Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

• aggregation, attracting interest for the treatment of Alzheimer’s disease [240], was a selective agonist of the farnesoid X receptor FXR (EC50: 3.2 µM) [241], and displayed remarkable neuroprotective effects against oxidative injuries by acting as potent activator of nuclear factor erythroid-derived 2-like 2

Finding the most potent compounds using active learning on molecular pairs

• Zachary Fralish and
• Daniel Reker

Beilstein J. Org. Chem. 2024, 20, 2152–2162, doi:10.3762/bjoc.20.185

• default parameters and aggregation = ‘sum’ using the PyTorch deep learning framework. For the single-molecule Chemprop implementation, number_of_molecules = 1 while for the ActiveDelta implementation number_of_molecules = 2 to allow for processing of multiple inputs as described previously [29]. We

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

Understanding X-ray-induced isomerisation in photoswitchable surfactant assemblies

• Beatrice E. Jones,
• Camille Blayo,
• Jake L. Greenfield,
• Matthew J. Fuchter,
• Nathan Cowieson and
• Rachel C. Evans

Beilstein J. Org. Chem. 2024, 20, 2005–2015, doi:10.3762/bjoc.20.176

• (version 0.94.11) [34]. The first 50 data points were removed due to aggregation effects in some samples. A linear, horizontal background was set to an appropriate value. The data were fitted to either: ellipsoidal cylindrical core-shell, ellipsoidal core-shell or spherical core-shell structures, with a

• (black lines) indicate that a spherical-to-ellipsoidal transition occurs in H2O but not in D2O. Note that the grey circles indicate the native, E-isomer state, and the slope of −3 at low Q values (b) indicates the presence of larger-scale aggregation. The dimensional changes to the ellipsoidal and

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• , was further diluted to prepare various aliquots with a concentration ranging from 1.0 × 10–4–0.1 mM in order to estimate the critical aggregation concentration (CAC) by using static light scattering (SLS). An aqueous solution of DA11 was estimated to have a CAC of <6.0 μM (Figure S5, Supporting

Structure–property relationships in dicyanopyrazinoquinoxalines and their hydrogen-bonding-capable dihydropyrazinoquinoxalinedione derivatives

• Tural N. Akhmedov,
• Ajeet Kumar,
• Daken J. Starkenburg,
• Kyle J. Chesney,
• Khalil A. Abboud,
• Novruz G. Akhmedov,
• Jiangeng Xue and
• Ronald K. Castellano

Beilstein J. Org. Chem. 2024, 20, 1037–1052, doi:10.3762/bjoc.20.92

• illustrated in Figures S37–S41 (Supporting Information File 1). This serves as good evidence that the synthesized compounds exhibit no signs of aggregation in DMSO within the assessed concentration range (i.e., 2.5–45 μM). Electronic structure calculations Gas-phase computational investigations were conducted

Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• aggregations in aqueous solution, as observed by dynamic light scattering (DLS), cryoTEM, and concentration-dependent surface tension measurements [40]. Despite the small size (≈10 nm in hydrodynamic diameter), the aggregation of these fullerene moieties was not ideal for biological applications as

• the approach of bulk water molecules to the fullerene core and hamper water exchange – an important factor for enhancement in MRI. Well-dispersed water-soluble C60 derivatives exhibiting less aggregation are in high demand. To address the challenge mentioned above, we developed highly water-soluble

• ) showed much smaller aggregation (dotted green line, ≈12 nm), providing a transparent solution, while C60–oligo-Arg (5c) remained insoluble over the tested pH value range (4.0–9.2). This was presumably due to the strong cation–π interactions between the cationic Arg moieties and the aromatic C60, which is

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• (ROSs) [28]. Crocins can inhibit the activity of acetylcholinesterase and increase the acetylcholine concentration, thus improving the learning and memory ability of the brain [29]. Moreover, crocins prevent the abnormal aggregation of amyloid β-protein (Aβ), microtubule-associated protein tau, and α

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• ]. Protic additives are widely accepted to “facilitate proton transfer,” but they can also influence the aggregation of charged intermediates. Most mechanistic discussions incorporate protodeauration of alkylgold intermediates and consider a continuum from rate or enantio-determining nucleophilic attack

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• facile recyclability, with the silica layer preventing the Fe3O4 from aggregation. The LPMNPs managed to provide impressive yields, while employing an amount of 2.5 mol % in water, with the help of conventional heating at 50 °C, which facilitated the organocatalytic process that required 1 to 1.5 hours

• -proline on the surface of the magnetic nanoparticle via iminium formation as seen in Scheme 18, allowing the indole to attack the formed double bond and initiate the Michael-type mechanism [107]. In an effort to replace the widespread use of nano-iron oxides, which present issues, such as aggregation, and

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• effect of functional groups on the further chemistry and basicity of the newly synthesized derivatives is also considered. Results and Discussion Amination, dehydrogenation, and supramolecular aggregation Direct amination of quinoquinoline 5 could potentially lead to 2(11)-substituted amines 6 (Figure 1

• -stacking of almost planar diazaarene fragments, leading to pronounced supramolecular aggregation. Although dipyridoacenaphthene does not undergo nucleophilic amination and dehydrogenation under a wide range of conditions, its 5(8)-nitro derivatives can be transformed under mild conditions into the

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• galectins 1 and 3 leads to tumour cell aggregation and promotes cancer metastasis [3][4][5]. The 3’-O-sulfated analogue is known to bind to siglecs 1, 4, and 8 [6] as well as galectin 4 [7][8], but its biological role is not that well investigated. Compound 2 is a new compound but two syntheses of compound

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• chain in dimethyl sulfoxide. Furthermore, the solvent-driven shuttling motion of the macrocycle was observed to exert a discernible effect on the aggregation of the amphiphilic molecular system. In particular, changing the solvent led to the generation of interlaced nanofibers, perforated capsules, and

• solution as well as contradictory propensity to form luminescent nanostructure suspensions in hexane (Figure 5) [137]. It was posited that 65 features hollow vesicles, with vesicle fusion releasing curvature energy, leading to a thermodynamically more stable tubular structure. Such aggregation-induced

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• only SC and water molecules. The DWCNT dispersion was repeatedly subjected to centrifugation at 1,000g for 5 minutes (KOKUSAN H-36) and stirred with a pipette to prevent DWCNT re-aggregation, resulting in the production of the condensed DWCNT dispersion. The dispersions' concentrations were adjusted by

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• surface properties of the aromatic micelles (PA-R)n and their host–guest composites including nanocarbons in water. The ZP of self-assembled nanoparticles evaluates their structural stability in solution against aggregation through electrostatic repulsion [25]. Solutions of the micelles in Milli-Q water

Charge carrier transport in perylene-based and pyrene-based columnar liquid crystals

• Alessandro L. Alves,
• Simone V. Bernardino,
• Carlos H. Stadtlober,
• Edivandro Girotto,
• Giliandro Farias,
• Rodney M. do Nascimento,
• Sergio F. Curcio,
• Thiago Cazati,
• Marta E. R. Dotto,
• Juliana Eccher,
• Leonardo N. Furini,
• Hugo Gallardo,
• Harald Bock and
• Ivan H. Bechtold

Beilstein J. Org. Chem. 2023, 19, 1755–1765, doi:10.3762/bjoc.19.128

• -shifted in the film. These results indicate molecular π-stacking aggregation and excimer formation on the films [2]. The PL in film was obtained as a function of temperature (Figure 4). The observed reduction of the PL intensity on heating is expected for organic semiconductors due to self-quenching

• columnar hexagonal mesophase stable at room temperature, and compound 2 is pyrene-based crystalline with columnar rectangular order preserved at room temperature. Photoluminescence lifetime measurements indicated that molecular aggregation and π-stacking interactions dominate the photophysics of films

Trifluoromethylated hydrazones and acylhydrazones as potent nitrogen-containing fluorinated building blocks

• Zhang Dongxu

Beilstein J. Org. Chem. 2023, 19, 1741–1754, doi:10.3762/bjoc.19.127

• oxidation/cyclization with NXS or Cu(OAc)2. Notably, some of the resultant CF3-substituted 1,6-dihydropyridazines exhibited aggregation-induced emission [102][103] (Scheme 16). The hydrocyanation of acylhydrazones is an important method for the preparation of α-hyrazino acids. Hu et al. reported a Lewis

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• first to establish the suitability of N-acylhydrazones as novel metallophores able to affect protein aggregation and/or oxidation enhanced by physiological metal–protein anomalous interactions related to Alzheimer's (AD) and Parkinson's (PD), as well as to prion diseases [27][28][29][30][31][32][33][34

• affect its pharmacological properties and metallophoric potential against copper(II) when compared to the unsubstituted counterpart. Nevertheless, the bioinspired compound was still able to reduce oxidative stress and affect the aggregation of the amyloid-β peptide, related to pathophysiological events

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• importance of designing molecular structures that can overcome aggregation-related limitations and enhance charge transport properties in all-polymer solar cells (all-PSCs). The team incorporated twisted perylenediimide units into the polymeric backbone of (naphthalenediimide/quinoxaline)thieno[3,2-b

• ]thiophene in different ratios to produce three copolymers, Qx1a, Qx1b and Qx1c (Figure 2). This strategy reduced aggregation and improved the performance and stability of copolymers, with Qx1c achieving a PCE of 4.81% with PTB7-Th donor in an all-PSC device. Moreover, the broadened absorption band indicated

• limitations, as demonstrated by Elavarasan and colleagues. Their team synthesized TQT-C60 and anchored it to fullerene molecules (Figure 3) to prevent aggregation during thermal aging. The researchers found that TQT-C60 demonstrated enhanced morphological stability and thermal resistance compared to the

A deep-red fluorophore based on naphthothiadiazole as emitter with hybridized local and charge transfer and ambipolar transporting properties for electroluminescent devices

• Suangsiri Arunlimsawat,
• Patteera Funchien,
• Pongsakorn Chasing,
• Atthapon Saenubol,
• Taweesak Sudyoadsuk and
• Vinich Promarak

Beilstein J. Org. Chem. 2023, 19, 1664–1676, doi:10.3762/bjoc.19.122

• aggregation-induced emission (AIE) luminogen. The experimental (solvatochromic and emission in THF/water mixtures studies) and theoretical investigations prove that TPECNz retains cooperative hybridized local and charge transfer (HLCT) and weak AIE features. Thanks to its D–A–D-type structure with a proper

• , respectively, providing well-balanced ambipolar characteristics. On the other hand, the attached 4-(1,2,2-triphenylvinyl)phenyl (TPE) moiety would induce aggregation-induced emission (AIE) as feature into the molecule. It was suspected that AIE would restrain the aggregation-caused quench (ACQ) and the energy

• , the molecule will demonstrate different degrees of aggregation since it can dissolve really well in THF but is insoluble in water, resulting in colloidal nanoaggregates being formed in solutions with high water contents. As shown in Figure 4a and 4b, in pure THF, TPECNz deep-red emission color with

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• group impacts the shape of the UV–visible film spectra, leading to ill-defined 0 → 0, 0 → 1, and 0 → 2 transitions, while those without a nitrile group exhibit well-defined 0 → 0 and 0 → 1 transitions. Complex aggregation of these compounds is evident, and no clear indication of H- or J-aggregation can

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• ) produced successively the lyso derivative 10.8 and the acetylated compound 10.9. The suppression of the ether function in position sn-1 of PAF or its replacement by a thioether function were also reported in 1984 with the aim to identify new compounds that could modulate platelet aggregation or featuring

• deoxy-PAF 11.8. The biological evaluations of deoxy-PAF 11.8 have shown that it was less efficient than PAF to reduce blood pressure and to stimulate platelet aggregation [91]. The synthesis of the racemic sn-1-thio-PAF 12.8 was reported by Maffrand et al. in 1984 (Figure 12) [93]. The sequence starts

• these PAF-analogues (18.2b and 18.2d) were more efficient than PAF for platelet aggregation and for their ability to reduce hypertension. Heymans et al. reported in 1985 a series of PAF-analogues featuring a polar head group in which the phosphate function was replaced by an ether function (Figure 19

Exploring the role of halogen bonding in iodonium ylides: insights into unexpected reactivity and reaction control

• Carlee A. Montgomery and
• Graham K. Murphy

Beilstein J. Org. Chem. 2023, 19, 1171–1190, doi:10.3762/bjoc.19.86

• increased stability. As the Lewis basic ortho-methoxy was engaged with the ylide’s stronger σ-hole, it likely resulted in weaker intermolecular interactions that diminished its aggregation ability and increased its solubility. However, the full impact of this ortho-methoxy group was unclear, as it could

• on the arene, these engaged with the ylide’s stronger σ-hole to block this site and diminish the ylide’s aggregation potential. However, intramolecular σ-hole blocking by halogen bond acceptors appears to be reversible, as these σ-holes do participate in reactions with extraneous Lewis basic

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

Linker, loading, and reaction scale influence automated glycan assembly

• Marlene C. S. Dal Colle,
• Manuel G. Ricardo,
• Nives Hribernik,
• José Danglad-Flores,
• Peter H. Seeberger and
• Martina Delbianco

Beilstein J. Org. Chem. 2023, 19, 1015–1020, doi:10.3762/bjoc.19.77

• low loading (0.1–0.2 mmol/g) being beneficial to avoid aggregation of long peptide sequences, and high loadings (0.4–0.5 mmol/g) advantageous for more efficient syntheses [21]. Herein, we systematically investigate how variations in linker type, resin loading, and reaction scale influence the

• ]. We wondered whether different glycan sequences were more sensitive to the linker structure. Less reactive donors might highlight differences in the linker nucleophilicity [25]. The aggregation of the growing glycan chains is conceivable to be connected to linker flexibility [18]. The efficiency of UV

• cleavage is probably influenced by glycan structure, solubility, and aggregation tendency [26]. Lastly, purification of the protected glycan upon cleavage could be affected by the presence or absence of a linker. L1 or L2 were conjugated to Merrifield resins with initial loadings of 0.5 mmol/g and 1.0 mmol