Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• , the structural model allowed unambiguous assignment of the solid state molecular structure and absolute configuration. As shown in Figure 2, the desired axial anomeric phosphate was clearly visible alongside an interesting gg rotameric form for the C6–chloro side chain substituent (pyranose side chain

Synthesis of tryptophan-dehydrobutyrine diketopiperazine and biological activity of hangtaimycin and its co-metabolites

• Houchao Xu,
• Anne Wochele,
• Minghe Luo,
• Gregor Schnakenburg,
• Yuhui Sun,
• Heike Brötz-Oesterhelt and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 1159–1165, doi:10.3762/bjoc.18.120

• placed the N-methyl group at the other nitrogen of the dioxopiperazine moiety [12]. Moreover, the confusing situation about the absolute configuration and optical rotation are resolved through this work, clearly showing S-configuration for 4 that exhibits a negative optical rotation ([α]D25 = –15.5, c

• later revised as that of (Z)-4. The same compound is also observed in S. olivaceus [10] and was reported to function as a competitive inhibitor of glutathione S-transferase [11], which may be a result of a thiol addition of glutathione to the Michael acceptor in 4. While the relative and absolute

• configuration of hangtaimycin have not yet firmly been established, 2 is known to be S-configured and is derived from an ʟ-alanine unit [2]. TDD (4) was recently suggested to be R-configured, containing a ᴅ-tryptophan unit, based on a comparison of the optical rotation of the isolated compound ([α]D20 = −12.67

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• ’’-coupled dimer (Table S5, Supporting Information File 1). For the dimer 3, three hydroxy and fifteen sp2 protons indicated a C–O bond linkage. An analysis of 1H,1H-COSY and HMBC spectra suggested it to be a 3’–O–7’’-coupled dimer (Table S6, Supporting Information File 1). The absolute configuration of 1

Isolation and biosynthesis of daturamycins from Streptomyces sp. KIB-H1544

• Yin Chen,
• Jinqiu Ren,
• Ruimin Yang,
• Jie Li,
• Sheng-Xiong Huang and
• Yijun Yan

Beilstein J. Org. Chem. 2022, 18, 1009–1016, doi:10.3762/bjoc.18.101

• . Furthermore, the absolute configuration of C-4 and C-5 in compound 1 was also confirmed as 4R and 5S by X-ray crystallography (Figure 2). (±)-Daturamycin B (2) was isolated as a white powder, and its molecular formula was determined as C17H14O3 by HRMS–ESI data (m/z 289.0833 [M + Na]+, calcd for C19H16O5Na

• suggested that the relative configurations of C-4 and C-5 were trans. Therefore, the structure of compound 2 has been determined, as shown in Figure 1. However, the absolute configuration of compound 2 remained unsolved. Daturamycin C (3) was obtained as a brown powder, and the 1H and 13C NMR spectra

Anti-inflammatory aromadendrane- and cadinane-type sesquiterpenoids from the South China Sea sponge Acanthella cavernosa

• Shou-Mao Shen,
• Qing Yang,
• Yi Zang,
• Jia Li,
• Xueting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 916–925, doi:10.3762/bjoc.18.91

• enantiomers [(+)-4/(−)-4 and (+)-5/(−)-5], respectively, by using chiral-phase HPLC. The structures of new compounds were elucidated by extensive spectroscopic analysis and comparison with the reported data. In addition, the absolute configuration of optically pure (+)-1 and 2 were determined by time

• product of squamulosone [aromadendr-1(10)-en-9-one] by the fungus Curvularia lunata ATCC 12017 [19], indicating (+)-1 and (−)-1 were enantiomeric each other. To secure the absolute configuration of optically pure (+)-1, a TDDFT-ECD calculation, which has proven to be a reliable tool for the absolute

• /6-311G** level of theory (see Supporting Information File 1 for details). A detailed comparison of the Boltzmann-averaged ECD spectrum with that of the experimental one (Figure 3) confirmed the absolute configuration of (+)-1 as 2S, 4S, 5R, 6S, 7S. Consequently, the structure of (+)-1 was assigned

The stereochemical course of 2-methylisoborneol biosynthesis

• Binbin Gu,
• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 818–824, doi:10.3762/bjoc.18.82

• ]. Recent research on its chemical ecology demonstrated that arthropodes are attracted by compound 1 which helps in the dispersion of Streptomyces spores [20]. The absolute configuration of (–)-1 has been established through a synthesis from (+)-camphor [21]. The biosynthesis of compound 1 was initially

Terpenoids from Glechoma hederacea var. longituba and their biological activities

• Dong Hyun Kim,
• Song Lim Ham,
• Zahra Khan,
• Sun Yeou Kim,
• Sang Un Choi,
• Chung Sub Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2022, 18, 555–566, doi:10.3762/bjoc.18.58

• the same orientation as 8α-DIG. Also, the NOESY spectrum of 1 showed cross peaks between H3-14, H-3a/H-2a; H-3a, H-6a/H3-15 indicating their α-orientation, whereas the NOESY cross peaks of H-1, H-1'/H-9b; H-3b, H-6b/H-5 suggested their β-orientation (Figure 2A). The absolute configuration of 1 was

• and 2b (Figure 3B). The DP4+ statistical analysis supported the structural equivalence of 2 to 2a (α-configuration at C-8) with 93% probability (Figure 3B). The absolute configuration of 2 was implied based on a comparison of the calculated ECD spectra of 2a and experimental ECD spectra of 2 (Figure

• defined as β-configuration from the coupling constant of 7.8 Hz [11]. The relative configuration of 3 was established using the NOESY spectrum (Figure 4A). The NOE correlations of H3-14, H-3b/H-2b; H-6/H-3b/H3-15 suggested that H-6, H3-14, and H3-15 were positioned in the same orientation. The absolute

Sesquiterpenes from the soil-derived fungus Trichoderma citrinoviride PSU-SPSF346

• Wiriya Yaosanit,
• Vatcharin Rukachaisirikul,
• Souwalak Phongpaichit,
• Sita Preedanon and
• Jariya Sakayaroj

Beilstein J. Org. Chem. 2022, 18, 479–485, doi:10.3762/bjoc.18.50

• were identified by analysis of their spectroscopic data. The relative configuration was assigned based on NOEDIFF data. The absolute configuration of compound 1 was established according to specific rotations and ECD data while that of compound 2 was proposed based on biosynthetic considerations

• ] (Figure 1). Their structures were elucidated on the basis of analysis of their spectroscopic data including IR, UV, NMR, and MS. The relative configuration was assigned based on NOEDIFF data. Furthermore, the absolute configuration of compound 1 was determined by comparison of its specific rotation and

• the trisubstituted α,β-unsaturated carboxylic acid. In addition, a trans relationship between H-6 and H-11 was established according to signal enhancement of H-12 (δH 1.71), H3-13, and H3-14 after irradiation of H-6. The absolute configuration at C-6 was assigned as R based on the experimental ECD

Four bioactive new steroids from the soft coral Lobophytum pauciflorum collected in South China Sea

• Di Zhang,
• Zhe Wang,
• Xiao Han,
• Xiao-Lei Li,
• Zhong-Yu Lu,
• Bei-Bei Dou,
• Wen-Ze Zhang,
• Xu-Li Tang,
• Ping-Lin Li and
• Guo-Qiang Li

Beilstein J. Org. Chem. 2022, 18, 374–380, doi:10.3762/bjoc.18.42

• structurally related compounds reported in the literature. The absolute configuration of 1–3 was determined by X-ray diffraction. All the compounds have assessed the cytotoxicity against HL-60, K562, and Hela cells. Compound 1 showed weak cytotoxicity against K562 cells with an IC50 value of 19.03 μM. In

• particular, compound 1 also has a tetracyclic skeleton with a methyl group at C-4. The absolute configuration of 1–3 was determined by X-ray analysis. Herein, we report the isolation, structure elucidation, and bioactivities of these compounds. Results and Discussion Compound 1 was isolated as a white powder

• NOESY correlations of H3-18 with H3-21 suggested the E geometry of Δ17(20). Finally, the absolute configuration of compound 1 was established by single-crystal X-ray diffraction analysis (Figure 4) carried out using Cu Kα radiation with a Flack parameter of 0.0(2). Compound 2, was isolated as a white

Amamistatins isolated from Nocardia altamirensis

• Till Steinmetz,
• Wolf Hiller and
• Markus Nett

Beilstein J. Org. Chem. 2022, 18, 360–367, doi:10.3762/bjoc.18.40

• compounds did not show any discrepancies in their NOESY spectra in comparison to 5. This suggests that 1, 3, 4, and 5 possess the same absolute configuration. Measurements of 2 were not possible due to the low quantity of isolated material, but it stands to reason that its configuration is identical to 5

• function. Due to the similarity of both molecules, we propose that compound 6 possesses the same absolute configuration as pseudomonin A. The affinities of compound 1–6 for the coordination of ferric iron were evaluated with the CAS assay [9] and compared with EDTA [13]. While the half-maximal displacement

• conditions. The structures of these natural products were verified by high-resolution mass spectrometry, tandem mass spectrometry as well as 1D and 2D NMR analyses. Their absolute configuration is consistent with the already known amamistatin B according to a comparison of optical rotation values and NOE

Unexpected chiral vicinal tetrasubstituted diamines via borylcopper-mediated homocoupling of isatin imines

• Marco Manenti,
• Leonardo Lo Presti,
• Giorgio Molteni and
• Alessandra Silvani

Beilstein J. Org. Chem. 2022, 18, 303–308, doi:10.3762/bjoc.18.34

• space group P212121. The presence of sulfur anomalous scatters allowed to unequivocally establish the absolute configurations, which reads S at the chiral center C2 and R at the C10 (C numbering as in Figure 1). The absolute configuration of the two sulfur stereogenic centers is confirmed to be R

Regioselectivity of the S_EAr-based cyclizations and S_EAr-terminated annulations of 3,5-unsubstituted, 4-substituted indoles

• Jonali Das and
• Sajal Kumar Das

Beilstein J. Org. Chem. 2022, 18, 293–302, doi:10.3762/bjoc.18.33

• (4 mol %) and ligand L2, the ring closure also took place regioselectively at the indole C3 position, albeit the products 3 were embedded with a seven-membered ring instead of a nine-membered one. The absolute configuration of products 3 was proposed to be S, based on the general rule of

Organocatalytic asymmetric nitroso aldol reaction of α-substituted malonamates

• Ekta Gupta,
• Narendra Kumar Vaishanv,
• Sandeep Kumar,
• Raja Krishnan Purshottam,
• Ruchir Kant and
• Kishor Mohanan

Beilstein J. Org. Chem. 2022, 18, 217–224, doi:10.3762/bjoc.18.25

• absolute configuration of C7 is S. Proposed transition state for the nitroso aldol reaction. Catalytic asymmetric nitroso aldol reaction. Variation of the amide moiety of malonamates. General conditions: 1 (0.20 mmol), 2a (0.24 mmol), 3a (0.04 mmol), toluene (3.0 mL). Yields refer to isolated yields after

Glycosylated coumarins, flavonoids, lignans and phenylpropanoids from Wikstroemia nutans and their biological activities

• Meifang Wu,
• Xiangdong Su,
• Yichuang Wu,
• Yuanjing Luo,
• Ying Guo and
• Yongbo Xue

Beilstein J. Org. Chem. 2022, 18, 200–207, doi:10.3762/bjoc.18.23

• including its absolute configuration was elucidated based on a combination of 1D and 2D NMR, UV, IR, HRESIMS spectroscopic data, as well as chemical transformation. Compounds 1–17 were first isolated from the plant species W. nutans, while compounds 1–3, 8, and 11 were reported from the genus Wikstroemia

Bifunctional thiourea-catalyzed asymmetric [3 + 2] annulation reactions of 2-isothiocyanato-1-indanones with barbiturate-based olefins

• Jiang-Song Zhai and
• Da-Ming Du

Beilstein J. Org. Chem. 2022, 18, 25–36, doi:10.3762/bjoc.18.3

• solubility of this substrate. The absolute configuration of the chiral product 3ae was unambiguously identified on the basis of single-crystal X-ray diffraction analysis as (2S,3'S) (Figure 4) [33]. The configurations of the other products were assigned by analogy to 3ae. In order to further prove the

The enzyme mechanism of patchoulol synthase

• Houchao Xu,
• Bernd Goldfuss,
• Gregor Schnakenburg and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 13–24, doi:10.3762/bjoc.18.2

• no. 1491695) [17], but these data did not allow to conclude on the absolute configuration of compound 3. We now obtained 3 as a crystalline material and performed an X-ray structural analysis through anomalous dispersion using Cu Kα irradiation (Table S2 in Supporting Information File 1), resulting

• in the structure of 3 with the absolute configuration as shown in Figure 2. The absolute configuration of 3 was furthermore independently confirmed through a stereoselective deuteration strategy (Scheme 4; all labelling experiments of this study are summarised in Supporting Information File 1, Table

• deuterated carbons. The NOESY-based assignment of the diastereotopic hydrogens at these carbons for the unlabelled compound then allows to conclude on the absolute configuration of alcohol 3. A second set of experiments made use of (R)- and (S)-(1-13C,1-2H)IPP [20] that were enzymatically converted with

Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes

• Shun Saito,
• Kanji Indo,
• Naoya Oku,
• Hisayuki Komaki,
• Masashi Kawasaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2939–2949, doi:10.3762/bjoc.17.203

• hydroxylation on the same carbon. This was supported by COSY correlations establishing the connectivity from H-5 to H-8, and completely the same HMBC and NOESY correlations for the remaining part to those observed for 1 and 2 (Figure 2). To address the absolute configuration, 4 was esterified with TMS

• -7 to C-1' and from H-1' to C-6. The absolute configuration was determined by chiral anisotropy analysis after derivatization with each of the phenylglycine methyl ester (PGME) enantiomers [27], which gave positive ΔδH(S-R) values for NH-1, H-2, H-4, H-5 and H-8 and negative values for H-9, NH-11 and

Solvent-free synthesis of enantioenriched β-silyl nitroalkanes under organocatalytic conditions

• Akhil K. Dubey and
• Raghunath Chowdhury

Beilstein J. Org. Chem. 2021, 17, 2642–2649, doi:10.3762/bjoc.17.177

• dictated by the absolute configuration of the products. To our delight, catalyst VIII, the pseudoenantiomeric catalyst of VII, allowed to synthesize the enantiomeric products ent-3 (Scheme 3) in high yields and enantioselectivities comparable to the corresponding enantiomers 3 under the optimized reaction

Targeting active site residues and structural anchoring positions in terpene synthases

• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 2441–2449, doi:10.3762/bjoc.17.161

• . Table S3 and Figure S8. Determination of the absolute configuration of compounds 8 and 9. Partial HSQC spectra of A) unlabelled 8, B) unlabelled 9, C) the mixture of labelled 8 and 9 obtained from (R)-(1-13C,1-2H)GGPP, and D) the mixture of labelled 8 and 9 obtained from (S)-(1-13C,1-2H)GGPP. The colour

Enantioselective PCCP Brønsted acid-catalyzed aminalization of aldehydes

• Martin Kamlar,
• Robert Reiberger,
• Martin Nigríni,
• Ivana Císařová and
• Jan Veselý

Beilstein J. Org. Chem. 2021, 17, 2433–2440, doi:10.3762/bjoc.17.160

• time. To determine the absolute configuration of aminals 3a–t, derivative 3l was subjected to X-ray crystallographic analysis. The absolute configuration of the stereogenic center (C1) was assigned as R (Figure 2, for details see Supporting Information File 1) [36], which is in agreement with the

Strategies for the synthesis of brevipolides

• Yudhi D. Kurniawan and
• A'liyatur Rosyidah

Beilstein J. Org. Chem. 2021, 17, 2399–2416, doi:10.3762/bjoc.17.157

• compounds, 1–6, were given the trivial names of brevipolides A–F, respectively, and the absolute configuration was determined by analysis of data obtained from their CD spectra and by Mosher’s ester formation, as C6R, C1’S, C2’S, and C4’S. The C6’ stereocenter at that time could not be established due to a

• comprehensive combination of quantum mechanical calculations and experimental spectroscopic analysis of their NMR and ECD data, to have a unique tetrahydrofuran ring instead of the cyclopropane functionality. The absolute configuration of these five compounds were evaluated and all conserved as C6R, C1’S, C2’R

Isolation and characterization of new phenolic siderophores with antimicrobial properties from Pseudomonas sp. UIAU-6B

• Emmanuel T. Oluwabusola,
• Olusoji O. Adebisi,
• Fernando Reyes,
• Kojo S. Acquah,
• Mercedes De La Cruz,
• Larry L. Mweetwa,
• Joy E. Rajakulendran,
• Digby F. Warner,
• Deng Hai,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2021, 17, 2390–2398, doi:10.3762/bjoc.17.156

• analyses. The absolute configuration of the threonine residue in compounds 1–5 was determined by Marfey analysis. The antimicrobial evaluation of compound 4 exhibited the most potent activity against vancomycin-sensitive Enterococcus faecium VS144754, followed by 3 and 5, with MIC values ranging from 8 to

• carboxamide C-10 (δC 172.9) and the quaternary carbon C-16 (δC 140.2), between H2-15 and H-18/20 to the quaternary carbon C-16, and a strong correlation from H-15 and H-19 to C-17/20 (δC 129.9). The new oxazoline derivative 5 was named pseudomonbactin B. The absolute configuration of the threonine residue in

Phenolic constituents from twigs of Aleurites fordii and their biological activities

• Kyoung Jin Park,
• Won Se Suh,
• Da Hye Yoon,
• Chung Sub Kim,
• Sun Yeou Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2021, 17, 2329–2339, doi:10.3762/bjoc.17.151

• [15]. The relative configuration at C-7/C-8 of 1 was established as trans through the relatively small coupling constant (6.1 Hz) [10][16]. The analysis of the ECD spectrum of 1 determined the absolute configuration of 1 to be 7S and 8R (positive Cotton effects (CEs) at 292 and 248 nm, and a negative

• spectrum of 2 showed negative CEs at 276 nm and 229 nm and a positive CE at 248 nm, indicating the absolute configuration of C-7 and C-8 as R (Figure S15 in Supporting Information File 1) [19]. Therefore, the structure of compound 2 was determined to be (7R,8R)-dihydrodehydrodiconiferyl alcohol 4-O-α-ʟ

• absolute configuration. The planar structure of 3 was further confirmed by analysis of 2D NMR data, including COSY, HSQC, and HMBC (Figure 2). The determination of the stereochemistry for the sugar unit of 3 was conducted following the same method as for compound 2. The structure of the aglycone 3a

Nomimicins B–D, new tetronate-class polyketides from a marine-derived actinomycete of the genus Actinomadura

• Zhiwei Zhang,
• Tao Zhou,
• Taehui Yang,
• Keisuke Fukaya,
• Enjuro Harunari,
• Shun Saito,
• Katsuhisa Yamada,
• Chiaki Imada,
• Daisuke Urabe and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2194–2202, doi:10.3762/bjoc.17.141

• absolute configuration was determined by combination of NOESY/ROESY and ECD analyses. Nomimicins B, C, and D showed antimicrobial activity against Gram-positive bacteria, Kocuria rhizophila and Bacillus subtilis, with MIC values in the range of 6.5 to 12.5 μg/mL. Nomimicins B and C also displayed

• (Table S1, Supporting Information File 1) and 3JHH coupling constants [15]. The absolute configuration of 1 was deduced to be the same as 4 in consideration of the overall similarity of the electronic circular dichroism (ECD) spectra of 1 and 4 (Figure 4). This proposition was evidenced by the density

• functional theory (DFT) calculation of the ECD spectrum for 4, for which the absolute configuration was established by the modified Mosher’s method in our previous work [15]. Since the acyltetronic acid exists as a mixture of keto–enol tautomers, the calculation was carried out using the four possible

Asymmetric organocatalyzed synthesis of coumarin derivatives

• Natália M. Moreira,
• Lorena S. R. Martelli and
• Arlene G. Corrêa

Beilstein J. Org. Chem. 2021, 17, 1952–1980, doi:10.3762/bjoc.17.128

• substitution reaction between the coumarin and the activated MBH substrate, it is possible to obtain functionalized coumarins 41 (Scheme 13). Furthermore, the absolute configuration of the stereogenic center was determined by X-ray crystallography. The enantioselective synthesis of cyclopropa[c]coumarins 45

• half-thioesters 67 to coumarins 66 using a sulphonamide organocatalyst 69 was reported by Nakamura et al. [55]. The hydrogen bond between the secondary amine and the coumarin carboxyl provides a nucleophilic addition on the Re face, and therefore resulting in products 68 with R absolute configuration

• with high ee in the two first cycles, although the yield of the product in the first cycle was lower (Scheme 28b). Finally, the absolute configuration of the products was determined by ECD analysis. Zheng et al. described an asymmetric organocatalyzed domino reaction between 4-hydroxycoumarins 1 and