Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• new level of complexity and promise. The photochromic indigos represent a relatively rare type of visible-light-responsive T-type photoswitches demonstrating negative photochromism. The absorption of the photoswitchable indigos covers the spectral range from green to NIR light (≈550–700 nm) making

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• , Yantai, 264005, P. R. China Chang-Kung Chuang Institute & Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China 10.3762/bjoc.20.20 Abstract A convenient and efficient method for the

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• ), 137.3 (C4a), 139.5 (C10a), 153.1 (C9), 155.6 (C8), 171.5 (COCH3); HRMS–ESI+ (m/z): [M]+ calcd. for C17H17N2O3+, 297.1234; found, 297.1235. Absorption spectra of styrylpyridine derivatives 2a (black), 2b (red), 2c (blue), 2d (green), 2e (magenta), 2f (orange), and 2g (purple) in MeCN (A) and H2O (B) (c

• = 20 µM) in Na phosphate buffer (pH 7.0, T = 20 °C, cNa+ = 16 mM) at LDR = 0 (black), 0.2 (red), 0.5 (green), 1.0 (blue), 1.5 (orange), and 2.0 (magenta). Changes of the absorption (A) and CD (B) spectra during the irradiation of 2e (1) and 2f (2) (c = 20 μM) in the presence of ct DNA (cDNA = 0.1 mM

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• stirring speed of 560 rpm. The regions of interests (ROIs) shown on frame of 1.2 s are denoted as left side (blue ROI), draft tube (green ROI), and right side (yellow ROI). The color of water changed first in the draft tube and then outside the draft tube until the mixing was complete. Thus, the liquid was

• regions used for image processing. To quantify the mixing time, the RGB color model was used, representing each color as a mixture of pure red, green, and blue light of varying levels ranging from 0 to 255 [50]. Because the videos were shot under red light, only the red channel values were used for mixing

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• mixture was stirred in an open flask at rt for 3 days before it was filtered through a plug of SiO2 (CH2Cl2 as eluent) and concentrated under reduced pressure. Flash column chromatography (30% CH2Cl2 (technical grade stabilized with 0.2% EtOH)/heptane) yielded 23 (33 mg, 47%) as a dark green solid. Rf

• orbitals), the dianion has an additional 6π-aromatic cyclopentadienyl anion (highlighted in green), while the cation has a 6π-aromatic 1,3-dithiolium ring (highlighted in red). ORTEP plots (50% probability) and crystal packing of compounds a) 25, b) 26, and c) 29. The respective crystal packing of each

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• BMIm-BF4. The reaction was also carried out using dioxane as solvent [108]. In this case, the product was obtained with a very low yield of 10% (Table 3, entry 13). This result emphasizes the importance of the use of an IL as a solvent, not only for its green aspect, in particular for its very low

• arylalkynes, in terms of selectivity and, in some cases, of yield. The possibility of recycling the ionic liquid for subsequent reactions was successfully demonstrated, confirming the advantage of using BMIm-BF4 as a green solvent for this reaction. Together, these results demonstrate the promise of BMIm-BF4

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• 401 nt ODNs were synthesized and purified with CBP. The two were joined together using Gibson assembly to give the 800 nt green fluorescent protein (GFP) gene construct. The sequence of the construct was verified via Sanger sequencing. To demonstrate the potential use of the long ODN synthesis method

• green fluorescent protein (GFP) gene construct using Gibson assembly. Sanger sequencing confirmed the authenticity of the long ODNs. To demonstrate the applications of the long ODN synthesis method, the GFP gene was expressed in E. coli. Results Long ODN synthesis and CBP purification The 800 nt (all

• of 55% predicted in the above analysis. To demonstrate protein synthesis using genes constructed from the long synthetic ODNs, the pF1K vector containing the 800 bp GFP gene construct derived from the CBP purified 399 and 401 nt ODNs was transformed into E. coli KRX cells. Green fluorescence was

Aromatic systems with two and three pyridine-2,6-dicarbazolyl-3,5-dicarbonitrile fragments as electron-transporting organic semiconductors exhibiting long-lived emissions

• Karolis Leitonas,
• Brigita Vigante,
• Dmytro Volyniuk,
• Audrius Bucinskas,
• Pavels Dimitrijevs,
• Sindija Lapcinska,
• Pavel Arsenyan and
• Juozas Vidas Grazulevicius

Beilstein J. Org. Chem. 2023, 19, 1867–1880, doi:10.3762/bjoc.19.139

• TADF lifetimes of less than 1 µs. TADF-OLEDs based on these materials exhibited EQEmax of up to 25.0% and well-suppressed efficiency roll-offs. Green and orange normal/dual TADF emitters were produced using compounds containing 3,6-di-tert-butylcarbazole and 3,7-dibromophenothiazine moieties. Pyridine

• -3,5-dicarbonitriles substituted with 3,6-di-tert-butylcarbazole were successfully leveraged as TADF emitters in the fabrication of OLED with relatively high device life-times and a high EQEmax of 25% [7]. An effective green TADF was achieved for pyridine-3,5-dicarbonitriles with highly twisted

• be soluble in common organic solvents and to exhibit non-structured emission peaks in the green-yellow color region of the spectrum. The PL intensity of the compounds in solution was enhanced after deoxygenation, indicating the presence of triplet harvesting by the mechanism of thermally activated

Controlling the reactivity of La@C₈₂ by reduction: reaction of the La@C₈₂ anion with alkyl halide with high regioselectivity

• Yutaka Maeda,
• Saeka Akita,
• Mitsuaki Suzuki,
• Michio Yamada,
• Takeshi Akasaka,
• Kaoru Kobayashi and
• Shigeru Nagase

Beilstein J. Org. Chem. 2023, 19, 1858–1866, doi:10.3762/bjoc.19.138

• reduction [21] using a degassed tetrabutylammonium hexafluorophosphate (TBAF) pyridine solution. After stirring for 3 h, a dark green solution was obtained. CS2 was added to precipitate TBAF, and the solution was filtered to collect the La@C2v-C82 anion solution. The solvent was then removed under reduced

• in the second step. Preparation of the La@C2v-C82 anion As described in [21], La@C2v-C82 (0.34 × 10−6 mol) was dissolved in 10 mL of a pyridine solution containing TBAF (0.54 × 10−3 mol) and then stirred for 2 h under an Ar atmosphere. The resulting green solution was concentrated to 2.0 mL. CS2 was

Thienothiophene-based organic light-emitting diode: synthesis, photophysical properties and application

• Recep Isci and
• Turan Ozturk

Beilstein J. Org. Chem. 2023, 19, 1849–1857, doi:10.3762/bjoc.19.137

• an external quantum efficiency (EQE) of 4.61%, along with a green emitting luminescence at 512 nm (Table 2). According to the CIE color space chromaticity diagram, the device was located at the coordinates of 0.16 and 0.51. The obtained EL results are in good agreement with the fluorescence

GlAIcomics: a deep neural network classifier for spectroscopy-augmented mass spectrometric glycans data

• Thomas Barillot,
• Baptiste Schindler,
• Baptiste Moge,
• Elisa Fadda,
• Franck Lépine and
• Isabelle Compagnon

Beilstein J. Org. Chem. 2023, 19, 1825–1831, doi:10.3762/bjoc.19.134

• : GalN; orange: GlcN; green: GlcNAc; red: ManN. Synthetic IRMPD spectrum (grey trace) generated on the basis of a high resolution endogeneous experimental spectrum of GlcN (black trace) from dataset 1 using additional white noise: 10%; linear signal amplitude modulation: 5%; downsampling coefficient: 2

A novel recyclable organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen

• Gyula Dargó,
• Dóra Erdélyi,
• Balázs Molnár,
• Péter Kisszékelyi,
• Zsófia Garádi and
• József Kupai

Beilstein J. Org. Chem. 2023, 19, 1811–1824, doi:10.3762/bjoc.19.133

• ). During solvent selection, both the catalytic performance and green chemistry aspects were addressed. For this purpose, we followed GSK’s solvent sustainability guide [34], which ranks solvents according to their properties, such as waste generation, environmental and health impacts, and boiling point

• (Figure 2). Considering the three factors mentioned above (yield, enantiomeric excess, and green chemistry), toluene was chosen as a solvent for the recycling reactions. The schematic for the recycling by solvent replacement is shown in Figure 3. After the stereoselective Michael addition was completed in

• and toluene, while using 2-MeTHF drastically decreased the enantioselectivity. From the perspective of green chemistry, anisole would be more favorable, but toluene is also a distinctly better alternative to the other solvents (e.g., DCM) commonly used in Michael additions. Another critical aspect

Decarboxylative 1,3-dipolar cycloaddition of amino acids for the synthesis of heterocyclic compounds

• Xiaofeng Zhang,
• Xiaoming Ma and
• Wei Zhang

Beilstein J. Org. Chem. 2023, 19, 1677–1693, doi:10.3762/bjoc.19.123

• Xiaofeng Zhang Xiaoming Ma Wei Zhang Center for Green Chemistry and Department of Chemistry, University of Massachusetts Boston, 100 Morrissey Boulevard, Boston, MA 02125, USA Department of Medicinal Chemistry, Cerevel Therapeutics, 222 Jacobs St Suite 200, Cambridge, MA 02141, USA School of

• , and the Centre for Green Chemistry at the University of Massachusetts Boston.

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• the previously reported cyanated N-annulated perylene diimide (CN-PDIN-H), the N-position was functionalized with a benzyl and pentafluorobenzyl group to make CN-PDIN-B and CN-PDIN-FB, respectively. The materials exhibit solubility in the green solvent, ethyl acetate, and thus were processed into thin

• ethyl acetate, while using a bulk heterojunction (BHJ) comprised of PM6:Y6. High power conversion efficiencies (PCEs) of 13% were achieved compared to control devices using the standard PFN-Br CIL. Keywords: cathode interlayer materials; green solvent processing; organic photovoltaics; Introduction

• devices at low cost with minimal environmental impact becomes viable, especially if processed from green solvents [3][4][5]. These devices have the opportunity to be integrated into buildings, automobiles, Internet of Things (IoT) devices, etc. This has motivated scientists to develop OPV technology over

Synthesis of 5-arylidenerhodanines in L-proline-based deep eutectic solvent

• Stéphanie Hesse

Beilstein J. Org. Chem. 2023, 19, 1537–1544, doi:10.3762/bjoc.19.110

• , volatile solvents, hard conditions, and/or difficult purifications. However, green chemistry has become a crucial sub-discipline in the field of chemistry and the chemical industry is giving major priority to sustainable processes. Since a few years, deep eutectic solvents (DES) are considered as a

• promising emerging class of green solvents as they offer numerous advantages, such as low volatility, non-flammability, chemical and thermal stability, recyclability, and above all a good biodegradability [10]. Moreover, their synthesis is usually easy and cheap as DES are formed by simply mixing an H-bond

• derivative synthesis. In accordance with the principles of green chemistry, we envisaged a procedure with temperatures not too high and reaction times not too long. We also wanted to isolate pure compounds by a simple filtration after precipitation in aqueous media without the need for extraction or

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• and the pyrrolidine molecule are marked in green, 1.478 Å in DMSO and 1.565 Å in CHCl3. Additionally, the lengths of hydrogen bonds between the protons of the hydroxy groups and the oxygen atoms in the upper ring of R[4]A are marked in purple. It is worth noting the significantly shorter length of the

• (PBE0-D4/def2-mTZVPP/CPCM(DMSO) structures of these complexes. The lengths of intermolecular hydrogen bonds between R[4]A and amines are marked in green, while the intramolecular hydrogen bonds between the oxygen anion and the hydrogen atom of the adjacent hydroxy group in R[4]A are marked in violet

• highlighted in blue. Theoretically calculated (PBE0-D4/def2-mTZVPP/CPCM) structures of the R[4]A:pyrrolidine complex in DMSO and CHCl3. The lengths of hydrogen bonds between the R[4]A molecule and the pyrrolidine molecule are marked in green, while the lengths of hydrogen bonds in the upper ring of R[4]A

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• -catalyzed sulfenylation by N-(sulfenyl)succinimides/phthalimides In 2012, Chen and co-workers found that in the reaction of N-(organothio)succinimides 1 and sodium sulfinates 2 using a Lewis acid in ionic liquids (ILs) and water as a green solvent system leads to the formation of thiosulfonates 3 (Scheme 2

• by Guo and Wu et al. (Scheme 19) [56]. Employment of a reusable heterogeneous nanomaterial, mild reaction conditions, avoiding the use of any additive, or base, and water/EtOH as a green solvent system were the advantages of this new method. N-Sulfenyl sulfoximines 45 were synthesized as coupling

• stereogenic carbon centers bearing a sulfur atom. Although, significant efforts have been made to form enantioselective C–S bonds, the direct sulfenylation with more green, economical, and environmentally friendly sulfenylating reagents remains a challenge for organic chemists. N-(Sulfenyl)succinimides

Functional characterisation of twelve terpene synthases from actinobacteria

• Anuj K. Chhalodia,
• Houchao Xu,
• Georges B. Tabekoueng,
• Binbin Gu,
• Kizerbo A. Taizoumbe,
• Lukas Lauterbach and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1386–1398, doi:10.3762/bjoc.19.100

• branches indicate groups of homologous sesquiterpene synthases, green branches indicate groups of homologous diterpene synthases, and purple branches indicate groups of homologous sesterterpene synthases from which at least one representative was functionally characterised. The red arrows highlight enzymes

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• benzoguanidine donor and compare it with the benchmark carbazole-based material (4CzIPN). Extended π-conjugation in 4BGIPN material results in yellow-green luminescence at 512 nm with a fast radiative rate of 5.5 × 10−5 s−1 and a photoluminescence quantum yield of 46% in methylcyclohexane solution. Such a

• is up to 0.4 eV higher in energy than the singlet 1CT state. The high quantum yields of up to 46% indicate that the yellow-green 4BGIPN emitter shows a high promise as a platform for developing bright 4BGIPN-TADF class III type compounds with unity PLQY. Future works may benefit in isolating a

Non-noble metal-catalyzed cross-dehydrogenation coupling (CDC) involving ether α-C(sp³)–H to construct C–C bonds

• Hui Yu and
• Feng Xu

Beilstein J. Org. Chem. 2023, 19, 1259–1288, doi:10.3762/bjoc.19.94

• are widespread as essential building blocks in various drugs, natural products, agrochemicals, and materials. Modern economy requires developing green strategies with improved efficiency and reduction of waste. Due to its atom and step-economy, the cross-dehydrogenative coupling (CDC) reaction has

• synthetic strategy for the construction of C–C bonds in organic synthesis (Scheme 1b). Compared with traditional coupling reactions, the CDC strategy has the following advantages: 1) atom economy, 2) green and efficient reaction, 3) a wide range of substrate sources. Therefore, organic chemists consider the

• source played a key role, with lower yields or no product obtained when the reaction was performed without water or under other light source conditions such as 19 W CFL or irradiation with blue or green LEDs. This method is applicable to various heteroatom-containing compounds such as quinolines

Unravelling a trichloroacetic acid-catalyzed cascade access to benzo[f]chromeno[2,3-h]quinoxalinoporphyrins

• Chandra Sekhar Tekuri,
• Pargat Singh and
• Mahendra Nath

Beilstein J. Org. Chem. 2023, 19, 1216–1224, doi:10.3762/bjoc.19.89

• visible and near IR regions [11][12][13][14]. Similarly, simple quinoxaline-based heterocycles have shown their potential as photosensitizers to induce toxicity in a single cell green algae such as Chlamydomonas reinhardtii [15] and also displayed efficacy against Mycobacterium tuberculosis and other

Selective and scalable oxygenation of heteroatoms using the elements of nature: air, water, and light

• Damiano Diprima,
• Hannes Gemoets,
• Stefano Bonciolini and
• Koen Van Aken

Beilstein J. Org. Chem. 2023, 19, 1146–1154, doi:10.3762/bjoc.19.82

• resulted in a significant reduction in kinetics and selectivity (Table 1, entry 3). Other more green and biobased solvent alternatives, such as ethanol [36], can effectively replace the acetonitrile (for the complete scope of solvents, please consult Supporting Information File 1, Table S2), but reaction

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

• enabling controlled bond activations [45]. Regarding the reductive C–C arylation, the application of the xanthene dye rhodamine 6G (Rh-6G) as a catalyst for the reduction of heteroarenes bearing two or three bromine atoms (e.g., 6) under irradiation with green light (λ = 530 nm) gave monosubstituted

• products (e.g., 7) whereas irradiation with blue light (λ = 455 nm) provided disubstituted products 8 (Figure 5A). Additionally, adding a different trapping reagent before switching from green to blue light allows for a sequential and controlled substitution in a one-pot reaction (Figure 5B). 2,4,6

• -Tribromopyrimidine (6a), whose core pyrimidine structure can be found in many biologically active compounds, could be sequentially substituted with 1,3,5-trimethoxybenzene and N-methylpyrrole to give 8a. The protocol also enabled the selective reductive dehalogenation at the benzylic position of 9a with green light

The effect of dark states on the intersystem crossing and thermally activated delayed fluorescence of naphthalimide-phenothiazine dyads

• Liyuan Cao,
• Xi Liu,
• Xue Zhang,
• Jianzhang Zhao,
• Fabiao Yu and
• Yan Wan

Beilstein J. Org. Chem. 2023, 19, 1028–1046, doi:10.3762/bjoc.19.79

• 3LE appear with a characteristic absorption peak of 3NI* at 463 nm and this process can be ascribed to SOCT-ISC (green line in Figure 7d). This postulation is supported by the nanosecond transient spectra (see below). Nanosecond transient absorption (ns-TA) spectra In order to study the lowest-lying

CO₂ complexation with cyclodextrins

• Cecilie Høgfeldt Jessen,
• Jesper Bendix,
• Theis Brock Nannestad,
• Heloisa Bordallo,
• Martin Jæger Pedersen,
• Christian Marcus Pedersen and
• Mikael Bols

Beilstein J. Org. Chem. 2023, 19, 1021–1027, doi:10.3762/bjoc.19.78

• (40 μM) and 1 (2 mM) in citrate phospate buffer pH 3 (right) from 350–400 nm with 0 (blue), 2 (red), 4 (green), 6 (orange) and 8 (grey) bar of CO2. Binding of CO2 to 1 as a function of pressure. The results of crystallization of α-cyclodextrin from water in an atmosphere of CO2 carried out in a