Further elaboration of the stereodivergent approach to chaetominine-type alkaloids: synthesis of the reported structures of aspera chaetominines A and B and revised structure of aspera chaetominine B

• Jin-Fang Lü,
• Jiang-Feng Wu,
• Jian-Liang Ye and
• Pei-Qiang Huang

Beilstein J. Org. Chem. 2025, 21, 2072–2081, doi:10.3762/bjoc.21.162

• anticipated that if we run the work-up procedure under more basic conditions, one would be able to obtain solely double cyclization products. Indeed, alternation of the work-up protocol by employing an aged solution of K2CO3/MeOH (stood at rt overnight, pH 11) to quench the DMDO oxidation reaction of

Discovery of cytotoxic indolo[1,2-c]quinazoline derivatives through scaffold-based design

• Daniil V. Khabarov,
• Valeria A. Litvinova,
• Lyubov G. Dezhenkova,
• Dmitry N. Kaluzhny,
• Alexander S. Tikhomirov and
• Andrey E. Shchekotikhin

Beilstein J. Org. Chem. 2025, 21, 2062–2071, doi:10.3762/bjoc.21.161

• titration with calf thymus DNA (0–290 μM base pairs) in 100 mM KCl, 20 mM Tris-HCl, pH 8.0. Synthesis of 12-modified indolo[1,2-c]quinazoline derivatives. Synthesis of indolo[1,2-c]quinazoline-12-carboxamides 7a–c. Mannich aminomethylation of indolo[1,2-c]quinazolines 1 and 8. Synthesis of 5-(3-aminopropyl

Aryl iodane-induced cascade arylation–1,2-silyl shift–heterocyclization of propargylsilanes under copper catalysis

• Rasma Kroņkalne,
• Rūdolfs Beļaunieks,
• Armands Sebris,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2025, 21, 1984–1994, doi:10.3762/bjoc.21.154

• on intermediate allyl cation (Scheme 1C). The obtained tetrahydrofuran and pyrrolidine derivatives with highly substituted vinyl side-chains are regarded as privileged structures in medical chemistry [23][24]. Moreover, the resulting styryl functionality (Ph-C=C-) is often found in drug molecules as

• NMR spectra. Interestingly, the internal alkyne 7c (R = Ph, Si = TIPS) was completely unreactive under both standard arylation conditions (70 °C in EtOAc) and higher reaction temperatures (110 °C in BuOAc). In these cases, the starting material was recovered with no signs of degradation. This

• standard column chromatography techniques (30–50% DCM). Iodanes, containing electron-rich aryl groups (p-Tol, m-MeO-C6H4, Ph) or halogens (Br, F) gave the highest tetrahydrofuran 8 yields (70–83%). In contrast, electron-withdrawing group-containing iodanes, especially those holding nucleophilic heteroatoms

Synthesis, biological and electrochemical evaluation of glycidyl esters of phosphorus acids as potential anticancer drugs

• Almaz A. Zagidullin,
• Emil R. Bulatov,
• Mikhail N. Khrizanforov,
• Damir R. Davletshin,
• Elvina M. Gilyazova,
• Ivan A. Strelkov and
• Vasily A. Miluykov

Beilstein J. Org. Chem. 2025, 21, 1909–1916, doi:10.3762/bjoc.21.148

• , tryptophan residues), as well as the overall structure of the protein. The peak intensity and shape can vary depending on pH, ionic strength, and protein conformation. However, under our conditions, the HSA oxidation was consistent, well‐defined, and served as a clear baseline reference. Subsequent to

• carbon, scan rate: 0.1 V/s, pH 6.7. Chemical structure of alkylating fragment of 1–3 and the associated chemical pathway of its covalent attachment to HSA. Synthesis of glycidyl esters of phosphorus acids 1–3. IC50 values (μM ± SD) for glycidyl esters of phosphorus acids 1–3 in human skin fibroblasts

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

• Margherita Gazzotti,
• Fabrizio Medici,
• Valerio Chiroli,
• Laura Raimondi,
• Sergio Rossi and
• Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

• total charge of 2.2 F/mol was delivered. The reaction mixture was poured into a beaker with 10 mL of distilled water, and a saturated solution of NaHCO3 was added to adjust the pH to ≈7. 10 mL of ethyl acetate were then added, and the two phases were separated. The aqueous phase was then extracted with

• experiments were conducted until a total charge of 4.15 F/mol was delivered. The reaction mixture was then poured into a beaker with distilled water, and a saturated solution of NaHCO3 was added to adjust the pH to ≈7. Ethyl acetate was added, and the two phases were separated. The aqueous phase was then

Photoswitches beyond azobenzene: a beginner’s guide

• Michela Marcon,
• Christoph Haag and
• Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

• photoswitches (Figure 6) [5]. N-Methylation of indole 2b increases the lifetime due to a preference for the inversion with respect to the rotation mechanism. Interestingly, the isomerisation of the non-methylated 2a is also strongly influenced by protic solvents, by the pH of the solution, and by the

• concentration of the photoswitch in solution: when MeOH or water are present, the lifetimes drop significantly, and particularly at pH 4, as consequence of more favourable intermolecular proton transfer. Calculations show that water molecules bridging between two Z-isomers favour the formation of hydrazone and

• stabilises one of the two isomers via the formation of a hydrogen bond (Scheme 30) [95]. This peculiarity makes this photoswitch class extremely susceptible to solvent polarity [96][97][98], pH [98][99][100][101], and metal coordination [102][103][104]. With such variability, predicting which is the most

Research progress on calixarene/pillararene-based controlled drug release systems

• Liu-Huan Yi,
• Jian Qin,
• Si-Ran Lu,
• Liu-Pan Yang,
• Li-Li Wang and
• Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

• release systems based on host–guest selective recognition, self-assembly, and nano-valves by the use of of calixarenes and pillararenes from five perspectives: pH, light, enzyme, hypoxia, and multi-stimuli combination responses. Furthermore, the article projects the future clinical application prospects

• in pH, light, and enzyme activity, the binding affinity between the guest and host molecules can be altered, thereby achieving controlled drug release and targeted delivery. (2) Drugs are loaded into self-assembled host–guest systems [29][30][31][32]. The chemical structure or properties of the host

• or guest molecules are altered upon exposure to specific stimuli, such as light, pH changes, or enzymes. This modification induces the disassembly of the host–guest complex, thereby releasing the encapsulated drugs. Fundamentally, this mechanism relies on controlling the assembly and disassembly

Convenient alternative synthesis of the Malassezia-derived virulence factor malassezione and related compounds

• Karu Ramesh and
• Stephen L. Bearne

Beilstein J. Org. Chem. 2025, 21, 1730–1736, doi:10.3762/bjoc.21.135

• nitrogen source followed by thin-layer chromatography and reversed-phase (RP)-HPLC to isolate and purify the compound from a complex mixture of indole alkaloids [11], (ii) prepared by aerobic incubation of indole-3-pyruvic acid at pH 7.4, 37 °C for 24 h followed by isolation and purification using RP-HPLC

Influence of the cation in hypophosphite-mediated catalyst-free reductive amination

• Natalia Lebedeva,
• Fedor Kliuev,
• Olesya Zvereva,
• Klim Biriukov,
• Evgeniya Podyacheva,
• Maria Godovikova,
• Oleg I. Afanasyev and
• Denis Chusov

Beilstein J. Org. Chem. 2025, 21, 1661–1670, doi:10.3762/bjoc.21.130

• synthesis of imines and enamines [36][37]. In our reducing system H3PO2 could act as an effective reductant due to its high solubility in neat conditions (Table 1, line 1) (in form of morpholinium hypophosphite). Nonetheless reductive potential of hypophosphite is pH-dependent (−1.65 V at pH 14 vs −0.5 V at

• pH 0) [19], and usage of an additional amount of base leads to stronger reductive properties. Moreover, the role of the cation could be critical for the thermal stability against disproportionation or aerobic oxidation of hypophosphite [38]; salts with larger cations are also more soluble in organic

• system is more efficient than the earlier described usage of the pure NaH2PO2: higher solubility of the potassium, rubidium and cesium salts compared to the sodium and lithium and a proper pH of the reaction medium. Acidic catalysis strongly accelerates the rate of hemiaminal and iminium ion formation

Thermodynamic equilibrium between locally excited and charge transfer states in perylene–phenothiazine dyads

• Issei Fukunaga,
• Shunsuke Kobashi,
• Yuki Nagai,
• Hiroki Horita,
• Hiromitsu Maeda and
• Yoichi Kobayashi

Beilstein J. Org. Chem. 2025, 21, 1577–1586, doi:10.3762/bjoc.21.121

• the LE state of the PTZ moiety. In contrast, Pe-Ph–PTZ(TPA)2, in which the donor–acceptor distance is increased by a phenyl spacer, does not show clear equilibrium behavior. These results underscore the crucial role of excited-state structural relaxation in tuning photoinduced charge separation, and

• series of novel Pe–PTZ derivatives by incorporating electron-donating triphenylamine (TPA) units and phenyl spacers to systematically modulate the donor strength and the spatial distance between the donor and acceptor. Four compounds – Pe–PTZ, Pe–PTZ(TPA), Pe–PTZ(TPA)2, and Pe–Ph–PTZ(TPA)2 – were

• coupling in the ground state, consistent with the π-orthogonal molecular design. The introduction of electron-donating TPA groups raises the HOMO energy levels, while the LUMO levels remain relatively unaffected, thereby reducing the HOMO–LUMO gaps. The presence of phenyl spacers in Pe–Ph–PTZ(TPA)2 lowers

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

• Ryota Kimura,
• Satoshi Ichikawa and
• Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

• 060-0812, Japan 10.3762/bjoc.21.120 Abstract pH-Responsive molecular switches and motors are a class of organic molecules whose three-dimensional structure can be changed by acid–base stimuli. To date, pH-responsive molecular switches have been developed using various functional groups, but further

• advances require expanding the range of pH-responsive systems and discovering new molecular architectures. Here, we investigate the pH-responsive behavior of ortho-disubstituted benzamidine, which generates atropisomers and E/Z isomers. The amidine moiety allows modulation of the C–N and C–N/C–C rotational

• barriers by protonation, providing a novel approach to control the kinetics of isomerization via pH adjustment. The results showed that protonation of the amidine moiety significantly suppresses both C–N bond rotation and C–N/C–C concerted rotation, demonstrating the potential of ortho-disubstituted

Azobenzene protonation as a tool for temperature sensing

• Antti Siiskonen,
• Sami Vesamäki and
• Arri Priimagi

Beilstein J. Org. Chem. 2025, 21, 1528–1534, doi:10.3762/bjoc.21.115

• . Keywords: azobenzene; protonation; sensing; spectral changes; temperature; Introduction Molecular switches are molecules that can reversibly shift between distinct (meta)stable states in response to external stimuli such as light, pH changes, or electric fields [1]. Over the past decades, they have

• emerged as staple building blocks in smart materials, from light-responsive norbornadienes in molecular solar thermal energy storage [2] to pH-sensitive spiropyrans in cell imaging [3], and redox-active viologens in memory junctions [4]. Among the different molecular switches azobenzenes stand out due to

• spectral changes caused by azobenzene protonation is a well-established concept, with methyl orange-based pH indicators dating back to the late 1800s [22]. Early studies primarily focused on characterizing these spectral changes, determining pKa values, and elucidating the protonation mechanism of

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• contained thioaminals 9, which underwent a slow isomerization in CDCl3 solution. Notably, in the case of products 9k and 10k, bearing a Ph group at N(1), after a successful chromatographic separation, the less stable 9k underwent isomerization in CDCl3 solution (at rt) and no registration of NMR spectra of

Advances in nitrogen-containing helicenes: synthesis, chiroptical properties, and optoelectronic applications

• Meng Qiu,
• Jing Du,
• Nai-Te Yao,
• Xin-Yue Wang and
• Han-Yuan Gong

Beilstein J. Org. Chem. 2025, 21, 1422–1453, doi:10.3762/bjoc.21.106

• 6 exhibiting enhanced chiroptical performance and protonation-induced CPL amplification [19]. Meanwhile, Audisio’s team developed heterohelicenes via regioselective [3 + 2]-cycloadditions, with compound 7 displaying pH-responsive CPL sign inversion (|glum| = +1.1 × 10−3 at 430 nm, −1.2 × 10−3 at 585

• reported azabora[6]helicenes 45a and 45b [60]. However, their enantiomers could not be isolated due to low racemization barriers. The F- and Ph-coordinated derivatives displayed moderate PLQYs in solution (0.26 and 0.18, respectively), which dropped markedly in the solid state (0.02 and 0.04) owing to

• thia-bridged triarylamine[4]helicene-functionalized polynorbornenes 63a–c via ring-opening metathesis polymerization (ROMP), introducing helicene chirality into polymer backbones with tunable electrochromic behavior [78]. These polymers exhibit reversible pH-responsive color changes. For instance, 63a

Tautomerism and switching in 7-hydroxy-8-(azophenyl)quinoline and similar compounds

• Lidia Zaharieva,
• Vera Deneva,
• Fadhil S. Kamounah,
• Nikolay Vassilev,
• Ivan Angelov,
• Michael Pittelkow and
• Liudmil Antonov

Beilstein J. Org. Chem. 2025, 21, 1404–1421, doi:10.3762/bjoc.21.105

• donors in the phenyl ring, while N–NH is a donor, favored by acceptors in Ph [3][7][89]. Following this model, a suitable substitution in the Ph ring of 1 can stabilize or destabilized KE and KK in respect to E and K. This opens an additional channel for fulfilling the requirements for a clean switching

• for clean switching. Obviously, a cooperative effect between substitution in the Ph ring and the 7-OH quinoline part is needed. In Scheme 3 and Table 3 the most suitable examples for cooperative substitution are shown. It seems that the substitution with strong donor substituents in the phenyl ring

• characteristics of the ground-state tautomers of the studied compounds as well as relative energies of the transition states between them in toluene and in acetonitrile (in parentheses). Relative stability of the tautomers of compound 1 in toluene as a function of the substituents in Ph ring. Relative stability

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• glycerol, 2.5 g of corn steep solids, 5 g of peptone, 10 g of soluble starch, 2 g of yeast extract, 3 g of CaCO3 and 1 g of NaCl) medium at pH 7.0 in 250 mL Erlenmeyer flasks and cultured on an open shaker (160 rpm) at room temperature for 10 days. The corresponding blank media were also maintained under

Synthesis of β-ketophosphonates through aerobic copper(II)-mediated phosphorylation of enol acetates

• Alexander S. Budnikov,
• Igor B. Krylov,
• Fedor K. Monin,
• Valentina M. Merkulova,
• Alexey I. Ilovaisky,
• Liu Yan,
• Bing Yu and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2025, 21, 1192–1200, doi:10.3762/bjoc.21.96

• .21.96 Abstract Aerobic copper(II)-mediated phosphorylation of enol acetates with H-phosphonates leading to the formation of β-ketophosphonates was discovered. The proposed method is applicable to a wide range of H-phosphonates or phosphine oxides as PH-reagents and enol acetates. Unlike previous reports

• produced by the oxidation of PH-reagents by copper(II)-containing species. Employing anhydrous CuSO4 instead of the pentahydrate led to a dramatic phosphorylation yield drop from 70 to <5%. It seems that the ligand environment of copper is very important for the effective reaction: other Cu(II) and Cu(I

• oxides as PH-reagents. The developed protocol utilizes a simple copper catalyst under mild reaction conditions and synthetically available enol acetates (compared to traditionally employed alkenes, alkynes, cinnamic, and α,β-alkynyl carboxylic acids). The present approach showed good functional group

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• Novozyme 435 in a pH 7 buffer to hydrolyze the acetate group. The resulting alcohol, (R)-118, was isolated in 73% yield with 96% ee. This alcohol was then reacted with o-diphenylphosphanylbenzoate (o-DPPB) in the presence of DCC, affording (R)-120 in 83% yield (>99% ee, E/Z >99:1) after recrystallization

Gold extraction at the molecular level using α- and β-cyclodextrins

• Susana Santos Braga

Beilstein J. Org. Chem. 2025, 21, 1116–1125, doi:10.3762/bjoc.21.89

• networks to optimize the chemical parameters of the extraction. An optimal value of gold removal, lying between 98 and 98.9%, was found to occur with a contact time of 40 minutes, a concentration of α-CD of 11.61 g/L and KOH was added in enough quantity to raise the solution pH to 5 [47][48]. Complexes of

• leachates (pH < 2) [52]. To better understand the chemistry behind this precipitation method, it is worth mentioning that the AuCl4− anion is a complex ion, formed by gold(III) and chloride ions, and that the presence of the extra choride ion to render it an anionic complex instead of a salt is a factor

A versatile route towards 6-arylpipecolic acids

• Erich Gebel,
• Cornelia Göcke,
• Carolin Gruner and
• Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 1104–1115, doi:10.3762/bjoc.21.88

• . The formyl group can be cleaved under acidic conditions to yield the esters (2R,6S)-11. Treatment of the solution with LiOH at pH 9–10 and at 40 °C leads to saponification of the methyl ester (Scheme 5c and Scheme 6). Conclusion In conclusion, we present a straightforward and efficient method for the

Salen–scandium(III) complex-catalyzed asymmetric (3 + 2) annulation of aziridines and aldehydes

• Linqiang Wang and
• Jiaxi Xu

Beilstein J. Org. Chem. 2025, 21, 1087–1094, doi:10.3762/bjoc.21.86

• was refluxed over sodium with benzophenone as an indicator and freshly distilled prior to use. Column chromatography was performed on silica gel (normal phase, 200–300 mesh) from Anhui Liangchen Silicon Material Co., Ltd. or basic aluminum oxide (pH 9–10) from Shanghai Titan Technology Co., Ltd

Pd-Catalyzed asymmetric allylic amination with isatin using a P,olefin-type chiral ligand with C–N bond axial chirality

• Natsume Akimoto,
• Kaho Takaya,
• Yoshio Kasashima,
• Kohei Watanabe,
• Yasushi Yoshida and
• Takashi Mino

Beilstein J. Org. Chem. 2025, 21, 1018–1023, doi:10.3762/bjoc.21.83

• further conversion of (S)-13a into the malononitrile derivative (S)-16 without loss of optical purity. Compound 1 and 2. Chiral ligands 3–7. Preparation and optical resolution of 7. Pd-catalyzed asymmetric allylic amination of acetate 12 (Ar = Ph) or 15 (Ar = p-ClC6H4) with isatin derivatives 11 using (aR

On the photoluminescence in triarylmethyl-centered mono-, di-, and multiradicals

• Daniel Straub,
• Markus Gross,
• Mona E. Arnold,
• Julia Zolg and
• Alexander J. C. Kuehne

Beilstein J. Org. Chem. 2025, 21, 964–998, doi:10.3762/bjoc.21.80

Unraveling cooperative interactions between complexed ions in dual-host strategy for cesium salt separation

• Zhihua Liu,
• Ya-Zhi Chen,
• Ji Wang,
• Qingling Nie,
• Wei Zhao and
• Biao Wu

Beilstein J. Org. Chem. 2025, 21, 845–853, doi:10.3762/bjoc.21.68

• that a tripodal hexaurea receptor L (Figure 1b) could selectively and reversibly extract sulfate and phosphate anions from water into organic phase (under pH control) [30][31][32][33]. Single crystal structures of the receptor–K2SO4 complex in the presence of 18-crown-6 clearly displayed ion-dipole

Substituent effects in N-acetylated phenylazopyrazole photoswitches

• Radek Tovtik,
• Dennis Marzin,
• Pia Weigel,
• Stefano Crespi and
• Nadja A. Simeth

Beilstein J. Org. Chem. 2025, 21, 830–838, doi:10.3762/bjoc.21.66

• further issue, we observed some instability at acidic pH during analysis. Thus, we tested the stability of NAc-PAP-H (1 mM, MeOH, ambient conditions, 2 h) at pH 2, 12, and in the presence of DBU (10−2 M) and found that the acetyl group was lost (cf. Supporting Information File 1, section 2.4). UV–vis