Direct synthesis of acyl fluorides from carboxylic acids using benzothiazolium reagents

• Lilian M. Maas,
• Alex Haswell,
• Rory Hughes and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2024, 20, 921–930, doi:10.3762/bjoc.20.82

• highly electrophilic compound can react with the carboxylic acid in the presence of DIPEA via addition/elimination affording a thioic anhydride species E and a fluoride ion [9]. Addition of F− to the carboxyl carbon followed by fluoride elimination from the resulting thiocarboxylate would provide acyl

Synthesis and properties of 6-alkynyl-5-aryluracils

• Ruben Manuel Figueira de Abreu,
• Till Brockmann,
• Alexander Villinger,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 898–911, doi:10.3762/bjoc.20.80

• molecules within and between a layer with two molecules at the top and the bottom of the unit cell. b) Determined from X-ray structural analysis at 123 K. Element color: carbon (grey), hydrogen (white), oxygen (red) and nitrogen (blue). The thermal ellipsoids are drawn at the 50% probability level. UV–vis

Three-component N-alkenylation of azoles with alkynes and iodine(III) electrophile: synthesis of multisubstituted N-vinylazoles

• Jun Kikuchi,
• Roi Nakajima and
• Naohiko Yoshikai

Beilstein J. Org. Chem. 2024, 20, 891–897, doi:10.3762/bjoc.20.79

• difunctionalization of alkynes with various heteroatom and carbon nucleophiles [27][28][29][30][31][32][33][34]. Specifically, intermolecular trans-iodo(III)functionalization of alkynes has been achieved using oxygen nucleophiles such as alcohols [28][32], ethers [33], carboxylic acids [31], phosphate esters [31

• (Scheme 3c). It is important to note that the azole nucleophile preferentially adds to the carbon atom that can better stabilize a positive charge, as demonstrated by the regioselectivities observed with unsymmetrical alkynes. The failure of imidazole to participate in the iodo(III)azolation may be

• aryne carbon [36]. Conclusion In summary, we have reported a three-component N-vinylation reaction of azoles with alkynes and iodine(III) electrophile. The present reaction represents a rare example of the installation of stereodefined trisubstituted alkenyl groups into the azole core, encompassing

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• 1,2-BCH (+)-23 and ortho-benzene telmisartan has been reported by Walker and co-workers (Figure 4) [34]. They found that both the substituent distance d and scaffold carbon distance r of 1,2-BCH (+)-23 closely resemble the ones found in telmisartan. While this agreement extends to the substituent

• proposed as ortho-benzene isosteres (Figure 14) [48]. Comparison of selected exit vector parameters obtained from reported crystal structures [48][49] indicates high geometric agreement between the stellane and benzene cores. Substituent distance d, scaffold carbon distance r, and the substituent scaffold

• substituent distance d, scaffold carbon distance r, and substituent angle φ1 are remarkably similar to the aromatic counterpart. While the substituent–scaffold angles φ2 and φ3 show some deviation, the main difference is the 1,3-BCHs dihedral angle θ of 78° [34]. Recently, Walker and co-workers reported the

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• produced during the process of amine-based carbon dioxide capture technologies [13][14]. These linear nitramines from these reactions pose their own health and environmental consequences [13]. Therefore, strategies to remediate linear nitramines are needed. Compared to cyclic nitramines [1][2][15][16

• was attributed to a manganese peroxidase, however, the mechanism of degradation is unclear. Linear nitramines, produced by carbon capture, were shown to be biodegraded in soil and water [19]. Nitramines with hydroxy groups were best degraded in this study, including diethylnitramine, 2-methyl-2

• nitramine. An enzyme, N-nitroglycine lyase A (NnlA), from the bacterium Variovorax sp. strain JS1663 (Vs NnlA) was recently shown to degrade NNG. This strain was enriched from sludge from the Holston Army Ammunition Plant using selective growth media containing NNG as the only carbon and nitrogen source [20

Discovery and biosynthesis of bacterial drimane-type sesquiterpenoids from Streptomyces clavuligerus

• Dongxu Zhang,
• Wenyu Du,
• Xingming Pan,
• Xiaoxu Lin,
• Fang-Ru Li,
• Qingling Wang,
• Qian Yang,
• Hui-Min Xu and
• Liao-Bin Dong

Beilstein J. Org. Chem. 2024, 20, 815–822, doi:10.3762/bjoc.20.73

• Terpenoids, encompassing over 11,000 compounds (http://dnp.chemnbase.com), are the most diverse group of natural products found in nature [1]. All terpenoids are biosynthesized from C5 carbon units, which are sourced from the isoprenoid building blocks isopentenyl diphosphate (IPP) and dimethylallyl

• methyl groups at δH (0.83, 0.87, 0.98 and 1.77). Its 13C and DEPT NMR spectra showed 15 carbon resonances, including four methyl groups, four methylenes, four methines, and three quaternary carbon atoms. This information suggests that it may be a drimenol congener and the structure was further supported

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• discovery by Markovnikov in 1869, who formulated the "Markovnikov rule" as follows: "Experience shows that the halide adds to the least hydrogenated carbon, that is, to the one most susceptible to the influence of other carbon units” [1][2]. In the 1960s and 1970s, various research groups conducted detailed

• simultaneous mechanism [15][16][17][18][19]. 2) Radical hydrochlorinations: These reactions involve the in situ formation of a carbon-centered radical, which is then trapped by an appropriate chlorine source. 3) anti-Markovnikov products: This category describes a new field in hydrochlorination reactions

• hydrochlorination of 1-octene (63) required a combination of alumina and oxalyl chloride (Table 5, entry 3). It should be noted that this reaction needs to be carried out under a well-ventilated hood due to the evolution of toxic carbon monoxide. Kropp and co-workers observed that the remaining 2% of the alkene was

Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• (highlighted by purple arrows). A similar situation was observed in the expanded spectrum of 5b (Figure 6b, middle, measured in pyridine). This phenomenon suggests a symmetry break in the carbon cage moiety of the C60–peptide conjugate upon the addition of chiral peptide anchors to the C60 core. Together with

• –peptide conjugate 5a in D2O (above) and of the precursor monoadduct in CDCl3 (bottom) at 600 MHz. 13C NMR spectrum of C60–peptide conjugate 5a in D2O and of the precursor monoadduct in CDCl3 at 150 MHz (a) and expansion of the sp2 carbon region (b). The asterisks in (a) correspond to a TFA impurity

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• components are also present in actinomycetes, and a regulatory system for secondary metabolism has been reported [57]. For example, Świątek et al. proposed that Rok7B7, a transcriptional regulator, acts as the central control protein for carbon control in Streptomyces [58][59]. Rok7B7 also controls the

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• retinopathy [70][71][72][73][74][75][76][77][78][79][80]. Biosynthesis The biosynthetic pathways of crocins have recently been studied extensively. Crocin biosynthesis can be divided into three stages: 1) biosynthesis of lycopene (5) from simple carbon resources, 2) cleavage of lycopene (5), β-carotene (6

Substrate specificity of a ketosynthase domain involved in bacillaene biosynthesis

• Zhiyong Yin and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2024, 20, 734–740, doi:10.3762/bjoc.20.67

• , showing that the amino acid sequences of these KSs correlate with the structures of the processed PKS intermediates up to the β-carbon [20]. 13C NMR spectra of (R)-11 incubated with BaeJ-KS2 and BaeJ-KS2-C222A. A) Free 11 dissolved in incubation buffer; B) (R)-11 bound to BaeJ-KS2 after incubation and

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• tylactone hexaketides, such as NAC thioester and thiophenol ester 49, which serves as the precursor for downstream enzymatic assembly. Thiophenol ester 49 was accepted by the two terminal of tylosin PKS modules (TylGIV and TylGV) in vitro, which are responsible for the last four carbon atoms assembly and

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• would initially involve the addition of azide radicals to an alkene, generating a carbon-centered radical. Then, different trapping of this intermediate could be performed (Scheme 1B). First, C-centered radicals are known to recombine with metal-acetylides, in particular copper [27]. Reductive

• ]. On the other hand, the nature of the alkene might be limited as it would strongly influence the oxidation potential of the carbon radical and the stability of the resulting carbocation. Recently, we reported the first successful application of an RPC strategy for the azido-alkynylation of styrenes

• -centered radical by Ph-EBX (2) and not from a sluggish addition of azide radicals to the double bond. We attempted to solve this issue by using Ts-ABZ (3) in excess, which should increase the overall quantity of carbon radicals formed, doing so slightly improved the yield of 4a to 29% with no styrene

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• University. To stimulate siderophore production, H002 was grown in modified minimal medium containing casamino acids and glucose as nitrogen and carbon sources, respectively, in the presence of HP-20 resin. Upon cultivation for one week, the non-polar resin was collected and washed thoroughly with water to

• from 1. The 1H NMR spectrum showed additional olefinic proton signals at δH 5.35, as compared with that of 1. In line with this, two sp2 carbon signals at δC 130.6 and 131.0 were detected in the 13C NMR spectrum, demonstrating the presence of an olefin in 4. The comparative analysis of the MS/MS

Palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines

• Geng-Xin Liu,
• Xiao-Ting Jie,
• Ge-Jun Niu,
• Li-Sheng Yang,
• Xing-Lin Li,
• Jian Luo and
• Wen-Hao Hu

Beilstein J. Org. Chem. 2024, 20, 661–671, doi:10.3762/bjoc.20.59

• a highly emerging area of research and exhibit complementary reactivity to those well-developed carbene-mediated MCRs [30][31][32][33][34][35][36][37][38][39][40][41][42]. In the radical-mediated difunctionalization of alkenes, the carbon-centered radical species from a diazo compound can add to

• diverse alkenes followed by a diradical coupling or radical addition process to achieve the difunctionalization (Scheme 1b, middle) [32][33][34][35][36][37]. However, to the best of our knowledge, the methodology involving the addition of a carbon radical from a diazo compound onto the double bond of an

Enhanced reactivity of Li⁺@C₆₀ toward thermal [2 + 2] cycloaddition by encapsulated Li⁺ Lewis acid

• Hiroshi Ueno,
• Yu Yamazaki,
• Hiroshi Okada,
• Fuminori Misaizu,
• Ken Kokubo and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2024, 20, 653–660, doi:10.3762/bjoc.20.58

• reactants were optimized at the B3LYP/6-31G(d) level of theory. The calculated HOMO levels are summarized in Figure 1 along with the LUMO levels of Li+@C60 and empty C60 computed at the same level of theory. Among the computed substrates having a carbon–carbon unsaturated bond, thermal [2 + 2] cycloaddition

• , external standard), and carbon of the solvent for 13C (53.84 ppm, CD2Cl2). High-resolution matrix-assisted laser desorption ionization (HR-MALDI) mass spectra were obtained on a Bruker solariX 12T mass spectrometer with dithranol as a matrix. UV–vis absorption spectra were measured on a JASCO V-670 and a

Isolation and structure determination of a new analog of polycavernosides from marine Okeania sp. cyanobacterium

• Kairi Umeda,
• Naoaki Kurisawa,
• Ghulam Jeelani,
• Tomoyoshi Nozaki,
• Kiyotake Suenaga and
• Arihiro Iwasaki

Beilstein J. Org. Chem. 2024, 20, 645–652, doi:10.3762/bjoc.20.57

• )/δC 206.9 (C-9) connected C-11 and C-8 through a ketone carbonyl carbon at C-9 and hemiacetal carbon at C-10, revealing the 16-membered macrolide structure of 1. The HMBC, δH 4.27 (H-1’)/δC 85.3 (C-5), revealed that the disaccharide moiety was connected to C-5. Finally, considering the molecular

• Information File 1) [5]. The remaining relative configuration of 1 was determined by a comparison of the carbon chemical shifts between 1 and 5 in CDCl3 [5]. As shown in Table S1 (Supporting Information File 1), the two sets of data were in good agreement, indicating that the relative configurations of

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• polyketide moiety, contributing to structural diversification [9][10]. By contrast, in the biosynthesis of meroterpenoids derived from orsellinic acid and 5-methylorsellinic acid (5-MOA), the prenylation reaction typically occurs at the non-substituted carbon atom and thus preserves the aromaticity of the

Introduction of a human- and keyboard-friendly N-glycan nomenclature

• Friedrich Altmann,
• Johannes Helm,
• Martin Pabst and
• Johannes Stadlmann

Beilstein J. Org. Chem. 2024, 20, 607–620, doi:10.3762/bjoc.20.53

• oligomannosidic-type glycans, but this only makes sense if the true structure of a glycan is known, e.g., if glycans are analyzed by porous graphitic carbon chromatography [50]. Only the mannoses that occur in addition to those on the common core have to be explicitly defined and this is realized by their linkage

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• carbonyl carbon (δC 174.6). Its NMR profile is similar to brocaeloid C [24], with the distinction of an added succinimide substructure at N-15, where the ketone carbonyl carbon at C-16 is replaced by a hydroxy carbon. The isoprene group is consistent with that in compound 1. HMBC cross-peaks from H-10 to C

• sixteen-carbon fatty acid. Notably, two methylene carbons overlapped in the 13C NMR spectrum. The COSY correlations facilitated the determination of the carbon chain fragments from C-11 to C-16 and C-2 to C-10, despite two methylene signals overlapping. The carboxyl group's position at C-1 was confirmed

Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• to carbon materials [2][3]. The properties and characteristics of these linker molecules are keys not only to the purpose of protein immobilization, but also to the behavior of the entire biosensor system. In oscillator-based biosensors, further adsorption on the sensor, such as viruses using antigen

• sensor chips and specifically binds to the antibody. The antigen is then detected by observing the change in the vibrational frequency before and after the injection of the antigen. The immobilization of a protein using a PASE linker on carbon nanotube [1], graphite [4], and graphene [5] has been

• reported. The adsorption of PASE has been considered to mainly come from the pyrene fragment, which forms π–π stacking on these graphitic carbon materials [6][7][8]. The sensitivity of the oscillator-based sensor depends on the structure of the linker molecule. Therefore, understanding the adsorption

Entry to new spiroheterocycles via tandem Rh(II)-catalyzed O–H insertion/base-promoted cyclization involving diazoarylidene succinimides

• Alexander Yanovich,
• Anastasia Vepreva,
• Ksenia Malkova,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 561–569, doi:10.3762/bjoc.20.48

• consequence, the significantly greater nucleophilicity of the nearest α-carbon atom. When an attempt was made to generate an anion from compound 25 under the action of a stronger base (t-BuOK/THF, 0 °C) in order to effect spirocyclization, only the formation of a complex multicomponent mixture was observed

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• ) that is labile. By default, the complex is in a closed form with the functional units on each ligand facing each other due to the square planar geometry of the complex. By adding a first ancillary ligand (carbon monoxide, chloride,…) that strongly binds to the metal center, one weak binding site is

A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001

• Rattiya Janthanom,
• Yuta Kikuchi,
• Hiroki Kanto,
• Tomoyasu Hirose,
• Arisu Tahara,
• Takahiro Ishii,
• Arinthip Thamchaipenet and
• Yuki Inahashi

Beilstein J. Org. Chem. 2024, 20, 497–503, doi:10.3762/bjoc.20.44

• sp2 methines, one sp3 methine, one sp3 methylene, and one methyl group. The 13C NMR data showed the resonances of twelve carbons, which were classified into six olefinic carbons (including two oxygenated carbons: δC 151.0 and 145.2), three carbonyl carbons, one sp3 methine carbon, one sp3 methylene

• carbon, and one methyl carbon. A spin system H-6 (δH 6.85)/H-7 (δH 7.33) with an ortho-coupling constant (8.5 Hz) was observed using homonuclear correlation spectrometry (COSY). The heteronuclear multiple bond correlation (HMBC) cross-peaks from H-6 to C-2 (δC 112.4) and C-4 (δC 145.2), and from H-7 to C

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• involvement in proton transfer at the transition state [78]. In systems where protodemetalation is rate determining, a metal-carbon bonded intermediate is allegedly characterized, as in the case of a related palladium-catalyzed hydroamination [47], and a propargylamide cyclization [44]. In our studies, the

• cross-hatched spheres, and carbon and hydrogen atoms are represented by medium and small open spheres, respectively and all nonhydrogen atoms are labeled [43]. (c) 31P NMR spectrum (161.98 MHz, CDCl3). (a) kobs for reaction of urea 1a (0.05 M) in DCM with catalyst 5 and titrated CH3OH/CH3OD. Data for