Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• pathway, the bergamotene sesquiterpenoid (I) is presumed to be a key intermediate cyclized from farnesyl diphosphate (FPP) via nerolidyl diphosphate (NPP) followed by a bisabolyl cation [14]. Subsequent oxidation (bishydroxylation) catalyzed by some oxygenase such as P450 would afford the key intermediate

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• /SiO2 [75], ZnCl2/SiO2 [76], heteropoly-11-tungsto-1-vanadophosphoric acid, H4[PVV W11O40] (HPV) (20%) supported on natural clay (HPVAC-20) [77], V2O5/SiO2 [78], strongly acidic cation exchange resin (Seralite SRC-120) [79] or HCl/SiO2 [80]. Among all the protocols mentioned above, it is worth

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• . Radical intermediate 9 formed upon fragmentation of 25, adds to the styrene acceptor forming radical 26. Finally, a radical-polar crossover event between 26 and the IrIV complex regenerates the IrIII ground state while delivering cation 27 that is then trapped by the oxygen-nucleophile to form the

• radical-polar crossover affords cation 27 that delivers functionalized product 31 upon nucleophilic addition. The Doyle and Knowles groups reported the use of NHPI esters as radical precursors in the context of a radical redox annulation method [48] (Scheme 8A). This transformation occurs through an

• aromatic ring, forming intermediate 41, which was then oxidized to cation 42, thereby completing the photocatalytic cycle. The reaction proceeded by regioselective nucleophilic addition of H2O, accompanied by the loss of MeOH to deliver spirocycle 43. Notably, the dearomative spirocyclization of biaryl

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• and subsequent reverse Ni-NTA affinity chromatography resulted in significant co-purification of E. coli contaminants, necessitating an extra purification step, where cation exchange chromatography allowed us to obtain pure fractions of CMA16–291. Of note, this additional purification step was not

• (Val6 to Asp132) could be modelled, and unambiguous electron density permitted us to locate and model four cation binding sites (three in each structure) and one sugar binding site (Figure 4a,b and Figure S4, Supporting Information File 2). The complexed structures allowed us to shed light on the

• from the expression of CMA1 protein in CHO-S cells. Note the smeared band indicating the presence of glycosylation. (d) Recombinant expression of CMA1 in bacteria. SDS-PAGE gels of the His-tag affinity chromatography and cation exchange chromatography from the expression of CMA1 protein in E. coli BL21

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• phenoxide in PhOH, the PhOH molecule is included in the hydrogen bond network along with the tetrabutylammonium cation (Bu4N+) to form a large aggregate. The hydrogen bonding between the amide and phosphate base in the small aggregates was stronger than in the large aggregates, which significantly enhanced

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• is easily protonated, and its protic salt has been fully characterized as tetrafluoroborate 14H+BF4−. The 1H NMR spectrum of this salt confirmed the symmetrical structure of the heterocyclic cation with a chelated intramolecular [NHN]+ bond, whose proton in CD3CN solution resonates at 17.22 ppm

• comparison, in the protonated cation of the starting diazine 5 in CD3CN, the chemical shift of the “acidic” proton is observed at 18.02 ppm [15]. Next, we evaluated the pKa value of base 14 by a competitive method in acetonitrile (NMR transprotonation involving an equivalent amount of "proton sponge" 1 as a

• dynamically symmetric in solution), however, due to the noticeably larger internitrogen distance in cation 8H+, the H bond in it is significantly weakened, as evidenced by a lower degree of deshielding of the chelated NH proton (cf. δNH values; see also data for protonated 14) and a shorter counterion–NH

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• ][33][34][37][39][43][44][46]. During a study of a possible influence of remote acyl protective groups [23] on the sialylation outcome (which could become possible through participation in stabilization of glycosyl cation [24][47][48] in a conformation with all-axial substituents in the pyranose ring

• versus α:β = 13:1 for 2). One could speculate that a more nucleophilic carbonyl oxygen of the chloroacetyl group at O-9 in sialyl donor 2 might participate in a stabilization of the intermediate glycosyl cation from the α-side (as we discussed earlier [52][53]) diminishing the α/β ratio. Conversely, at

• putative participation in stabilization [52][53] of the glycosyl cation. More importantly, in our opinion, this result indicates the existence of unexpected difficulties in the determination of relative reactivities of glycosyl donors (vide infra). Discussion It is generally believed that the molecular

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• alternative mechanism, we envisionned a possible interconversion of 7 and 7’ through a [1,5]-sigmatropic rearrangement resulting in a hydrogen and cation shift towards 7’ (Scheme 4). To test this hypothesis, this rearrangement was computed at the DFT level. A cyclic transition state (TS) was found between

• reactions. Highly nucleophilic arenes like 1,3,5-trimethoxybenzene react easily under mild conditions and result in a stabilized benzylic cation in acidic conditions, allowing a second intramolecular Friedel–Crafts reaction involving the aryl substituent of the substrate. These reactions are favored by π

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• lifetime of 71 ps in toluene. Meanwhile, the absorption at 640 nm, corresponding to the ZnP radical cation, was not observed. The results obtained from Rehm–Weller’s equation [146] suggested that photoinduced electron transfer was thermodynamically permitted in 86. However, ultrafast energy transfer from

• , the emergence of the weak absorption band of the ZnP radical cation at 640 nm was hindered by the overwhelming absorption intensity of the residual porphyrin. The transient absorption spectra of 87 were obtained in benzonitrile solvent, which was expected to stabilize the CS state. Absorption

• corresponding to the ZnP radical cation was clearly observed with a lifetime of 2.3 μs. The occurrence of such a long-living CS state can be rationally associated with the Marcus-inverted-region [143] behavior of the charge-recombination process. For 88, which has no spacer between ZnP and TCBD, as opposed to

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• formed radical 7 can be oxidized by 2a or 4 giving a cation 8, which undergoes a deprotonation process and formation of the desired product. Conclusion In conclusion, we have developed a visible-light-promoted protocol for the synthesis of dihydropyrido[1,2-a]indolones bearing a trifluoromethyl group at

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• and reversible process named phase 1. We find that the barriers for the radical cation mechanism are significantly lower than those found for the neutral pathway. The peapod is mainly providing one-dimensional confinement for the reaction to take place in a more efficient way. Car–Parrinello

• the reaction either via singlet excitation or via radical cation formation (Scheme 1). Estimation of the activation barrier for the [2 + 2] cycloaddition when the nanotube acts as a sensitizer is 33.5 ± 6.8 kJ mol−1. This value agrees with computational predictions for the reaction via an excited

• can also be activated through the formation of C60+• radical cation [3][9]. This mechanistic proposal for phase 1, which to our knowledge has not yet been explored in detail inside a carbon nanotube, is analyzed here and compared to the non-activated C60 dimerization. Finally, some intermediates for

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• Tetrathiafulvalene (TTF, Figure 1) is a redox-active molecule that has been widely explored in materials chemistry and supramolecular chemistry [1][2][3][4][5][6][7][8]. TTF reversibly undergoes two sequential one-electron oxidations, generating first a radical cation (TTF+•) and subsequently a dication (TTF2

• rate: 0.1 V/s. All potentials are depicted against the Fc/Fc+ redox couple. Radical anion (left), dianion (middle), and radical cation (right) of compound 23; the radical anion has a 14πz-aromatic ring (highlighted in blue; only counting 2π-electrons of each triple bond, here defined as those in πz

• orbitals), the dianion has an additional 6π-aromatic cyclopentadienyl anion (highlighted in green), while the cation has a 6π-aromatic 1,3-dithiolium ring (highlighted in red). ORTEP plots (50% probability) and crystal packing of compounds a) 25, b) 26, and c) 29. The respective crystal packing of each

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• between P1 and C15 is slightly longer (1.824(2) Å in 2a; 1.828(3) in 2f) when compared to the P–CH2 distance of a tetra-n-butylphosphonium cation [45]. UV–vis spectroscopy All phosphonium phenolate compounds exhibit a bright yellow color in solution (see inset in Figure 3). Investigating the absorption

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• alkynes was studied in the ionic liquid 1-butyl-3-methylimidazolium tetrafluoroborate (BMIm-BF4) adding boron trifluoride diethyl etherate (BF3·Et2O) as catalyst. Different ionic liquids were used, varying the cation or the anion, in order to identify the best one, in terms of both efficiency and reduced

• electrogeneration of BF3, the aim of this work was to explore the hydration of alkynes using ILs as reaction medium and BF3 as catalyst. First of all, we investigated the behaviour of diphenylacetylene in BMIm-BF4 containing BF3·Et2O. Then we evaluated the same reaction in different ILs, modifying the cation or the

• ‒ hydrolysis in a 1:1 in volume IL/water solution kept at 45 °C for 24 h) [105]. It should be noted that the same treatment carried out on 1-methyl-3-octylimidazolium tetrafluoroborate (OMIm-BF4) evidenced a much higher extent of BF4‒ hydrolysis. This is probably due to the weaker interaction between cation

Beyond n-dopants for organic semiconductors: use of bibenzo[d]imidazoles in UV-promoted dehalogenation reactions of organic halides

• Kan Tang,
• Megan R. Brown,
• Chad Risko,
• Melissa K. Gish,
• Garry Rumbles,
• Phuc H. Pham,
• Oana R. Luca,
• Stephen Barlow and
• Seth R. Marder

Beilstein J. Org. Chem. 2023, 19, 1912–1922, doi:10.3762/bjoc.19.142

• the monomeric cation N-DMBI+ (Supporting Information File 1, Figure S15). Thus, the overall reaction is consistent with: Scope of reaction (Y-DMBI)2 with other benzyl, alkyl, and aryl halides Table 2 summarizes the conversions and product yields for the reactions of (N-DMBI)2 or (Cyc-DMBI)2 with

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• ], followed by SWCNTs and MWCNTs two years later [13]. Particularly MWCNTs have the potential to couple anion–π and cation–π catalysis with electric-field-assisted catalysis [14]. While anion–π (and cation–π [15][16]) catalysis, compared to other unorthodox interactions, has been less impactful than expected

• available so far on anion–π catalysis on carbon allotropes. Review Anion–π catalysis on fullerenes The use of fullerenes in catalysis is surprisingly underdeveloped [45][46][47][48][49][50][51]. Anion–π and cation–π interactions on fullerenes attract similarly little attention until today [52][53][54][55

• –16 was as in the amide series from 8 and thus supported entropic contributions to anion–π catalysis. Steric increase of the secondary amide in 17 impeded anion–π catalysis, presumably because the catalytic π surface next to the ammonium cation became inaccessible for anions paired with the tethered

Recent advancements in iodide/phosphine-mediated photoredox radical reactions

• Tinglan Liu,
• Yu Zhou,
• Junhong Tang and
• Chengming Wang

Beilstein J. Org. Chem. 2023, 19, 1785–1803, doi:10.3762/bjoc.19.131

• a wide range of transformations [7][8]. Moreover, they proposed a plausible mechanism for the aforementioned conversions (Scheme 2). Initially, an NaI/PPh3 complex I was formed through a cation–π interaction. Subsequently, the combination of complex I with N-(cyclohexanecarbonyloxy)phthalimide

Selectivity control towards CO versus H₂ for photo-driven CO₂ reduction with a novel Co(II) catalyst

• Lisa-Lou Gracia,
• Philip Henkel,
• Olaf Fuhr and
• Claudia Bizzarri

Beilstein J. Org. Chem. 2023, 19, 1766–1775, doi:10.3762/bjoc.19.129

• (helping in the deprotonation of the radical cation BIH•+ formed after the reductive quenching of the PS), but also can actively assist the catalysis, by capturing CO2 [50][51][52]. On the other hand, having three hydroxy groups, TEOA is also considered a proton donor and the formation of metal hydrides is

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• and 1,3-dimethyl substituents in pseudo-equatorial positions and the reactive hydridic 2-H-atom pesudo-axial. The cation structures (Figure 5) give some insight into the variety of dopant-ion shapes and sizes that can be afforded by these types of dopants. The angle between the imidazolium ring and

• -membered rather than six-membered aromatic ring, the structure of 1i+PF6− contains a somewhat more planar cation (31.9°). Finally, we note that the new structures reported here mean that the 1b and 1h systems join the 1c (Y = Fc; R = R' = H) system [50] as families for which 1+, 1H, and 12 members are all

• since 4-(dimethylamino)phenyl and metallocenyl groups are π-donors, unlike cyclohexyl, and thus might be expected to be better able to stabilize an adjacent cation. However, aryl and metallocenyl substituents also stabilize adjacent radicals more effectively than alkyl groups and this effect is

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• cation and crown ether pocket, dimerisation of the crown porphyrin molecule would occur. The dimerisation led to interesting changes in the visible, NMR, ESR, and emission spectral features. Further developments by Camilleri, Gunter, Boitrel, and Osuka focused on the exploitation of meso-crowned

• -capped calix[4]pyrrole cavitand 4. The heteroditopic receptor had multiple binding sites, proving efficient in encapsulating a CsF ion pair. The calix[4]arene-crown-6-capped pocket was exploited as an excellent binding site for the Cs+ cation, whereas the calix[4]pyrrole was aligned to trap the fluoride

• separation between the cation and anion. Sessler and co-workers introduced a similar ion-pair receptor, in which the calix[4]arene-strapped calix[4]pyrrole 5 demonstrated an additional binding mode of CsF (Figure 5). The binding constant Ka = 1.3·104 M−1 in CHCl3/MeOH 9:1 was reported [101][102]. This

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• necessary. MF-ROMP, also termed photo-ROMP, is a novel technique to polymerize cyclic olefins. It begins with the reductive quenching of an photoexcited photocatalyst (PC) at an enol ether initiator to produce a radical cation carrier [90]. Then, the carrier undergoes cyclic addition with a cyclic olefin

• monomer to generate a cyclobutene radical cation intermediate. The thermodynamically instable intermediate subsequently forms the propagating radical cation species via a ring-opening process. The reduced PC•− terminates the catalytic loop by reducing the propagating species to provide a polymer chain

Unraveling the role of prenyl side-chain interactions in stabilizing the secondary carbocation in the biosynthesis of variexenol B

• Moe Nakano,
• Rintaro Gemma and
• Hajime Sato

Beilstein J. Org. Chem. 2023, 19, 1503–1510, doi:10.3762/bjoc.19.107

• possibility of through-space interactions with prenyl side chains using DFT calculations. Our calculations show that (i) the unstable secondary carbocation is stabilized by the cation–π interaction from prenyl side chains, thereby lowering the activation energy, (ii) the four-membered ring formation is

• completed through bridging from the exomethylene group, and (iii) the annulation from the exomethylene group proceeds in a barrier-free manner. Keywords: biosynthesis; carbocation; cation–π interaction; DFT; terpene; Introduction Terpene/terpenoids are most abundant natural products in nature, more than

• as the C–H–π interaction between the carbocation intermediate and the Phe residue of terpene cyclase in the biosynthesis of sesterfisherol [21], and the intricated rearrangement reaction mechanism promoted by the equilibrium state of the homoallyl cation and the cyclopropylcarbinyl cation in the

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• sulfur atom to Fe3+ to generate Fe2+ and radical cation I. Subsequent cleavage of the N–S bond led to cation II and radical III. Interaction of III with Fe2+ regenerated the Fe3+ species and IV. At the same time, electrophilic addition of II to alkene 9 yielded intermediate V, which was subjected to the

• (PIDA) and meta-chloroperbenzoic acid (m-CPBA) toward 3-sulfinylated and 3-sulfonylated product, respectively, were performed in this work. A plausible mechanism involves the treatment of 1 with BF3·Et2O toward cation I, which reacted with the C–C triple bond in 12 to give sulfonium intermediate II

• or 14, caused polarization of the S–N bond and produced an electrophilic intermediate I. Through the nucleophilic attack of the alkyne on I, cation II was generated, leaving Al-coordinated phthalimide/succinimide III. Finally, 4-endo-trig spirocyclization of II rendered the unstable intermediate IV

Cyclization of 1-aryl-4,4,4-trichlorobut-2-en-1-ones into 3-trichloromethylindan-1-ones in triflic acid

• Vladislav A. Sokolov,
• Andrei A. Golushko,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2023, 19, 1460–1470, doi:10.3762/bjoc.19.105

• delocalization of the positive charge from the carbonyl group to the aromatic ring. It should be mentioned that cation Bm was generated by two ways in TfOH: either directly by protonation of enone 2m or from hydroxy ketone 1m. The latter was found to undergo fast dehydration into enone 2m in TfOH at room

• analogously to cation Ba. The cyclization of dication Aa into indanone 3a is very favorable (ΔG298 = −101.3 kJ/mol). However, the formation of both enones 2 and indanones 3 from hydroxy ketones 1 is observed in TfOH (Table 1). We assume that, at first, hydroxy ketones 1 undergo dehydration into enones 2

• C1 (0.60 e). This carbon atom gives 14.9% contribution to the LUMO. Contrary to that, the carbon C3 bears no positive charge (−0.13 e) and contributes 12.1% to the LUMO. The intramolecular cyclization of cation Ba takes place between the atom C3 and the ortho-carbons of the phenyl ring. Thus

Functional characterisation of twelve terpene synthases from actinobacteria

• Anuj K. Chhalodia,
• Houchao Xu,
• Georges B. Tabekoueng,
• Binbin Gu,
• Kizerbo A. Taizoumbe,
• Lukas Lauterbach and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1386–1398, doi:10.3762/bjoc.19.100

• 26 can be well understood from the cyclisation mechanism towards 23 (Scheme 1B). After substrate ionisation to A a 1,10-cyclisation leads to the (E,E)-germacradienyl cation (B) that can either be deprotonated to 24 or captured with water to yield 26. Both compounds are important neutral intermediates