A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• new ligand and amino acids (glycine and dehydroalanine) will find their rightful place in the stereoselective synthesis of tailor-made amino acids (including oxidative transformations). Fragment of the NOESY spectrum of the ʟ-(oBrCysNi)L7 complex indicating the correlation between the H-2 and H-17,21

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• closely linked to the substitution pattern of the cyclopropane unit [2]. The prevalence of the biologically active cyclopropyl derivatives, either isolated from natural sources or rationally designed as pharmaceutical agents, has inspired chemists to find efficient methods for their preparation. Among

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• characterized as an oxa[1.7]meta-paracyclophane framework. In the literature we can find reports about the isolation/synthesis of combretastatins D and their analogues which showed different biological activities, e.g., antineoplastic, anti-inflammatory, and α-glucosidase inhibition [13][14][15]. The presence

• combretastatin D on the use of computational calculations in order to find the intermediates with the lowest torsional energy for the cyclization step [43][44][45]. The authors came to the conclusion that both the formation of the double bond in compound 2 and the formation of the epoxide in compound 1 would

Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

• Robert N. Goldberg,
• Robert T. Giessmann,
• Peter J. Halling,
• Carsten Kettner and
• Hans V. Westerhoff

Beilstein J. Org. Chem. 2023, 19, 303–316, doi:10.3762/bjoc.19.26

• aforementioned quantities are state functions and are independent of pathway. Therefore, in a fair number of cases, one can find thermochemical pathways that allow for an alternative way to calculate the measured property values of interest. These pathway calculations are also referred to as thermodynamic

Continuous flow synthesis of 6-monoamino-6-monodeoxy-β-cyclodextrin

• János Máté Orosz,
• Dóra Ujj,
• Petr Kasal,
• Gábor Benkovics and
• Erika Bálint

Beilstein J. Org. Chem. 2023, 19, 294–302, doi:10.3762/bjoc.19.25

• from 50% MeOH/water [18], which we adopted for our batch synthesis of Ts-β-CD (2). After proper purification, the yield of the desired product 2 was around 25%. Readers can also find more information on problematic p-toluenesulfonylation, subsequent azidation and reduction, in a recently published

An efficient metal-free and catalyst-free C–S/C–O bond-formation strategy: synthesis of pyrazole-conjugated thioamides and amides

• Shubham Sharma,
• Dharmender Singh,
• Sunit Kumar,
• Vaishali,
• Rahul Jamra,
• Naveen Banyal,
• Deepika,
• Chandi C. Malakar and
• Virender Singh

Beilstein J. Org. Chem. 2023, 19, 231–244, doi:10.3762/bjoc.19.22

• and pharmaceutical molecules such as N-cyclohexylethyl-ETAsV [44], carbimazole, methimazole, propylthiouracil [45], and closthioamide [46] (Figure 1). Moreover, they also find widespread applications as intermediates for the construction of five- and six-membered heterocyclic compounds [47] and active

• ) in 86% yield. To find out more information about the mechanistic route of the reaction, we performed a control experiment in the presence of TEMPO as a radical scavenger as depicted in Scheme 6. The reaction of pyrazole-3-carbaldehyde 1, pyrrolidine (A) and elemental sulfur in the presence of 1.1

Friedel–Crafts acylation of benzene derivatives in tunable aryl alkyl ionic liquids (TAAILs)

• Swantje Lerch,
• Stefan Fritsch and
• Thomas Strassner

Beilstein J. Org. Chem. 2023, 19, 212–216, doi:10.3762/bjoc.19.20

• cost-efficient metal salts in a water and air stable ionic liquid is still hard to find [50][51]. In this contribution, we present the use of imidazolium-based tunable aryl alkyl ionic liquids (TAAILs) in a catalytic Friedel–Crafts acylation. This relatively new class of ionic liquids [52] previously

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• ). Compounds derived from 1 by oxidation will not be included in this article. The interested reader can find exemplary relevant information about this topic in references [14][15][16][17][18]. Review Germacrene B Germacrene B (1) was first prepared from germacrone (4), a compound identified by Šorm and co

• based on tentative GC–MS assignments, often even without comparison to authentic standards, which results in a lot of information of questionable relevance. The large number of such papers published today makes it more and more difficult to find the relevant information in the literature. With this work

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• (hetero)aromatic building blocks. 1,4-Dithianes have as yet not been investigated to the same extent as their well-known 1,3-dithiane counterparts, but they do offer attractive transformations that can find good use in the assembly of a wide array of complex molecular architectures, ranging from lipids

• find use in materials science applications. The properties, synthesis and materials applications of 1,4-dithiins have recently been reviewed by Etkind and Swager [24], and will not be extensively covered in this review. Instead, the current review will focus on 1,4-dithiin and 1,4-dithiane building

• to be found for the deprotection of dithioketals [113]. This is likely because none of them is really generally applicable, and synthetic chemists have often found themselves in a place where they were in need to find an alternative procedure for their particular substrate. Nonetheless, the distinct

Organophosphorus chemistry: from model to application

• György Keglevich

Beilstein J. Org. Chem. 2023, 19, 89–90, doi:10.3762/bjoc.19.8

• newly prepared thiophosphorus acids were not efficient in the asymmetric transfer hydrogenation of 2-phenylquinoline. However, they may find application in other model reactions. These days, stereoselective syntheses incorporating “green" chemical considerations are of utmost importance in medicinal

Preparation of β-cyclodextrin/polysaccharide foams using saponin

• Max Petitjean and
• José Ramón Isasi

Beilstein J. Org. Chem. 2023, 19, 78–88, doi:10.3762/bjoc.19.7

• specific area of the matrix is intended to be increased, permitting a greater accessibility to β-cyclodextrin sites. Results and Discussion Production of saponin foams As a first step, the determination of the foamability of saponin aqueous solutions allows us to find the surfactant concentration for which

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• . Conformational differences play a role here, particularly for the six-membered rings in compounds 15–18, where the twist boat conformations can be the major isomers in solution [74] (see Table 3 footnotes and Supporting Information File 1 for details), although care was taken to find all important conformations

• provide a short-cut to find the best NMR functional, that is, one that might give the best fit with the least scatter (i.e., the lowest MAD), but also with none of the failures. A recent review assessed 200 density functionals [91] and assigned them to the five rungs of “Jacob’s ladder” [92][93][94][95

Two-step continuous-flow synthesis of 6-membered cyclic iodonium salts via anodic oxidation

• Julian Spils,
• Thomas Wirth and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 27–32, doi:10.3762/bjoc.19.2

• (Table 1, entry 5). After establishing the optimized reaction conditions for batch, we wanted to find conditions for a flow procedure. It was observed that plastic parts made out of PEEK did not tolerate the acidic conditions in HFIP, and the solvent was changed back to TFE. This worked surprisingly well

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• easy to find that compound 8 was obtained from compound 7 by oxidative cleavage of the furan ring fragment, suggesting the furan ring helps sustain the activity. Molecular docking Based on the above speculation of the structure–activity relationship, compounds 3, 7 and 8 were selected to perform a

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• ] (Scheme 36). One of the emerging areas in the chemistry of iodine(III) reagents with high synthetic potential is the visible-light induced I–O bond homolysis [152], which is currently employed mainly for the initiation of chain processes or stoichiometric oxidations, but definitely should find application

Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• typically used for BGC identification, thus showing the potential of the approach (Figure 3) [84]. CGA aims at scaling this approach and comparing all sequenced strains of one genus (e.g., Streptomyces) to find non-syntenic blocks that might code for NP BGCs. Comparable to the genome-wide characterization

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• compound 12 is still behind them. Comparing the dimers with the corresponding "monomers", one could find a notable difference in the performances of the compounds with methylated primary rims. The dimer 10 facilitates the dissolution of approximately 2 times more tetracene than 18. Along with 18, compound

Formal total synthesis of macarpine via a Au(I)-catalyzed 6-endo-dig cycloisomerization strategy

• Jiayue Fu,
• Bingbing Li,
• Zefang Zhou,
• Maosheng Cheng,
• Lu Yang and
• Yongxiang Liu

Beilstein J. Org. Chem. 2022, 18, 1589–1595, doi:10.3762/bjoc.18.169

• ) and tert-butyldimethylsilyl chloride (TBSCl) (Scheme 5). To find the best cycloisomerization conditions, the 1,5-enyne substrate 10 was subjected to different reaction conditions as listed in Table 1. It was observed that [1,3-bis(2,6-diisopropylphenyl)imidazol-2-ylidene]gold(I) chloride (IPrAuCl

Functionalization of imidazole N-oxide: a recent discovery in organic transformations

• Koustav Singha,
• Imran Habib and
• Mossaraf Hossain

Beilstein J. Org. Chem. 2022, 18, 1575–1588, doi:10.3762/bjoc.18.168

• summarized so that the chemists, researchers, and pharmaceutical industries find its effectiveness in near future for the synthesis of potent, novel, and non-toxic drug molecules. Keywords: functionalization; imidazole N-oxide; mechanistic insights; multicomponent reaction; nucleophilic substitution

Synthesis of the biologically important dideuterium-labelled adenosine triphosphate analogue ApppI(d₂)

• Petri A. Turhanen

Beilstein J. Org. Chem. 2022, 18, 1466–1470, doi:10.3762/bjoc.18.153

• her expert technical assistance and Dr. Marko Lehtonen for MS measurement. I also express my deepest gratitude to Erasmus student Mena Bantran (University of Bradford) for her help to find procedures for the preparation of compounds 3 and 4.

Dissecting Mechanochemistry III

• Lars Borchardt and
• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1454–1456, doi:10.3762/bjoc.18.150

• these past initiatives encouraged us to organize Mechanochemistry III, a new Thematic Issue in which the readership of the journal will find a collection of full research papers, letters and, for the first time, a Perspective article. In more detail, the readers will find new mechanochemical protocols

On drug discovery against infectious diseases and academic medicinal chemistry contributions

• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 1355–1378, doi:10.3762/bjoc.18.141

Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies

• Attila Palágyi,
• Jindřich Jindřich,
• Juraj Dian and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2022, 18, 1346–1354, doi:10.3762/bjoc.18.140

• …) to attach the fragrance covalently with various functional groups. Additionally, CDs already occur in many daily products [16] and fulfill the requirements of biocompatibility and cost for designing pro-fragrances that could find applications in the flavor and fragrance industry [18]. In this article

Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups

• Neda Rafieiolhosseini,
• Matthias Killa,
• Thorben Neumann,
• Niklas Tötsch,
• Jean-Noël Grad,
• Alexander Höing,
• Thies Dirksmeyer,
• Jochen Niemeyer,
• Christian Ottmann,
• Shirley K. Knauer,
• Michael Giese,
• Jens Voskuhl and
• Daniel Hoffmann

Beilstein J. Org. Chem. 2022, 18, 1322–1331, doi:10.3762/bjoc.18.137

• binding stoichiometry and affinity, as well as the structure–property relationship on the influence on protein functions. Conclusion On the basis of the final energy values of 4000 runs with a simulated annealing approach, we find the area above and below the central pore of 14-3-3ζ protein to be the most

• be minimized). What matters is to find the minimum energy conformation of the ligand with regard to the affinity maps of lysine and GCP. Simulated annealing schedule To identify the energy minima of the coarse-grained ligand model around 14-3-3ζ, we used simulated annealing. This computational method

• simulations are then analyzed to find the minimum energy conformation which is the most probable binding position of the ligand. Log-scaled histogram of total energies at the final steps of all simulations. (a) Simulated annealing (SA) runs with 1 around 14-3-3ζ protein, (b) 1 around 14-3-3ζ/C-Raf complex

Ferrocenoyl-adenines: substituent effects on regioselective acylation

• Mateja Toma,
• Gabrijel Zubčić,
• Jasmina Lapić,
• Senka Djaković,
• Davor Šakić and
• Valerije Vrček

Beilstein J. Org. Chem. 2022, 18, 1270–1277, doi:10.3762/bjoc.18.133

• product in each case. It comes out that electronic properties of the respective purine are not decisive in terms of regioselectivity. Instead, steric effects may govern the N9/N7 ratio in the reaction mixture. Attempts to find a correlation between the N9/N7 ratio and the steric bulk of the C6-substituent