Competitive cyclization of ethyl trifluoroacetoacetate and methyl ketones with 1,3-diamino-2-propanol into hydrogenated oxazolo- and pyrimido-condensed pyridones

• Svetlana O. Kushch,
• Marina V. Goryaeva,
• Yanina V. Burgart,
• Marina A. Ezhikova,
• Mikhail I. Kodess,
• Pavel A. Slepukhin,
• Alexandrina S. Volobueva,
• Vladimir V. Zarubaev and
• Victor I. Saloutin

Beilstein J. Org. Chem. 2025, 21, 2716–2729, doi:10.3762/bjoc.21.209

• , causes the formation of two to four diastereomers, the structure of which has been determined with 1H, 19F, 13C, 2D 1H-13C HSQC/HMBC, 1H-1H COSY/NOESY NMR and X-ray diffraction analysis. Keywords: condensed pyridones; 1,3-diamino-2-propanol; ethyl 4,4,4-trifluoroacetoacetate; methyl ketones; three

• three nucleophilic centers in 1,3-diaminopropan-2-ol (3), and because there is a need to increase diastereoselectivity of the cyclization process. Table 1 presents the optimization steps for the reaction conditions at various solvents and temperature. The reaction course was monitored by TLC and 19F NMR

• octahydropyrido[1,2-a]pyrimidinones 4a–d and hexahydrooxazolo[3,2-a]pyridones 5a–c was determined by IR, 1H, 19F, 13C NMR spectroscopy, two-dimensional NMR experiments, and X-ray diffraction analysis (XRD). The IR spectra of octahydropyrido[1,2-a]pyrimidinones 4a–d are characterized by reduced vibrational

Tandem hydrothiocyanation/cyclization of CF₃-iminopropargyl alcohols with NaSCN in the presence of AcOH

• Ruslan S. Shulgin,
• Ol’ga G. Volostnykh,
• Anton V. Stepanov,
• Igor’ A. Ushakov,
• Alexander V. Vashchenko and
• Olesya A. Shemyakina

Beilstein J. Org. Chem. 2025, 21, 2694–2702, doi:10.3762/bjoc.21.207

• formation and ratio of the products in contrast to the substituents in the imine fragment. NMR monitoring of reactions (1a/NaSCN/AcOH or 1g/NaSCN/AcOH in MeCN) did not allow to detect any intermediates even when the temperature was lowered to 0 °C. In the 1H and 19F NMR spectra the signals of products 2a

• and 3a appeared immediately upon mixing the starting reagents (Figure 1a and b). This indicated that the cyclization occurred almost immediately. Moreover, in the NMR spectra of the 1g/NaSCN/AcOH reaction mixture in MeCN we detected signals assigned to isothiozolium salt 2g (1H NMR: δ 8.30 s (CH

• ), 5.56 s (CH2) ppm, 19F NMR: δ 60.3 ppm), that disappeared by the end of the reaction (Figure 1c and d). Probably, the salts 2f,g are unstable and decompose under the reaction conditions. The formation of products 2 and 3 can be explained by different directions of cyclization of the primary adduct of

Synthesis of new tetra- and pentacyclic, methylenedioxy- and ethylenedioxy-substituted derivatives of the dibenzo[c,f][1,2]thiazepine ring system

• Gábor Berecz,
• András Dancsó,
• Mária Tóthné Lauritz,
• Loránd Kiss,
• Gyula Simig and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2645–2656, doi:10.3762/bjoc.21.205

• standard open 40 μL aluminum pan under 50 mL/min nitrogen atmosphere. IR spectra were obtained on a Bruker ALPHA FT-IR spectrometer in KBr pellets or in neat. NMR spectra were recorded at 295 K on a Bruker Avance III HD 600 (600 and 150 MHz for 1H and 13C NMR spectra, respectively) spectrometer equipped

• with a Prodigy cryo-probehead or a Varian Unity Inova 500 (500 and 125 MHz for 1H and 13C NMR spectra, respectively), or a Varian Unity Inova 400 (400 and 100 MHz for 1H and 13C NMR spectra, respectively), or a Varian Gemini 200 (200 and 50 MHz for 1H and 13C NMR spectra, respectively) spectrometer

• was used as the solvent and tetramethylsilane (TMS) as the internal standard. Chemical shifts (δ) and coupling constants (J) are given in ppm and in Hz, respectively. Coupling constants reported in the 1H NMR spectra are H–H couplings unless otherwise stated (J ≡ JH–H). Three-bond H–H couplings (3J

Chemoenzymatic synthesis of the cardenolide rhodexin A and its aglycone sarmentogenin

• Fuzhen Song,
• Mengmeng Zheng,
• Dongkai Wang,
• Xudong Qu and
• Qianghui Zhou

Beilstein J. Org. Chem. 2025, 21, 2637–2644, doi:10.3762/bjoc.21.204

• reduction by Li–NH3(l) was accomplished in just 3 minutes to afford rhodexin A in 60% isolated yield. The synthetic sample exhibited identical NMR spectroscopic data to the literature precedent [20], which confirmed the completion of the chemoenzymatic synthesis of rhodexin A in 9 steps from 17

Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

• Luan A. Martinho,
• Victor H. J. G. Praciano,
• Guilherme D. R. Matos,
• Claudia C. Gatto and
• Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

• compounds 3n and 4n was carried out using torsion angle analysis and 13C NMR chemical shift calculations to evaluate the absence of expected signals in the NMR spectra of these compounds. Their photophysical properties were also assessed, confirming a preference for a fluorescence mechanism via an ICT

• efficient synthesis of eight novel imidazo[1,2-a]pyridine–thiazolidinone hybrids in high yields (up to 99%). A spectroscopic analysis of selected compounds was carried out, including torsion angle evaluation and 13C NMR chemical shift calculations, justifying the absence of expected signals in some cases

• and 4n During the characterization of the compounds obtained in our study to determine the reaction scope, an anomaly was observed in the NMR spectra of products 3n and 4n derived from 4-diethylaminobenzaldehyde (see Supporting Information File 1). The spectra were acquired at 600 MHz for 1H NMR (320

Efficient solid-phase synthesis and structural characterization of segetalins A–H, J and K

• Liangyu Liu,
• Wanqiu Lu,
• Quanping Guo and
• Zhaoqing Xu

Beilstein J. Org. Chem. 2025, 21, 2612–2617, doi:10.3762/bjoc.21.202

• purification, all cyclopeptides were obtained in 45–70% isolated yields. Structural identities were confirmed by HRESIMS, NMR, and HPLC (>95% purity). Circular dichroism (CD) spectroscopy revealed distinct secondary structures, including β-sheets (1, 2, 3, 4, 7, 8, 10) and α-helical elements (5, 6). This

• electrospray ionization mass spectrometry (HRESIMS) data for all compounds matched the calculated exact masses for their respective molecular formulas. NMR spectroscopic analysis in appropriate deuterated solvents (e.g., DMSO-d6, D2O) fully corroborated the amino acid sequence and cyclic connectivity

• reagent for the challenging head-to-tail macrocyclization step under moderate dilution (10−3 M). This protocol afforded the target cyclic peptides in practical isolated yields (45–70%) and high purity. Comprehensive structural characterization by HRESIMS, NMR, and HPLC confirmed the identity and high

Silica gel with covalently attached bambusuril macrocycle for dicyanoaurate sorption from water

• Michaela Šusterová and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2025, 21, 2604–2611, doi:10.3762/bjoc.21.201

• phosphate buffer (pH 7.1) was chosen to test the materials’ stability in an aqueous environment. 1H NMR measurements showed that neither material released BU into organic solvents in the absence of anions. This was unexpected for SG-BnBU, since BnBU is readily soluble in chloroform and dichloromethane and

• presence of salt showing it is suitable for applications in an aqueous environment. SG-BU1 proved to be stable in chloroform, dichloromethane, and methanol even after addition of TBACl or NaCl, respectively. We did not detect any release of BU1 from SG-BU1 in aqueous phosphate buffer by NMR, but we

• carried out in nitrogen atmosphere. The dicyanoaurate concentration in solution was determined according to UV–vis spectra recorded with a CARY 60 spectrophotometer (Agilent Technologies). NMR spectra were recorded on a Bruker Avance III 300 spectrometer (300.15 Hz, 298.15 K). Preparation of SG-NHCO-BU1

Ni-promoted reductive cyclization cascade enables a total synthesis of (+)-aglacin B

• Si-Chen Yao,
• Jing-Si Cao,
• Jian Xiao,
• Ya-Wen Wang and
• Yu Peng

Beilstein J. Org. Chem. 2025, 21, 2548–2552, doi:10.3762/bjoc.21.197

• and Et3SiH as the hydrogen source [22], affording this natural product in 58% isolated yield. NMR data of the synthetic sample were found to be in agreement with those of previous literature (Tables S1 and S2, Supporting Information File 1). Moreover, the newly synthesized (+)-aglacin B (2) formed

• structures of aglacins A, B, C, and E. Retrosynthetic analysis of (+)-aglacin B (2). Synthesis of cyclization precursor 5. Synthesis of (+)-aglacin B (2). Supporting Information Supporting Information File 16: Experimental procedures, characterization data, and copies of 1H/13C NMR spectra

• . Acknowledgements We thank the Analytical and Testing Center of Southwest Jiaotong University for the NMR test. Funding The National Natural Science Foundation of China (Nos. 22071200 and 22471224).

Rapid access to the core of malayamycin A by intramolecular dipolar cycloaddition

• Yilin Liu,
• Yuchen Yang,
• Chen Yang,
• Sha-Hua Huang,
• Jian Jin and
• Ran Hong

Beilstein J. Org. Chem. 2025, 21, 2542–2547, doi:10.3762/bjoc.21.196

• smoothly to deliver the aldehyde which was immediately subjected to the condensation reaction with benzylhydroxylamine. The corresponding nitrone 10 then underwent an intramolecular cycloaddition. Adduct 11 was isolated as the major product in 42% yield for 2 steps. Comprehensive NMR analysis revealed the

• 19 was moderate because the anomeric carbon at C7 is associated with an acid-sensitive acetonide group. The structural determination of the major product 19a was accomplished by comprehensive NMR spectroscopy and further unambiguously confirmed by X-ray analysis (see Supporting Information File 1 for

Synthesis and characterization of a isothiouronium-calix[4]arene derivative: self-assembly and anticancer activity

• Giuseppe Granata,
• Loredana Ferreri,
• Claudia Giovanna Leotta,
• Giovanni Mario Pitari and
• Grazia Maria Letizia Consoli

Beilstein J. Org. Chem. 2025, 21, 2535–2541, doi:10.3762/bjoc.21.195

• groups by sodium borohydride and then converted to chloromethyl groups by treatment with thionyl chloride, to give compound 2. The reaction of compound 2 with thiourea in THF gave compound 3 as a white solid in 96% yield. Compound 3 was characterized by 1H and 13C NMR in DMSO-d6 as a solvent (Figure 1

• ). The proton signals of the NH₂ and CH₂S groups of the isothiouronium substituents were clearly observed at 9.04 ppm and 4.23 ppm, respectively. Additionally, the carbon signal of the CH₂S group appeared at 169.3 ppm. The NMR signals, consistent with a fully symmetric structure, evidenced the exhaustive

• precipitate was recovered by filtration and washed several times with ethyl ether, to give pure compound 3 (118 mg, 96% yield). Characterization of compound 3: NMR spectra were acquired on a Bruker Avance 400TM spectrometer. Chemical shifts (δ, ppm) are reported referring to the residual peak of the solvent

Pentacyclic aromatic heterocycles from Pd-catalyzed annulation of 1,5-diaryl-1,2,3-triazoles

• Kaylen D. Lathrum,
• Emily M. Hanneken,
• Katelyn R. Grzelak and
• James T. Fletcher

Beilstein J. Org. Chem. 2025, 21, 2524–2534, doi:10.3762/bjoc.21.194

• -connected ortho-bromobenzene subunit analogs failed under microwave irradiation but were successful using conventional thermal heating in yields of 31–65%. The expanded nature of the aromatic ring system following annulation was reflected by the downfield shifting of aromatic 1H NMR signals and the red

• shape differences by allowing such subunits to rotate out of coplanarity due to steric strain, diminishing conjugation between subunits. Formation of pentacyclic ring systems via annulation led to several expected spectroscopic signatures indicating the formation of an expanded aromatic π-system. 1H NMR

• the NMR timescale. These trends were observed similarly for the other analogs of this study (see Supporting Information File 1). Optoelectronic properties of each annulated product and its respective control compound were examined via UV–visible absorption and emission spectroscopy. Figure 6 shows the

Isoorotamide-based peptide nucleic acid nucleobases with extended linkers aimed at distal base recognition of adenosine in double helical RNA

• Grant D. Walby,
• Brandon R. Tessier,
• Tristan L. Mabee,
• Jennah M. Hoke,
• Hallie M. Bleam,
• Angelina Giglio-Tos,
• Emily E. Harding,
• Vladislavs Baskevics,
• Martins Katkevics,
• Eriks Rozners and
• James A. MacKay

Beilstein J. Org. Chem. 2025, 21, 2513–2523, doi:10.3762/bjoc.21.193

• UV melting and ITC, Db2 showed especially poor affinity for the U–A base pair in HRP1. To help explain experimental binding results, we turned to computational molecular dynamics modeling using HRP1 and PNA1–3 as a model based on the PNA–dhRNA triplex provided by previous NMR studies [41] (for

Effect of a photoswitchable rotaxane on membrane permeabilization across lipid compositions

• Udyogi N. K. Conthagamage,
• Lilia Lopez,
• Zuliah A. Abdulsalam and
• Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2498–2512, doi:10.3762/bjoc.21.192

• the compounds, while chloroform was used for cholesterol and lipid stock solutions. 1H NMR spectra were recorded using Bruker AV III 400 and Bruker AV III 500 spectrometers. 13C NMR was conducted on a Bruker AV III 500 spectrometer. All chemical shifts (δ) are reported in ppm, referencing residual non

Assembly strategy for thieno[3,2-b]thiophenes via a disulfide intermediate derived from 3-nitrothiophene-2,5-dicarboxylate

• Roman A. Irgashev

Beilstein J. Org. Chem. 2025, 21, 2489–2497, doi:10.3762/bjoc.21.191

• thiophene, promoting further study of these structures and reaction mechanism. 1H NMR spectroscopy of the obtained mixture provided the first key information about its nature, namely the presence of two major products 2 and 3, both of which showed three characteristic singlets with signal integration 1:3:3

• -nucleophiles to form sulfide 2 and disulfide 3. Optimization of the reaction conditions for the reduction–alkylation of disulfide 3. Supporting Information Supporting Information File 12: Full experimental details, characterization data, copies of NMR spectra and HRMS for all new compounds. Acknowledgements

Palladium-catalyzed regioselective C1-selective nitration of carbazoles

• Vikash Kumar,
• Jyothis Dharaniyedath,
• Aiswarya T P,
• Sk Ariyan,
• Chitrothu Venkatesh and
• Parthasarathy Gandeepan

Beilstein J. Org. Chem. 2025, 21, 2479–2488, doi:10.3762/bjoc.21.190

• thoroughly characterized by 1H and 13C NMR spectroscopy, HRMS, and single-crystal X-ray diffraction analysis (Figure 1). A range of solvents was subsequently screened; however, none provided an improvement over 1,4-dioxane for this transformation (Table 1, entries 2 and 3). In addition to AgNO3, other silver

• of our method. Key mechanistic studies. Optimization studies.a Supporting Information Supporting Information File 9: Experiment details, characterization data, copy of NMR spectra of synthesized compounds, and single-crystal X-ray diffraction data. Supporting Information File 10: CIF file for 2a

Synthesis of the tetracyclic skeleton of Aspidosperma alkaloids via PET-initiated cationic radical-derived interrupted [2 + 2]/retro-Mannich reaction

• Ru-Dong Liu,
• Jian-Yu Long,
• Zhi-Lin Song,
• Zhen Yang and
• Zhong-Chao Zhang

Beilstein J. Org. Chem. 2025, 21, 2470–2478, doi:10.3762/bjoc.21.189

• along IRC path. e) Spin-density analyses of R-24 and F-10 (isovalue = 0.004). f) NBO analyses of the selected transient structures (isovalue = 0.04). Substrate scope. Conditions screening.a Supporting Information Supporting Information File 6: Experimental procedures, characterization data, NMR spectra

The intramolecular stabilizing effects of O-benzoyl substituents as a driving force of the acid-promoted pyranoside-into-furanoside rearrangement

• Alexey G. Gerbst,
• Sofya P. Nikogosova,
• Darya A. Rastrepaeva,
• Dmitry A. Argunov,
• Vadim B. Krylov and
• Nikolay E. Nifantiev

Beilstein J. Org. Chem. 2025, 21, 2456–2464, doi:10.3762/bjoc.21.187

• determined by 1H NMR spectroscopy. (A) Conformers arising during the rotation around the C5–C6 bond in pyranosides. (B) Furanoside ring conformers of monosaccharide 2 in the pseudorotation diagram. The dashed colored circles denote the initial conformations taken for optimization. Solid colored circles

The high potential of methyl laurate as a recyclable competitor to conventional toxic solvents in [3 + 2] cycloaddition reactions

• Ayhan Yıldırım and
• Mustafa Göker

Beilstein J. Org. Chem. 2025, 21, 2389–2415, doi:10.3762/bjoc.21.184

• transition state (Scheme 2). Meanwhile, the diastereomeric ratio of interest can be determined by integrating the 1H NMR spectra, in particular by selecting the appropriate signal pairs (one from each diastereomer) belonging to the respective cycloaddition product. An example of these selected protons (trans

• in Table 1, entry 9. As illustrated in Table 5, the product yields obtained from the reactions are presented alongside the observed cis/trans diastereoisomer ratios in the presence of the respective catalysts. However, upon examination of the 1H NMR spectra of compound 3a synthesized in the presence

• performed using silica gel (60 F254, Merck, Darmstadt, Germany) plates. Melting points were recorded using a Büchi melting point B-540 apparatus (Büchi Labortechnik AG in Flawil, Switzerland). The IR spectra were measured by Spectrum Two FT-IR spectrometer (PerkinElmer, Massachusetts, USA). The NMR spectra

An Fe(II)-catalyzed synthesis of spiro[indoline-3,2'-pyrrolidine] derivatives

• Elizaveta V. Gradova,
• Nikita A. Ozhegov,
• Roman O. Shcherbakov,
• Alexander G. Tkachenko,
• Larisa Y. Nesterova,
• Elena Y. Mendogralo and
• Maxim G. Uchuskin

Beilstein J. Org. Chem. 2025, 21, 2383–2388, doi:10.3762/bjoc.21.183

• mmol scale experiment. The scope of the Fe-catalyzed spirocyclization. aIsolated yield of the 4.2 mmol scale experiment. The proposed mechanism of product 4 formation. Supporting Information Supporting Information File 2: General reaction procedures, compound characterization data, and copies of NMR

Synthetic study toward vibralactone

• Liang Shi,
• Jiayi Song,
• Yiqing Li,
• Jia-Chen Li,
• Shuqi Li,
• Li Ren,
• Zhi-Yun Liu and
• Hong-Dong Hao

Beilstein J. Org. Chem. 2025, 21, 2376–2382, doi:10.3762/bjoc.21.182

• . Supporting Information Supporting Information File 34: Characterization data and 1H NMR, 13C NMR spectra of the compounds. Acknowledgements The authors sincerely acknowledge all of the anonymous reviewers for their valuable comments and suggestions. Funding We are grateful for financial support from the Qin

Conformational effects on iodide binding: a comparative study of flexible and rigid carbazole macrocyclic analogs

• Guang-Wei Zhang,
• Yong Zhang,
• Le Shi,
• Chuang Gao,
• Hong-Yu Li and
• Lei Xue

Beilstein J. Org. Chem. 2025, 21, 2369–2375, doi:10.3762/bjoc.21.181

• ) and WDG (rigid fluorene backbone), were synthesized via Friedel–Crafts reactions. Their iodide (I−) recognition properties were systematically explored using 1H NMR, UV–vis absorption, and fluorescence spectroscopy. Quantitative analysis via the Benesi–Hildebrand equation and nonlinear fitting

• rotationally restricted, all its accessible conformations constitute a subset of PBG's conformations. The binding constants and conformational change mechanisms of the two analogs were quantitatively evaluated by proton nuclear magnetic resonance spectroscopy (1H NMR), ultraviolet–visible absorption

• . Experimental PBG (CCDC Number: 2070280) and WDG were synthesized from phenyl- and fluorenyl-substituted precursors, respectively, via Friedel–Crafts alkylation (Scheme 1) according to our previous work [22]. Structural characterization was performed using 1H NMR (Figures S1 and S2) and mass spectrometry

Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications

• Jullyane Emi Matsushima,
• Khushbu,
• Zuliah Abdulsalam,
• Udyogi Navodya Kulathilaka Conthagamage and
• Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2345–2366, doi:10.3762/bjoc.21.179

• reported the first [3]rotaxane with three azobenzene units in the axle and two α-cyclodextrins as the macrocycle. The rotaxane was obtained as a single stereoisomer, where the two narrow rings of the cyclodextrin point to each other. Although no photoswitching studies were conducted, 1H NMR results showed

Insoluble methylene-bridged glycoluril dimers as sequestrants for dyes

• Suvenika Perera,
• Peter Y. Zavalij and
• Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 2302–2314, doi:10.3762/bjoc.21.176

• but insoluble in CHCl3, CH2Cl2, methanol, acetone, acetonitrile, and hexane; G2W4: soluble in CHCl3, CH2Cl2, acetonitrile, DMSO, and TFA but insoluble in methanol, acetone, and hexane). The new hosts G2W1–G2W4 were fully characterized spectroscopically (1H and 13C NMR, IR, MS) and the data is in

• accord with the depicted C2v-symmetric structures. Figure 3 shows the 1H NMR spectra recorded for G2W1–G2W4 in DMSO-d6 at 400 MHz. As expected, all four hosts display two singlets for the equatorial CH3 groups (a, b), two pairs of doublets for the diastereotopic CH2 groups (c,c’ and d,d’) in the expected

• deshielding effect of the lone pairs on the adjacent OCH3 group and the neighboring aromatic ring. Similarly, the number of resonances in the 13C NMR recorded for G2W1 (19 observed, 19 expected), G2W2 (17 observed, 17 expected), G2W3 (13 observed, 13 expected), G2W4 (11 observed, 11 expected) are also

Halogenated butyrolactones from the biomass-derived synthon levoglucosenone

• Johannes Puschnig,
• Martyn Jevric and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2025, 21, 2297–2301, doi:10.3762/bjoc.21.175

• fluorination attempts. Maintaining some residual solvent allowed for the characterization of compound 13 by NMR spectroscopy. Stereochemical assignment in 13 was based on a large trans-axial coupling constant JH2exo-H3 = 10.6 Hz in the 1H NMR spectrum and interactions between H3endo and H7endo on the

• oxymethylene bridge in the 2D NOESY NMR spectrum. Given the instability of fluoro-ketone 13, a one-pot procedure was developed in which the reaction mixture containing 13 was subjected to the Baeyer–Villiger oxidation with H2O2 giving the fluorinated and stable lactone 14, which is the expected kinetic product

Research towards selective inhibition of the CLK3 kinase

• Vinay Kumar Singh,
• Frédéric Justaud,
• Dabbugoddu Brahmaiah,
• Nangunoori Sampath Kumar,
• Blandine Baratte,
• Thomas Robert,
• Stéphane Bach,
• Chada Raji Reddy,
• Nicolas Levoin and
• René L. Grée

Beilstein J. Org. Chem. 2025, 21, 2250–2259, doi:10.3762/bjoc.21.172

• Supporting Information Supporting Information File 26: Detailed experimental procedures and spectral data, kinase inhibition studies, molecular modelling studies, analysis of dose-dependent effect of VS-77 on the kinase activity of Mm_CLKs and copies of the 1H and 13C NMR spectra. Acknowledgements We thank