12]. Fungal volatiles can be efficiently analysed by trapping, e.g., on charcoal filters with a closed-loop stripping apparatus (CLSA) that was developed by Grob and Zürcher [13], followed by filter extraction and GC–MS analysis of the obtained headspace extracts [14]. The unambiguous compound

• the charcoal filter traps were removed and extracted with CH2Cl2, followed by GC–MS analysis of the obtained extracts. For both strains a large number of compounds from different compound classes including alcohols, ketones, esters, terpenes and pyrazines were identified. Besides the observed minor

• iodine and potassium hydroxide in methanol [39]. The obtained material also showed identical behaviour in the GC–MS analysis to natural 26. Both compounds 25 and 26 are new natural products. Identification of volatiles from Hypoxylon macrocarpum The composition of the headspace extracts from H

N-Acylated amino acid methyl esters from marine Roseobacter group bacteria

• Hilke Bruns,
• Lisa Ziesche,
• Nargis Khakin Taniwal,
• Laura Wolter,
• Thorsten Brinkhoff,
• Jennifer Herrmann,
• Rolf Müller and
• Stefan Schulz

Beilstein J. Org. Chem. 2018, 14, 2964–2973, doi:10.3762/bjoc.14.276

• compounds proved to be either new NAMEs or constitute new classes of acylated amino acid methyl esters, derived from valine (NAVME), glycine (NAGME), or 2-aminobutyric acid (NABME). The identification of these compounds will be discussed based on the outlined approach including GC/MS analysis

• derivatives and analogs of NAMEs, namely N-acyl-2-aminobutyric acid methyl esters (NABME), N-acylglycine methyl esters (NAGME), N-acylvaline methyl esters (NAVME), as well as for the first time a methyl-branched NAME, N-(13-methyltetradecanoyl)alanine methyl ester. These compounds were detected by GC–MS

• analysis, and structural proposals were derived from the mass spectra and by derivatization. Verification of compound structures was performed by synthesis. NABMEs, NAVMEs and NAGMEs are produced in low amounts only, making mass spectrometry the method of choice for their detection. The analysis of both EI

Molecular iodine-catalyzed one-pot multicomponent synthesis of 5-amino-4-(arylselanyl)-1H-pyrazoles

• Camila S. Pires,
• Daniela H. de Oliveira,
• Maria R. B. Pontel,
• Jean C. Kazmierczak,
• Roberta Cargnelutti,
• Diego Alves,
• Raquel G. Jacob and
• Ricardo F. Schumacher

Beilstein J. Org. Chem. 2018, 14, 2789–2798, doi:10.3762/bjoc.14.256

• % yield. When we performed the reaction by using the benzoylacetonitrile derivative 1c substituted with a methoxy group, a lower isolated yield was observed (Table 2, entry 3). This may be associated with the high reactivity of 1c which produced many byproducts as observed by TLC and GC–MS analysis

• -dinitrophenylhydrazine was used, the expected pyrazole 4k was not detected by GC–MS analysis. (Table 2, entry 11). In addition, different diaryl diselenides 3b–e were studied to produce valuable 5-amino-4-(arylselanyl)-1H-pyrazoles 4l–o (Table 2, entries 12–15). In this case, it is possible to see that all diaryl

Direct electrochemical generation of organic carbonates by dehydrogenative coupling

• Tile Gieshoff,
• Vinh Trieu,
• Jan Heijl and
• Siegfried R. Waldvogel

Beilstein J. Org. Chem. 2018, 14, 1578–1582, doi:10.3762/bjoc.14.135

• was most likely and quinoide products were generated due to water traces in the commercially available acetonitrile. In order to investigate the potential functionalization of a side chain, xylene was tested. In contrast to benzene, traces of two compounds were detected by GC–MS analysis with a

Acyl-group specificity of AHL synthases involved in quorum-sensing in Roseobacter group bacteria

• Lisa Ziesche,
• Jan Rinkel,
• Jeroen S. Dickschat and
• Stefan Schulz

Beilstein J. Org. Chem. 2018, 14, 1309–1316, doi:10.3762/bjoc.14.112

• enzyme PgaI2 from P. inhibens, competition experiments were performed. Targeting the optimal chain length of the fully saturated substrates first, a mixture with equal molar concentrations of the substrates 10a–h was offered to the recombinant protein. GC/MS analysis of the resulting extract (Figure 2A

Volatiles from three genome sequenced fungi from the genus Aspergillus

• Jeroen S. Dickschat,
• Ersin Celik and
• Nelson L. Brock

Beilstein J. Org. Chem. 2018, 14, 900–910, doi:10.3762/bjoc.14.77

• germacrene A (21) that is known to undergo a Cope rearrangement to 21a caused by the thermal impact during GC–MS analysis [38]. A 1,3-hydride shift transforms N into O that yields 22 by loss of a proton. Its reprotonation can induce a second cyclisation event via R and S to 24, or with a different

Volatiles from the xylarialean fungus Hypoxylon invadens

• Jeroen S. Dickschat,
• Tao Wang and
• Marc Stadler

Beilstein J. Org. Chem. 2018, 14, 734–746, doi:10.3762/bjoc.14.62

• hydroxy-methylbenzaldehydes were converted into the corresponding methoxy derivatives by methylation with potassium carbonate and methyl iodide. The GC–MS analysis of all the obtained methylation products unequivocally established the identity of 17 and 2-methoxy-4-methylbenzaldehyde by the same retention

• –MS analysis of the obtained extracts [8]. Compound identification is then usually performed by comparison of measured mass spectra to mass spectra in electronic libraries, in addition to comparison of measured to published retention indices. Positive compound identification can be assumed, if the

• and ecologists in volatile secondary metabolites. Volatile natural products can efficiently be captured on charcoal filter traps by using a closed-loop stripping apparatus (CLSA) [6] or on polydimethylsiloxane fibres by application of the solid phase micro-extraction method (SPME) [7], followed by GC

Halogen-containing thiazole orange analogues – new fluorogenic DNA stains

• Aleksey A. Vasilev,
• Meglena I. Kandinska,
• Stanimir S. Stoyanov,
• Stanislava B. Yordanova,
• David Sucunza,
• Juan J. Vaquero,
• Obis D. Castaño,
• Stanislav Baluschev and
• Silvia E. Angelova

Beilstein J. Org. Chem. 2017, 13, 2902–2914, doi:10.3762/bjoc.13.283

• and the fluorescence spectra on a Cary Eclipse fluorescence spectrophotometer (Varian, Australia). The GC–MS analysis was performed on a gas chromatograph HP 6890 GC System Plus coupled to a mass selective detector HP 5973 MSD. The mass selective detector operated in electron impact ionization mode at

Mechanically induced oxidation of alcohols to aldehydes and ketones in ambient air: Revisiting TEMPO-assisted oxidations

• Andrea Porcheddu,
• Evelina Colacino,
• Giancarlo Cravotto,
• Francesco Delogu and
• Lidia De Luca

Beilstein J. Org. Chem. 2017, 13, 2049–2055, doi:10.3762/bjoc.13.202

• selectively that it was complete within just a few minutes. The progress of the reaction was monitored by TLC and GC–MS analysis until the completion of the reaction. The experimental protocol involved two stages, namely the preparation of the catalytic system and the final oxidation reaction. During the

• smoothly reached completion in only 14 minutes (two cycles of 7 minutes each). GC–MS analysis of the crude reaction mixture only showed the presence of the desired aromatic aldehyde, indicating that over-oxidation did not occur (Scheme 2, right side). Prolonged milling did not result in the formation of

• further purified via filtering on a short pad of silica gel to give final aldehyde 2a with a higher degree of purity (>95% as determined by GC–MS analysis). Since most common alcohols are, unfortunately, liquids at room temperature, their mechanical activation requires using a versatile dispersant