Nomimicins B–D, new tetronate-class polyketides from a marine-derived actinomycete of the genus Actinomadura

• Zhiwei Zhang,
• Tao Zhou,
• Taehui Yang,
• Keisuke Fukaya,
• Enjuro Harunari,
• Shun Saito,
• Katsuhisa Yamada,
• Chiaki Imada,
• Daisuke Urabe and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2194–2202, doi:10.3762/bjoc.17.141

• functional theory (DFT) calculation of the ECD spectrum for 4, for which the absolute configuration was established by the modified Mosher’s method in our previous work [15]. Since the acyltetronic acid exists as a mixture of keto–enol tautomers, the calculation was carried out using the four possible

• 26, 22, and 31 DFT-optimized structures, respectively. The spectrum of 4 was created using the weighted average of the spectra of all low-lying conformers of 4a–d according to the respective Boltzmann distribution. The Cartesian coordinates and the energies of the most stable conformers for each

Sustainable manganese catalysis for late-stage C–H functionalization of bioactive structural motifs

• Jongwoo Son

Beilstein J. Org. Chem. 2021, 17, 1733–1751, doi:10.3762/bjoc.17.122

• . Additionally, difluorination was observed with negligible amounts because the monofluorinated product is rendered more electronically deficient by the first fluorine atom. Based on an analysis by DFT calculations, the postulated reaction pathway of manganese-catalyzed C–H fluorination is described in Figure 1

Electron-rich triarylphosphines as nucleophilic catalysts for oxa-Michael reactions

• Susanne M. Fischer,
• Simon Renner,
• A. Daniel Boese and
• Christian Slugovc

Beilstein J. Org. Chem. 2021, 17, 1689–1697, doi:10.3762/bjoc.17.117

• radical cations of the phosphines under investigation were calculated by density functional theory (DFT), namely B3LYP-def2-TZVPPD. According to criterion introduced by Stewart et al. postulating air stability of phosphines when the SOMO energy is higher than −10 eV, the three derivatives should be air

• activity of differently substituted triarylphosphines in the oxa-Michael addition of alcohols to electron-deficient olefins was investigated. In general, the activity increases with increasing methoxy-substitution in the order TPP < MMTPP < TMTPP. The activity order was rationalized based on DFT

2,4-Bis(arylethynyl)-9-chloro-5,6,7,8-tetrahydroacridines: synthesis and photophysical properties

• Najeh Tka,
• Mohamed Adnene Hadj Ayed,
• Mourad Ben Braiek,
• Mahjoub Jabli,
• Noureddine Chaaben,
• Kamel Alimi,
• Stefan Jopp and
• Peter Langer

Beilstein J. Org. Chem. 2021, 17, 1629–1640, doi:10.3762/bjoc.17.115

• molecules have been examined. Additionally, theoretical studies based on density functional theory (DFT/B3LYP/6-31G(d)) were carried out. Keywords: alkynes; catalysis; cross-coupling; heterocycles; palladium; Introduction The development and design of small π-conjugated molecules have attracted increasing

• studies and as a part of our interest in discovering new organic materials applications [61][62][63], we herein report the synthesis of new 2,4-bis(arylethynyl)-9-chloro-5,6,7,8-tetrahydroacridine derivatives. The investigation of their photophysical properties and theoretical DFT studies were achieved

• relative method using quinine sulfate [70]. Tetrahydroacridine derivative 4g containing an electron-donating methoxy substituent gave the highest fluorescence intensity as shown in Figure 3 and a quantum yield of 20%. DFT studies The arylethynyl substituents showed an impact on the absorption and emission

A recent overview on the synthesis of 1,4,5-trisubstituted 1,2,3-triazoles

• Pezhman Shiri,
• Ali Mohammad Amani and
• Thomas Mayer-Gall

Beilstein J. Org. Chem. 2021, 17, 1600–1628, doi:10.3762/bjoc.17.114

• investigated by means of DFT calculations using the reaction between enaminone 6a and phenyl azide. TS1 and TS2 have been proposed as two transition states, which then converted to IN1 and IN2 as two possible isomers. The stable final products were achieved via a cascade reaction including the elimination of

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

Fritsch–Buttenberg–Wiechell rearrangement of magnesium alkylidene carbenoids leading to the formation of alkynes

• Tsutomu Kimura,
• Koto Sekiguchi,
• Akane Ando and
• Aki Imafuji

Beilstein J. Org. Chem. 2021, 17, 1352–1359, doi:10.3762/bjoc.17.94

• magnesium alkylidene carbenoids was studied by using 13C-labeled sulfoxides and by using DFT calculations. Keywords: alkyne; 1-chlorovinyl p-tolyl sulfoxide; DFT calculation; Fritsch–Buttenberg–Wiechell rearrangement; magnesium alkylidene carbenoid; Introduction Alkynes are important compounds in organic

• rearrangement of magnesium alkylidene carbenoids 3 by using 13C-labeled sulfoxides and by using DFT calculations is also described. Results and Discussion Synthesis of 1-heteroatom-substituted vinyl p-tolyl sulfoxides As magnesium alkylidene carbenoid precursors, a series of 1-heteroatom-substituted vinyl p

• (Scheme 3a). The 2,2-unsymmetrically substituted sulfoxides 2d–g were obtained as mixtures of geometric isomers that were separated by column chromatography on silica gel. FBW rearrangement of magnesium alkylidene carbenoids Based on the results of DFT calculations, the degree of the vinylidene character

Structural effects of meso-halogenation on porphyrins

• Keith J. Flanagan,
• Maximilian Paradiz Dominguez,
• Zoi Melissari,
• Hans-Georg Eckhardt,
• René M. Williams,
• Dáire Gibbons,
• Caroline Prior,
• Gemma M. Locke,
• Alina Meindl,
• Aoife A. Ryan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2021, 17, 1149–1170, doi:10.3762/bjoc.17.88

• need of crystallization, using DFT calculations with a high degree of accuracy. Keywords: conformational analysis; crystal engineering; halogenation; macrocycles; porphyrins; Introduction Crystal engineering using porphyrins as a scaffolding unit has been a topic of increasing interest over the past

• formation of the crystal networks. This is complemented with the use of density functional theory (DFT) calculation of structures that have currently not been determined due to difficulties of obtained crystals of sufficient quality for X-ray determination. Additionally, DFT calculations were conducted for

• structures, the features are generally similar to each other. DFT calculations and NSD analysis The limited availability of meso-halogenic porphyrin crystal structures in the CSD makes it difficult to study a complete series. While we can develop certain trends based on the current data sets, the gaps

N-tert-Butanesulfinyl imines in the asymmetric synthesis of nitrogen-containing heterocycles

• Joseane A. Mendes,
• Paulo R. R. Costa,
• Miguel Yus,
• Francisco Foubelo and
• Camilla D. Buarque

Beilstein J. Org. Chem. 2021, 17, 1096–1140, doi:10.3762/bjoc.17.86

• %) from allylic sulfonamides 40 and Togni’s reagent (41). The reaction mechanism is proposed based on DFT calculations. In this study, they observed an intramolecularly intermediate Cu(III) species, and the sulfinamide acts as a direction group and nucleophile [75] (Scheme 14). Asymmetric synthesis of

• proceeded with high levels of diastereocontrol. The resulting sulfonamide derivatives 95 were transformed into the target spiro compound 97 by performing successive desulfinylation and intramolecular palladium-catalyzed N-arylation. To rationalize the stereochemical course of the addition, DFT calculations

Recent advances in palladium-catalysed asymmetric 1,4–additions of arylboronic acids to conjugated enones and chromones

• Jan Bartáček,
• Jan Svoboda,
• Martin Kocúrik,
• Jaroslav Pochobradský,
• Alexander Čegan,
• Miloš Sedlák and
• Jiří Váňa

Beilstein J. Org. Chem. 2021, 17, 1048–1085, doi:10.3762/bjoc.17.84

• catalytically relevant species is monomeric Pd–PyOx. This was further supported by a mass spectrometric study [52]. The catalytic cycle was also suggested in accordance with DFT calculations and mechanistic studies (Scheme 13) [48][49]. The key step for both, the enantioselectivity and turnover, is the

Metal-free glycosylation with glycosyl fluorides in liquid SO₂

• Krista Gulbe,
• Jevgeņija Lugiņina,
• Edijs Jansons,
• Artis Kinens and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 964–976, doi:10.3762/bjoc.17.78

• of an ammonium salt. The 19F NMR spectra of the water-soluble components was than compared to the standard obtained from the reaction between TBAF and SO2. The peak that corresponds to the FSO2− anion was observed at 38.34 ppm (TFA as an external standard, −76.55 ppm) [77]. Also DFT calculations were

• the glycosylation in liquid SO2 was proved by employing 19F NMR spectroscopy and DFT calculations. Finally, a more conventional experimental procedure has been provided for the application of saturated SO2 solution in DCM or toluene. This protocol does not require specific equipment and the reactions

• ; reaction optimization data; reactivity of other glycosyl donors; proposed structures of side-products; detailed description of 19F NMR studies; stability tests for various glycosyl donors. Supporting Information File 145: Copies of NMR spectra. Supporting Information File 146: DFT calculations. Funding

Prins cyclization-mediated stereoselective synthesis of tetrahydropyrans and dihydropyrans: an inspection of twenty years

• Asha Budakoti,
• Pradip Kumar Mondal,
• Prachi Verma and
• Jagadish Khamrai

Beilstein J. Org. Chem. 2021, 17, 932–963, doi:10.3762/bjoc.17.77

• and co-workers explained the formation of all-cis-2,4,6-trisubstituted THPs with the help of density functional theory (DFT) and stated that in the presence of an external nucleophile, the stabilization of the carbocation intermediate is favored through hyperconjugation [28]. The vacant p-orbital of

• cyclization and minimizes the competitive 2-oxonia-[3,3]-sigmatropic rearrangement pathway. The reaction was highly stereoselective and afforded the cis-2,6-dihydropyran in the presence of Lewis acid FeCl3. From DFT calculations, the authors concluded that the Prins product is formed more rapidly than the α

• based on DFT calculations. A different [2 + 2]-cycloaddition process was suggested to rationalize the observed OH-selectivity. In 2015, Padrón and co-workers also reported the Prins cyclization catalyzed by a Fe(III) and trimethylsilyl halide system for the synthesis of all-cis-2,4,6-trisubstituted THP

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• including EPR, NMR, and DFT have been carried out to prove that the reaction mechanism is consistent with inference (Scheme 58). The construction of C–O bonds and C–H bonds Although there have been few cases of constructing C–O bonds and C–H bonds via EDA-complex pathways in recent years, we also summarized

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

• Mio Matsumura,
• Takahiro Teramoto,
• Masato Kawakubo,
• Masatoshi Kawahata,
• Yuki Murata,
• Kentaro Yamaguchi,
• Masanobu Uchiyama and
• Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

• (DFT) calculations [27] were performed at the B3LYP/LanL2DZ level of theory to gain additional understanding of the electronic structures. The HOMO and LUMO energies of the selected compounds are listed in Table 3. The DFT calculations showed that these compounds have HOMO–LUMO gaps of 3.60–3.96 eV

• delocalized in the lone-pair orbitals on the sulfur atom, resulting in considerable destabilization and significantly small HOMO–LUMO gap compared to those of other phospholes 2, 3, 5, and 6. This result is similar to the reduction potentials of compounds 2 and 6. According to time-dependent DFT calculations

Amino- and polyaminophthalazin-1(2H)-ones: synthesis, coordination properties, and biological activity

• Zbigniew Malinowski,
• Emilia Fornal,
• Agata Sumara,
• Renata Kontek,
• Karol Bukowski,
• Beata Pasternak,
• Dariusz Sroczyński,
• Joachim Kusz,
• Magdalena Małecka and
• Monika Nowak

Beilstein J. Org. Chem. 2021, 17, 558–568, doi:10.3762/bjoc.17.50

• unit. Their geometry was fully optimized in vacuum using the DFT method with the crystal structure coordinates as the input geometry (optimized at the CAM-B3LYP/6–311++G(d,p)/LanL2DZ(Cu) level of theory). However, due to the convergence failure during the geometry optimization of the dimer of molecules

• the coordination of copper(II) through nitrogen atoms of the pyridin-2-yl substituent, the pyridazin-3-one moiety, and the 2-(dimethylamino)ethyl group. In the vis–NIR spectrum recorded in methanol, based on TD-DFT calculations, the d–d, metal–ligand charge transfer (MLCT), ligand–metal charge

Mesoionic tetrazolium-5-aminides: Synthesis, molecular and crystal structures, UV–vis spectra, and DFT calculations

• Vladislav A. Budevich,
• Sergei V. Voitekhovich,
• Alexander V. Zuraev,
• Vadim E. Matulis,
• Vitaly E. Matulis,
• Alexander S. Lyakhov,
• Ludmila S. Ivashkevich and
• Oleg A. Ivashkevich

Beilstein J. Org. Chem. 2021, 17, 385–395, doi:10.3762/bjoc.17.34

• : aminotetrazoles; DFT; mesoionic compounds; UV–vis spectra; X-ray analysis; Introduction 5-Aminotetrazoles are one of the most available and valuable tetrazole derivatives. So, due to the thermal stability and high nitrogen content the parent 5-aminotetrazole (1, Figure 1) is of practical interest as a gas

• structures are known [17][28]. Thus, the information on tetrazole-5-aminides is very limited and fragmentary. In the present work, we try to fill this gap by carrying out experimental (synthesis, X-ray, UV–vis) and theoretical density functional theory (DFT) studies of some selected 1,3-dialkyltetrazolium-5

• –vis spectra and charge transfer were carried out within density functional theory for ground states and time-dependent density functional theory (TD-DFT) for excited states using the τ-dependent hybrid tHCTHhyb functional [37] with the 6-311+G(2d,p) basis set [38]. The chosen functional allows to

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• also confirmed by DFT calculations at the B3LYP/6-31G* level, with a C2–C3 bond considerably shorter than the C1–C2 bond, with dC2–C3 = 1.359 Å and dC1–C2 = 1.427 Å. More recently, Vasilyev et al. reported that Lewis acid activation of α-(trifluoromethyl)allyl alcohol 101 allowed the transient

Diels–Alder reaction of β-fluoro-β-nitrostyrenes with cyclic dienes

• Savva A. Ponomarev,
• Roman V. Larkovich,
• Alexander S. Aldoshin,
• Andrey A. Tabolin,
• Sema L. Ioffe,
• Jonathan Groß,
• Till Opatz and
• Valentine G. Nenajdenko

Beilstein J. Org. Chem. 2021, 17, 283–292, doi:10.3762/bjoc.17.27

• File 206: Copies of spectra, experimental section, and computational details of DFT calculations. Acknowledgements The authors acknowledge the partial support in measuring of NMR spectra from the M. V. Lomonosov Moscow State University Program of Development. We thank Jan Brauer and Paul Eckhardt for

Exploring the possibility of using fluorine-involved non-conjugated electron-withdrawing groups for thermally activated delayed fluorescence emitters by TD-DFT calculation

• Dongyang Chen and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2021, 17, 210–223, doi:10.3762/bjoc.17.21

• states between S1 and T1, thus likely leading to a very efficient reverse intersystem crossing in these compounds. Keywords: DFT calculation; pentafluorosulfanyl; spin-orbit coupling; TADF; trifluoromethoxy; trifluoromethylthio; Introduction Organic thermally activated delayed fluorescence (TADF

• states, followed by rISC [22]. This situation typically occurs when there are multiple donors about a single acceptor as exists in the molecules 5CzBN and 5CzTRZ. For 5CzBN, time-dependent density functional theory (TD-DFT) calculation revealed the existence of three intermediate triplet states [22]. The

• presence of these states helped to explain the short τd of 3.7 μs and the high EQEmax of 17% and good device stability with a T50 of 176 hours for the OLED [CIE coordinate (0.22, 0.40)] [23]. In an analogous manner, TD-DFT calculations predicted 5CzTRZ to possess a small ΔEST (0.02 eV) as well as a small

Direct synthesis of anomeric tetrazolyl iminosugars from sugar-derived lactams

• Michał M. Więcław and
• Bartłomiej Furman

Beilstein J. Org. Chem. 2021, 17, 115–123, doi:10.3762/bjoc.17.12

• azide addition to nitriles [45]. It is important to note that the computational investigation of this reaction mechanism was not a primary goal of this work. That said, we consider this simple, crude DFT research to support our model of the transformation described herein. Conclusion During the course

• requires protic conditions, in opposition to what is generally agreed upon for these type of reactions. An alternative reaction mechanism is proposed and provisionally confirmed with DFT calculations. Moreover, selected α-tetrazolyl-iminosugars were subjected to further transformations, yielding new

Pentannulation of N-heterocycles by a tandem gold-catalyzed [3,3]-rearrangement/Nazarov reaction of propargyl ester derivatives: a computational study on the crucial role of the nitrogen atom

• Giovanna Zanella,
• Martina Petrović,
• Dina Scarpi,
• Ernesto G. Occhiato and
• Enrique Gómez-Bengoa

Beilstein J. Org. Chem. 2020, 16, 3059–3068, doi:10.3762/bjoc.16.255

• substrates. Keywords: DFT calculations; gold catalysis; Nazarov reaction; N-heterocycles; Introduction In the development of new and effective catalysts, step economy is surely one of the major goals. A reduction of the number of steps in the synthesis of complex compounds can be attained by cascade

• sluggish reactivity of the 3-substituted substrates, in comparison to the 2-substituted analogues that we have previously described. Tandem acetate rearrangement/Nazarov cyclization of different substrates. DFT-computed energy profile of the tandem Au(I)-catalyzed [3,3]-rearrangement/Nazarov reaction of 3

• -substituted piperidine derivatives. DFT-computed energy profile of the tandem Au(I)-catalyzed [3,3]-rearrangement/Nazarov reaction of 2-substituted piperidine derivatives. Computed comparison of the NBO charges of 2- and 3-substituted substrates. Single-step transformation of IV to IX. Triflate-promoted

Naphthalonitriles featuring efficient emission in solution and in the solid state

• Sidharth Thulaseedharan Nair Sailaja,
• Iván Maisuls,
• Jutta Kösters,
• Alexander Hepp,
• Andreas Faust,
• Jens Voskuhl and
• Cristian A. Strassert

Beilstein J. Org. Chem. 2020, 16, 2960–2970, doi:10.3762/bjoc.16.246

• contributing to the emissive singlet state cannot be entirely ruled out; besides the obvious lack of solvent stabilization in frozen matrices, a TICT suppression at 77 K can also account for the blue-shifted emission in the frozen glassy matrix. However, further transient-absorption experiments and TD-DFT

UV resonance Raman spectroscopy of the supramolecular ligand guanidiniocarbonyl indole (GCI) with 244 nm laser excitation

• Tim Holtum,
• Vikas Kumar,
• Daniel Sebena,
• Jens Voskuhl and
• Sebastian Schlücker

Beilstein J. Org. Chem. 2020, 16, 2911–2919, doi:10.3762/bjoc.16.240

• the results from density functional theory (DFT) calculations. Keywords: GCI; GCP; guanidiniocarbonyl indole; guanidiniocarbonyl pyrrole; UVRR; Raman spectroscopy; resonance Raman; Introduction Supramolecular ligands are capable to selectively bind to peptides and proteins via reversible non

• –1800 cm−1. Peaks appearing within the 900–1100 cm−1 region cover various pyrrole ring deformation modes while the peak at 1400 cm−1 belongs to a symmetrical half-ring vibration of pyrrole [13]. Based on the results from DFT calculations [13], the peaks around 1470 cm−1 are assigned to N–H bending and C

• the results from density functional theory (DFT) calculations. The assignment of the peaks detectable in the experimental UVRR spectrum is mainly based on the experimental wavenumber position (peak position). Only normal modes with non-vanishing Raman activities were considered. One cannot expect an

Fluorine effect in nucleophilic fluorination at C4 of 1,6-anhydro-2,3-dideoxy-2,3-difluoro-β-D-hexopyranose

• Danny Lainé,
• Vincent Denavit,
• Olivier Lessard,
• Laurie Carrier,
• Charles-Émile Fecteau,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2020, 16, 2880–2887, doi:10.3762/bjoc.16.237

• density functional theory (DFT) calculations). Finally, we wish to report the preparation of novel multi-vicinal fluorinated alditol analogues using a simple reduction protocol. Results and Discussion We initially supposed that DAST, a commonly used reagent to install fluorine atoms on the carbohydrate

• , DFT calculations were performed with Gaussian 09, revision E.01 [44] to evaluate the hypothesis for the formation of oxiranium ion A. Calculations were performed with the CAM-B3LYP functional [45][46][47] using Grimme’s D3 dispersion correction [48] and the 6-31+G(d,p) basis set. The results of our

Ring-closing metathesis of prochiral oxaenediynes to racemic 4-alkenyl-2-alkynyl-3,6-dihydro-2H-pyrans

• Viola Kolaříková,
• Markéta Rybáčková,
• Martin Svoboda and
• Jaroslav Kvíčala

Beilstein J. Org. Chem. 2020, 16, 2757–2768, doi:10.3762/bjoc.16.226

• -2,7-diyne reacted chemo- and stereoselectively in a Diels–Alder reaction with N-phenylmaleimide affording the tricyclic products as a mixture of two separable diastereoisomers, the configuration of which was estimated by DFT computations. The reported enediyne metathesis paves the way to the

• ]. The reaction at rt in dichloromethane gave the target product 14 in a moderate 45% isolated yield as a mixture of two diastereoisomers (Scheme 14). Pure diastereoisomers were obtained by column chromatography in 24% and 17% yield, respectively. DFT study of the Diels–Alder reaction of compounds 12b

• obtained two diastereoisomers, we decided to perform a short DFT study of the Diels–Alder reaction between dihydropyran 12b and maleimide 13. We started the study with the optimization of the starting compound. While the optimization of the rigid maleimide 13 was straightforward, 18 conformations had to be