Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• conversion in situ, triggered by thermal activation, photoirradiation or redox control. Beside well-established reactions involving the elimination of carbon-based small molecules, i.e., retro-Diels–Alder and decarbonylation processes, the late-stage extrusion of chalcogen fragments has emerged as a highly

• sulfide (Na2S). Since the nature of the imide substituents is very important to control the solid state molecular arrangement, the same authors revised their initial synthetic route to allow for a late stage introduction of the imide groups, thus leading to the preparation of a series of variously

• , since previously reported bare and aryl-substituted dinaphthooxepines exhibited reversible reduction [67]. In summary, owing to the heteroatom-dependent behavior of heteropines, it is possible to control the structure of the target compound: on the one hand, thermally stable chalcogen-doped π-CPCs with

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• appealing due to the possibility of performing the switching within the biooptical transparency window (650–900 nm) [87]. Additionally, significant structural differences (180° flip) between the E- and Z-isomers of the compounds provide a prerequisite of light-controllable geometry control in biomolecular

• thermal half-lives of the photoisomers range from seconds to days. Detailed photophysical and photochemical studies have provided insight into the photoswitching mechanisms of indigo derivatives and enabled control of their photochemical properties through targeted design of the molecular structure. The

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

• reaction, several control experiments were performed. First, the reaction was conducted under the optimized conditions without the addition of CuI. The conversion of the starting substrates to the desired product 4a was decreased and only 14% yield of 4a was obtained (Scheme 3a). However, as shown in entry

• . Control experiments. Proposed reaction mechanism. Scale-up synthesis. Optimization of reaction conditions.a Supporting Information Supporting Information File 8: Experimental details and spectral data. Funding We gratefully acknowledge the financial support from the National Natural Science Foundation

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• ), stereoselectivity (α/β) (b), and reaction time (c). See Scheme 1 for the structures of the compounds. The reaction was quenched after complete consumption of glycosyl donors (TLC control). The crude product was treated with MeONa in MeOH in order to remove all O-acyl groups and then with Ac2O in Py to install O

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• , the amount of alkyl bromide and temperature affected the reaction significantly (Table 1, entries 20 and 21). Finally, control experiments demonstrated that copper promoted the transformation and a base was the indispensable factor for the reaction (Table 1, entries 22–24). Therefore, a facile and

• gram-scale preparation was carried out using 1a, that afforded the desired product in 96% yield (Scheme 4, reaction 4). To gain more insight into the reaction mechanism, several control experiments were carried out (Scheme 5). On one hand, the failure of substrates 10–15 to participate in the reaction

• . Reaction conditions: 1a (0.2 mmol), 2 (0.8 mmol), Cu(OAc)2·H2O (20 mol %), K2CO3 (0.2 mmol), DMSO (1.0 mL), stirred under air at 100 ºC for 12 h. Isolated yield. Further substrate scope investigations and gram-scale application. Control experiments and proposed mechanism. Optimization of the reaction

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• -reductive quench process (Table 1). The indole substrate 1a was chosen as a model substrate, and the reaction mixture was irradiated under 450 nm visible light for 12 h, resulting in the formation of the desired product 3a, albeit in a relatively low yield (Table 1, entry 1). Control experiments revealed

• short, this reaction tolerates different substituents on the indole ring, including electron-donating and electron-withdrawing groups, providing access to a diverse array of dihydropyrido[1,2-a]indolone derivatives. To gain insight into the reaction process, we performed a series of control experiments

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• -binder and resembling intercalators can be directly generated upon irradiation of styrylazines under aerobic conditions, even in the presence of DNA, which provides local and temporal control of the DNA-binding event (Scheme 1) [14]. Specifically, the styrylpyridine, which does not bind to DNA, can be

• comparison with control experiments without photosensitizer. In general, a photoinduced DNA damage by the quinolizinium 3f was observed, whose extent increased with increasing irradiation time and with increasing concentration of 3f. Thus, after 2 min of irradiation with fixed concentration (c = 2.5 × 10−5 M

• min of irradiation (Table 2C). To investigate the mechanism of the DNA cleavage, commonly employed control experiments [46][77] were performed exemplarily with ligand 3f (Table 3 and Supporting Information File 1, Figure S16). To assess the influence of oxygen, the DNA–ligand mixture was irradiated

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• ratio, the order parameter obtained from the film is comparable to that from SWCNTs with lower aspect ratios. This finding implies that precise control of the film formation process, including a proper selection of substrate and deposition/drying steps, is crucial to maximize the CNT-LC utilization

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• protons upon addition of HCl (40 equiv based on PA-Im; Figure 5a,b). These properties enabled a pH-responsive surface charge of its host–guest composite (Table 2). Accordingly, (PA-Im)n·(C60)m displayed a ZP of 60.3 mV at pH 2.8 contrary to 52.8 mV at pH 6.8 (ΔZP = +7.5 mV) [26]. Control experiments using

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• control online if their suggestion is correct. Building one’s own exercises The options presented before do not involve the entire potential of NMRium for teaching. Lecturers may want to include peak picking, or for example, for assignment purposes, ranges/zones picking and the possibility to link signals

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• regulator (cmaR), under the control of tipA promoter (Figure 2A). When we cultured S. albus-cma and analyzed its metabolites by liquid chromatography–mass spectrometry (LC–MS), formation of avenalumic acid was not observed. Instead, production of p-coumaric acid (5) was detected (Figure 2B and Figure S3A,D

• Supporting Information File 1). The control strain of S. albus, which harbors two empty vectors, did not produce p-coumaric acid and compound 6, suggesting that they are the biosynthetic products of the cma cluster (Figure 2B). The yield of compound 6 decreased when cmaG was removed from S. albus-cma

• insights into how highly reducing type II PKSs control starter substrate incorporation. The only difference between avenalumic acid and p-coumaric acid is the chain length. The CLF CmaA5 shows 35.4% identity to AvaA5, which is the lowest similarity score among Ava and Cma protein pairs (Table 1). This is

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• commercially available BF3 diethyl etherate (BF3·Et2O), commonly used in organic synthesis. Indeed, the main advantages of the developed system are: 1) in situ generation of BF3, which avoids its storage and handling, 2) the possibility to control the amount of electrogenerated BF3 using current by simply

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• on an agar plate containing kanamycin and rhamnose. As shown in Figure 4, GFP was successfully expressed. As a negative control, a portion of the culture was also plated on an agar plate containing kanamycin but not rhamnose. As expected, fluorescence of GFP was not observed. The same gene expression

• was found. As a control, ODNs of two colonies containing the GFP gene construct cultivated using commercial GFP gene were also submitted for Sanger sequencing. One sequence was correct. One had a dG-to-dA substitution error (see Supporting Information File 1 for sequence alignments). The sequencing

• observed upon induction using rhamnose (Figure 4). Without rhamnose induction, no fluorescence was observed. The gene expression results were identical to those using the control 800 bp GFP gene from a commercial source. Therefore, the complete process from automated long ODN synthesis, ODN purification by

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• control 12, a secondary Bingel amide in 13 caused a drop to A/D13/12 = 1.6. Similarly, low A/D14/12 = 1.5 for an ester in 14 supported that removal of the hydrogen-bond donor in 5 rather than steric constraints account for the decrease in anion–π catalysis. Elongation of the tether in the ester series 14

• ammonium cation. Normalized against the fullerene-free control 18, an electron-withdrawing cyano group on the cyclopropane in 19 gave similarly poor A/D19/18 = 1.5. At constant tether length as short as possible, strong increases in anion–π catalysis were found by further minimizing entropy losses in

• pseudo-macrocyclic transition states, bound non-covalently to both the active π surface and the ammonium cation of the tether. Normalized against the fullerene-free control 20, the most preorganized dyad 21 gave a new record A/D21/20 = 4.1. This value was much higher than the previous best A/D8/9 = 2.6

Aromatic systems with two and three pyridine-2,6-dicarbazolyl-3,5-dicarbonitrile fragments as electron-transporting organic semiconductors exhibiting long-lived emissions

• Karolis Leitonas,
• Brigita Vigante,
• Dmytro Volyniuk,
• Audrius Bucinskas,
• Pavels Dimitrijevs,
• Sindija Lapcinska,
• Pavel Arsenyan and
• Juozas Vidas Grazulevicius

Beilstein J. Org. Chem. 2023, 19, 1867–1880, doi:10.3762/bjoc.19.139

• -dicarbonitrile (430 mg, 0.5 mmol, 1 equiv) in methanol (70 mL) and diethyl ether (20 mL) and the mixture was stirred under Ar for 1 h (TLC control). Then, the reaction mixture was diluted with dichloromethane and poured into water. The aqueous layer was extracted with dichloromethane (2 × 50 mL), the combined

• allowed precise control of the incident photon wavelength. To measure the photocurrent flowing in the circuit under illumination, a Keithley 6517B electrometer/high resistance meter was utilized, providing accurate and sensitive readings. An energy scan of the incident photons was performed by

N-Boc-α-diazo glutarimide as efficient reagent for assembling N-heterocycle-glutarimide diads via Rh(II)-catalyzed N–H insertion reaction

• Grigory Kantin,
• Pavel Golubev,
• Alexander Sapegin,
• Alexander Bunev and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2023, 19, 1841–1848, doi:10.3762/bjoc.19.136

• 3–5 h (TLC control). Meanwhile, the disappearance of the diazo reagent was considerably slower in the case of more basic heterocycles (pyrazoles, indolines, tetrahydroquinolines), taking anywhere from 16 to 24 hours, and in some cases (imidazole, 7-azaindazole, ethyl isonipecotate, hexamethylenimine

Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors

• Yordanka Mollova-Sapundzhieva,
• Plamen Angelov,
• Danail Georgiev and
• Pavel Yanev

Beilstein J. Org. Chem. 2023, 19, 1804–1810, doi:10.3762/bjoc.19.132

• ≤ 0.78 µg/mL for levofloxacin as the positive control. Conclusion In conclusion, we have demonstrated that β-keto amides and 2-nitrobenzoyl chloride can be used as convenient precursors to a variety of 4-quinolone derivatives. The described approach is realized in a small number of steps, under mild

Selectivity control towards CO versus H₂ for photo-driven CO₂ reduction with a novel Co(II) catalyst

• Lisa-Lou Gracia,
• Philip Henkel,
• Olaf Fuhr and
• Claudia Bizzarri

Beilstein J. Org. Chem. 2023, 19, 1766–1775, doi:10.3762/bjoc.19.129

• complex [Cu(dmp)DPEPhos](BF4), well-investigated and used in several photocatalytic reactions [20][21][41], acting as a cost-effective benchmark photosensitizer. Herein, we present a study for the selectivity control of the novel Co(II) catalyst 1, aiming at maximizing the catalytic efficiency, and

• 12.5%, the selectivity towards CO increased up to 40%. Nevertheless, H2 was still the major product. Thus, we decided to use triethylamine instead of TEOA, since a base is necessary for the reduction of CO2, as also demonstrated by control experiments (Supporting Information File 1, Table S4), where in

Charge carrier transport in perylene-based and pyrene-based columnar liquid crystals

• Alessandro L. Alves,
• Simone V. Bernardino,
• Carlos H. Stadtlober,
• Edivandro Girotto,
• Giliandro Farias,
• Rodney M. do Nascimento,
• Sergio F. Curcio,
• Thiago Cazati,
• Marta E. R. Dotto,
• Juliana Eccher,
• Leonardo N. Furini,
• Hugo Gallardo,
• Harald Bock and
• Ivan H. Bechtold

Beilstein J. Org. Chem. 2023, 19, 1755–1765, doi:10.3762/bjoc.19.128

• was collected in continuous mode from 2° to 30° (2θ angle) at specific temperatures during the cooling down to room temperature. The temperature was controlled with a TCU2000-temperature control unit (Anton Paar). The absorbance spectra in solution and in spin-coated films were collected with an Ocean

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• with fluorinated or chlorinated compounds, producing Qx14 and Qx15, respectively. This modification aimed to improve the device performance by enhancing aggregation control and optimizing the open-circuit voltage. The introduction of functional groups provided a strategic means to tailor the molecular

• of structural modification, the introduction of various functional groups into Qx derivatives has allowed for the precise control of energy levels, bandgaps, and carrier transport properties. For instance, Sharma et al. fine-tuned the intermolecular charge transfer (ICT) transitions and emission

Decarboxylative 1,3-dipolar cycloaddition of amino acids for the synthesis of heterocyclic compounds

• Xiaofeng Zhang,
• Xiaoming Ma and
• Wei Zhang

Beilstein J. Org. Chem. 2023, 19, 1677–1693, doi:10.3762/bjoc.19.123

• Ar and CF3 groups can localize the negative charge and also provide steric effects to afford stereoselective cycloaddition products with 3:1 to 6:1 dr. The steric hindrance also prevents products 9 from undergoing a second cycloaddition. The control reactions of methyl ketone or benzaldehydes gave

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• ethyl acetate, while using a bulk heterojunction (BHJ) comprised of PM6:Y6. High power conversion efficiencies (PCEs) of 13% were achieved compared to control devices using the standard PFN-Br CIL. Keywords: cathode interlayer materials; green solvent processing; organic photovoltaics; Introduction

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• dissolved initiators in the liquid phase during the process. A suspending agent, e.g., polyvinyl alcohol (PVA), is added to the system to prevent coalescence. The viscosity in suspension polymerization is low throughout the process which brings good heat transfer and temperature control, and therefore well

• radical polymerization is that a limited control of molecular weights and architectures can be achieved due to the slow initiation and rapid termination. In 1956, Szwarc coined the term “living polymerization” in an anionic system [27]. Since then, polymer chemists have been in pursuit for a comparable

• successful nitroxide-mediated polymerization (NMP). In 1993, Georges et al. used benzoyl peroxide (BPO) as the initiator and 2,2,6,6-tetramethyl-1-piperidinyloxyl (TEMPO) as the control agent. It was called a bicomponent initiating system containing both stable free nitroxide and a conventional thermal

Lewis acid-promoted direct synthesis of isoxazole derivatives

• Dengxu Qiu,
• Chenhui Jiang,
• Pan Gao and
• Yu Yuan

Beilstein J. Org. Chem. 2023, 19, 1562–1567, doi:10.3762/bjoc.19.113

• . It was found that the desired product could be obtained in 87% yield (Scheme 4). Next, some control experiments were carried out to study the reaction mechanism. We found that the reaction of compound 3a could not be inhibited by TEMPO and BHT under the standard conditions. Therefore, it is assumed

• that the reaction is not a free radical reaction. Based on the control experiments and previous literature [21], we propose the following possible mechanism, which is shown in Scheme 5. Aluminum trichloride reacts with sodium nitrite to form an intermediate aluminum complex A, which is further

• atmosphere, 90 °C, 24 h. Reaction substrate scope of quinolines. Conditions: 1a (0.1 mmol, 1 equiv), 2 (0.2 mmol, 2 equiv), AlCl3 (0.3 mmol, 3 equiv), NaNO2 (1 mmol, 10.0 equiv), DMAc (1.0 mL), N2 atmosphere, 90 °C, 24 h. Gram scale reaction. Control experiments and possible reaction mechanism. Optimization

Synthesis and biological evaluation of Argemone mexicana-inspired antimicrobials

• Jessica Villegas,
• Bryce C. Ball,
• Katelyn M. Shouse,
• Caleb W. VanArragon,
• Ashley N. Wasserman,
• Hannah E. Bhakta,
• Allen G. Oliver,
• Danielle A. Orozco-Nunnelly and
• Jeffrey M. Pruet

Beilstein J. Org. Chem. 2023, 19, 1511–1524, doi:10.3762/bjoc.19.108

• treatment. The mean percentage of viable cells normalized to the control (solvent alone) is shown with associated standard error (n = 4). Significance was determined using two-tailed T-test analysis, with a significance cutoff of P ≤ 0.05. All significant differences are designated with an asterisk and the

• activity after treatment. The mean percentage of viable cells normalized to the control (solvent alone) is shown with associated standard error (n = 4). Significance was determined using two-tailed T-test analysis, with a significance cutoff of P ≤ 0.05. Only original chelerythrine (P < 0.001) was

• determined to be significantly more potent than the methanol negative control. General route to berberine variants, displaying the numbering system for the berberine ring. Synthesis of new berberine variants. Reductive amination to a secondary amine was followed by cyclization with glyoxal to provide the