Construction of pillar[4]arene[1]quinone–1,10-dibromodecane pseudorotaxanes in solution and in the solid state

• Xinru Sheng,
• Errui Li and
• Feihe Huang

Beilstein J. Org. Chem. 2020, 16, 2954–2959, doi:10.3762/bjoc.16.245

• 450001, P. R. China 10.3762/bjoc.16.245 Abstract We report novel pseudorotaxanes based on the complexation between pillar[4]arene[1]quinone and 1,10-dibromodecane. The complexation is found to have a 1:1 host–guest complexation stoichiometry in chloroform but a 2:1 host–guest complexation stoichiometry

• in the solid state. From single crystal X-ray diffraction, the linear guest molecules thread into cyclic pillar[4]arene[1]quinone host molecules in the solid state, stabilized by CH∙∙∙π interactions and hydrogen bonds. The bromine atoms at the periphery of the guest molecule provide convenience for

• the further capping of the pseudorotaxanes to construct rotaxanes. Keywords: host–guest chemistry; pillar[4]arene[1]quinones; pillararenes; pseudorotaxanes; supramolecular chemistry; Introduction Relying on the research of basic science, supramolecular chemistry has become an important mean for

Using multiple self-sorting for switching functions in discrete multicomponent systems

• Amit Ghosh and
• Michael Schmittel

Beilstein J. Org. Chem. 2020, 16, 2831–2853, doi:10.3762/bjoc.16.233

• ), cucurbit[7]uril (3), and the two chalcones 1 and 2 in aqueous solution [48]. When the hosts 3 and 4 were mixed with the trans-chalcones 1 and 2 as guests in a 1:1:1:1 ratio, instantly a statistical mixture formed displaying all four possible host–guest complexes. After the exposure to an acid, the ensuing

• specific release of the guest (PF6−) with the consequent disassembly of the cage [Zn4(65')4]8+ (SelfSORT-II). In SelfSORT-II, the host–guest complex [Zn4(64')4]8+•(C6H12) remained intact, while ≈17% decrease in [Zn4(66')4]8+•(NO3−) was observed. The addition of another aliquot of 4-methoxyaniline to

• SelfSORT-II disassembled the host–guest complex [Zn4(64')4]8+•(C6H12) with the concomitant release of the encapsulated cyclohexane thus generating the state SelfSORT-III. In this process, the 1H NMR signals corresponding to [Zn4(66')4]8+•(NO3−) remained unchanged. At last, heating the mixture to 70 °C for

3-Acetoxy-fatty acid isoprenyl esters from androconia of the ithomiine butterfly Ithomia salapia

• Florian Mann,
• Daiane Szczerbowski,
• Lisa de Silva,
• Melanie McClure,
• Marianne Elias and
• Stefan Schulz

Beilstein J. Org. Chem. 2020, 16, 2776–2787, doi:10.3762/bjoc.16.228

• studies on speciation (species formation), as species often consist of multiple subspecies diverging for a number of adaptive traits, such as color pattern or host plants, which can then cause reproductive isolation. As such, they offer an excellent system to study the mechanisms underlying

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• ]. It is a principle ubiquitously used in biology to achieve high affinity binding events with examples ranging from protein–carbohydrate interactions to host–pathogen interactions or cell surface adhesion [12][13][14]. The high affinity originates from the simultaneous interactions of multiple sites in

A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• obtain analogues cages in future work to explore the properties of these system in terms of their host–guest chemistry or their magnetic behavior. Experimental General All reagents and solvents were purchased from commercial sources and used as received without any further purification. NMR spectra were

Particle size effect in the mechanically assisted synthesis of β-cyclodextrin mesitylene sulfonate

• Stéphane Menuel,
• Sébastien Saitzek,
• Eric Monflier and
• Frédéric Hapiot

Beilstein J. Org. Chem. 2020, 16, 2598–2606, doi:10.3762/bjoc.16.211

• to be a non-interactive guest towards the CD host [18], meaning that no inclusion compounds could be formed during the course of the reaction. Previous works dealing with this reaction showed that β-CDMts featuring a defined number of mesitylenesulfonate groups could be obtained selectively in

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• hydrophobic effect and to host–guest π–π interactions. Hydrophobic surface simulations showed that TBTQ-(OG)6 and C60 forms an amphiphilic supramolecular host–guest complex, which further assembles to microspheres with diameters of 0.3–3.5 μm, as determined by scanning electron microscopy. Keywords

• : fullerenes; host–guest systems; microspheres; supramolecular chemistry; tribenzotriquinacene; Introduction In the field of supramolecular chemistry, host–guest association through noncovalent interactions is an interesting and exciting topic, especially for the encapsulation of various fullerenes, such as

• C60 and C70 [1][2][3][4][5]. It is generally accepted that good complexation of fullerenes requires host molecules with bowl or basket-like shapes, such as calixarenes [6], corannulenes [7][8][9][10], cyclodextrins [11][12][13], cyclotriveratrylenes [14][15][16], and similar macrocycles [17][18][19

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• -dimensional proton (1H) NMR spectra have been used to monitor the interactions between smaller molecules for a long time. The advantages comprise the use of non-isotope-labeled molecules and the fast acquisition time. Furthermore, both components - supramolecular host and guest - can in principle be monitored

• methylated lysine and arginine amino acids were determined using competitive 1H NMR titrations [49]. The supramolecular host is added to two competing guest molecules [85]. When the affinity for one of the guests is known, the affinity for the second guest can then be calculated from the relative amounts of

Host–guest interaction of cucurbit[8]uril with oroxin A and its effect on the properties of oroxin A

• Zhishu Zeng,
• Jun Xie,
• Guangyan Luo,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2020, 16, 2332–2337, doi:10.3762/bjoc.16.194

• Zhishu Zeng Jun Xie Guangyan Luo Zhu Tao Qianjun Zhang Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, No. 2708, South Section of Huaxi Avenue, Huaxi, Guiyang 550025, China 10.3762/bjoc.16.194 Abstract In this study, we investigated the host

• the inclusion compound with Q[8]. Keywords: cucurbit[8]uril; host–guest interaction; inclusion complex; oroxin A; properties; Introduction Cucurbit[n]urils (Q[n]s) are a family of macrocyclic cage compounds synthesized by the condensation of glycoluril and formaldehyde in a strong acidic solution [1

• ][2][3]. As a consequence of the specific structural features of Q[n]s, which have two hydrophilic “portals” decorated with partially negatively charged carbonyl groups and a hydrophobic cavity [4], cucurbit[n]urils are able to form host–guest complexes with a range of drugs [5][6][7]. These complexes

Design and synthesis of a bis-macrocyclic host and guests as building blocks for small molecular knots

• Elizabeth A. Margolis,
• Rebecca J. Keyes,
• Stephen D. Lockey IV and
• Edward E. Fenlon

Beilstein J. Org. Chem. 2020, 16, 2314–2321, doi:10.3762/bjoc.16.192

• molecular knots. The modular second-generation approach to small trefoil knots described herein involves electrostatic interactions between an electron-rich bis-macrocyclic host compound and electron-deficient guests in the threading step. The bis-macrocyclic host was synthesized in eight steps and 6.6

• . Keywords: alkynes; azides; host–guest; macrocycles; molecular knots; Introduction Macrocycles have played a central role in the development of molecular recognition, self-assembled molecular devices, and molecular topology [1][2][3][4][5][6]. For example, early work by Pedersen on crown ethers [1], Lehn

• ]. Herein the synthesis of a unique bis-macrocyclic host 1 is described (Figure 1). Host 1 was designed to be a second-generation building block in the thread–link–cut (TLC) approach to molecular knots [13]. The two 25-atom macrocycles are electron-rich and complementary to the electron-deficient guests bis

Styryl-based new organic chromophores bearing free amino and azomethine groups: synthesis, photophysical, NLO, and thermal properties

• Anka Utama Putra,
• Deniz Çakmaz,
• Nurgül Seferoğlu,
• Alberto Barsella and
• Zeynel Seferoğlu

Beilstein J. Org. Chem. 2020, 16, 2282–2296, doi:10.3762/bjoc.16.189

• amines led to the increase in the Stokes shift and a significant red shift between the absorption and the emission maxima. This was due to the varying electronic contributions to the host structure induced by the heterocyclic amino constituents [50][51][52] (Figure 4). Hydroxide anion sensing properties

The B & B approach: Ball-milling conjugation of dextran with phenylboronic acid (PBA)-functionalized BODIPY

• Patrizia Andreozzi,
• Lorenza Tamberi,
• Elisamaria Tasca,
• Gina Elena Giacomazzo,
• Marta Martinez,
• Mirko Severi,
• Marco Marradi,
• Stefano Cicchi,
• Sergio Moya,
• Giacomo Biagiotti and
• Barbara Richichi

Beilstein J. Org. Chem. 2020, 16, 2272–2281, doi:10.3762/bjoc.16.188

• nanoparticles, depending on the degree of substitution. For example, reaction of vicinal diols of dextran with hydrophobic PBA generates boronate esters, which form nanoparticles in water and are capable to host the anticancer drug doxorubicin [27]. In this report, the advantages of the milling process, such as

Tools for generating and analyzing glycan microarray data

• Akul Y. Mehta,
• Jamie Heimburg-Molinaro and
• Richard D. Cummings

Beilstein J. Org. Chem. 2020, 16, 2260–2271, doi:10.3762/bjoc.16.187

• methods of analysis which may be supported by some of these automated tools. 1. GlycoPattern: Status: Currently Unavailable – Transitioning to new host. Address: N/A. Description: GlycoPattern is a web based resource to support the analysis of glycan array data [42]. Under the hood, it utilizes the

Clustering and curation of electropherograms: an efficient method for analyzing large cohorts of capillary electrophoresis glycomic profiles for bioprocessing operations

• Ian Walsh,
• Matthew S. F. Choo,
• Sim Lyn Chiin,
• Amelia Mak,
• Shi Jie Tay,
• Pauline M. Rudd,
• Yang Yuansheng,
• Andre Choo,
• Ho Ying Swan and
• Terry Nguyen-Khuong

Beilstein J. Org. Chem. 2020, 16, 2087–2099, doi:10.3762/bjoc.16.176

• of heterogeneity and is influenced by several factors including the host expression system and process parameters such as temperature shifts, pH, and the type of basal/feed media [7]. To understand how these environmental factors impact the glycosylation of a biologic, analytical methods are needed

Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• continued rise of problematic bacterial infections. Notably, the LPS pathogenicity is almost entirely due to lipid A because it leads to immunostimulatory effects when LPS dissociates from bacterial membranes within a host [5]. While these immunostimulatory effects can be beneficial in the setting of

Design, synthesis and application of carbazole macrocycles in anion sensors

• Alo Rüütel,
• Ville Yrjänä,
• Sandip A. Kadam,
• Indrek Saar,
• Mihkel Ilisson,
• Astrid Darnell,
• Kristjan Haav,
• Tõiv Haljasorg,
• Lauri Toom,
• Johan Bobacka and
• Ivo Leito

Beilstein J. Org. Chem. 2020, 16, 1901–1914, doi:10.3762/bjoc.16.157

• synthesis to access up to –[CH2]10– macrocycles or acyl halides to access up to –[CH2]14– macrocycles. Seventy-five receptor–anion complexes were modelled and studied with COSMO-RS, in addition to all free host molecules. In order to predict initial selectivity towards carboxylates, 1H NMR relative

• carboxylate anion will prove challenging. Secondly, the X-COO− group itself may become protonated under specific conditions. In this scenario, selectivity would be lost immediately. This puts restraints on the molecular design of the receptor molecule. The host molecule cannot include any functional groups

• attractive neutral host for anions [13]. It is formally a 16-membered ring, but for the above reasons no anion, not even F− fitted inside the ring – all bound anions reside on the surface of the ring [14]. Often in such cases, two receptors stack the guest molecule in a “sandwich” like manner, e.g., the

Synthesis of the tetrasaccharide repeating unit of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71^T using linear and one-pot iterative glycosylations

• Arin Gucchait,
• Pradip Shit and
• Anup Kumar Misra

Beilstein J. Org. Chem. 2020, 16, 1700–1705, doi:10.3762/bjoc.16.141

• Azospirillum rely on capsular and O-specific polysaccharides present in the bacteria cell wall [12]. Due to their structural orientation, cell-wall polysaccharides play a pivotal role in the initial stage of the host–microbes interactions and colonization of rhizobacteria in the plant roots [13]. Therefore, it

Synthesis of Streptococcus pneumoniae serotype 9V oligosaccharide antigens

• Sharavathi G. Parameswarappa,
• Claney L. Pereira and
• Peter H. Seeberger

Beilstein J. Org. Chem. 2020, 16, 1693–1699, doi:10.3762/bjoc.16.140

• are still of growing concern due to an increase in non-vaccine serotypes and the cost of implementing these expensive vaccines in national immunization programs [4][5][6]. CPS is an important bacterial virulence factor and is critical for the interaction with the host as it helps the bacteria to

• escape the host immune response [1][7]. These polysaccharides of SP consist of repeating units (RU) that range from di- to heptasaccharides that may be branched and/or charged [8]. Modifications such as O-acetylation, phosphorylation, and sulfation further increase CPS complexity. Many bacterial

Clickable azide-functionalized bromoarylaldehydes – synthesis and photophysical characterization

• Dominik Göbel,
• Marius Friedrich,
• Enno Lork and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2020, 16, 1683–1692, doi:10.3762/bjoc.16.139

• non-radiative transitions can be achieved by the host–guest method [50][51][52] or by crystallization [53][54][55][56][57]. In difference to the liquid phase, the highly ordered packing and the restriction of molecular motions in the crystalline state favor a persistent luminescence. The promotion of

Antibacterial scalarane from Doriprismatica stellata nudibranchs (Gastropoda, Nudibranchia), egg ribbons, and their dietary sponge Spongia cf. agaricina (Demospongiae, Dictyoceratida)

• Cora Hertzer,
• Stefan Kehraus,
• Nils Böhringer,
• Fontje Kaligis,
• Robert Bara,
• Dirk Erpenbeck,
• Gert Wörheide,
• Till F. Schäberle,
• Heike Wägele and
• Gabriele M. König

Beilstein J. Org. Chem. 2020, 16, 1596–1605, doi:10.3762/bjoc.16.132

• [25]. Yet determining the origin and in vitro production of these metabolites is anything but trivial. Sponges are known to host complex symbiont communities, with up to 30–60% as microbial biomass [13][77]. These highly species-specific communities are most probably vertically transmitted [78] and

Heterogeneous photocatalysis in flow chemical reactors

• Christopher G. Thomson,
• Ai-Lan Lee and
• Filipe Vilela

Beilstein J. Org. Chem. 2020, 16, 1495–1549, doi:10.3762/bjoc.16.125

• moulds, which could not be achieved with the blue laser [50]. Heterogeneous upconversion systems are generally crystalline nanomaterials comprising a host matrix of typically NaYF4, doped with a mixture of lanthanide ions, which act as light-absorbing sensitisers (e.g., Yb3+) and energy-combining

4-Hydroxy-3-methyl-2(1H)-quinolone, originally discovered from a Brassicaceae plant, produced by a soil bacterium of the genus Burkholderia sp.: determination of a preferred tautomer and antioxidant activity

• Dandan Li,
• Naoya Oku,
• Yukiko Shinozaki,
• Yoichi Kurokawa and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2020, 16, 1489–1494, doi:10.3762/bjoc.16.124

• in the host organisms. Keywords: antioxidant; Burkholderia sp; quinolone; soil bacterium; Zn2+ enrichment culture; Findings 4-Hydroxy-2(1H)-quinolone (3) is a unique structural motif mostly found in alkaloids from rutaceous plants (family Rutaceae) [1][2]. This motif has several tautomeric forms

• reactive oxygen species (ROS), is implemented in eukaryotic cells, including protists [32], as an innate immune response to deactivate foreign substances or as part of phagocytic digestion of internalized nutrients [33]. Pathogenic microbes are equipped with a multitude of strategies to circumvent host

Highly selective Diels–Alder and Heck arylation reactions in a divergent synthesis of isoindolo- and pyrrolo-fused polycyclic indoles from 2-formylpyrrole

• Carlos H. Escalante,
• Eder I. Martínez-Mora,
• Carlos Espinoza-Hicks,
• Alejandro A. Camacho-Dávila,
• Fernando R. Ramos-Morales,
• Francisco Delgado and
• Joaquín Tamariz

Beilstein J. Org. Chem. 2020, 16, 1320–1334, doi:10.3762/bjoc.16.113

• stereoselective approaches of substrates and reagents or catalysts in a variety of processes. Examples include the substrate–enzyme recognition (the host–guest interaction) responsible for inducing pharmacological activity, the DNA-intercalation capable of generating biomolecular activity, molecular dynamics [63

[3 + 2] Cycloaddition with photogenerated azomethine ylides in β-cyclodextrin

• Margareta Sohora,
• Leo Mandić and
• Nikola Basarić

Beilstein J. Org. Chem. 2020, 16, 1296–1304, doi:10.3762/bjoc.16.110

• the macrocyclic host affected the stereochemistry of the reaction. Moreover, we studied photodecarboxylation reactions initiated by the phthalimide chromophore [17][18][19] and applied them in cyclizations with memory of chirality [20] and diastereoselective peptide cyclizations [21

• . Irradiation of such a complex leads to decarboxylation and formation of the reactive intermediate, azomethine ylide, within the supramolecular host. The subsequent [3 + 2] cycloaddition within the inclusion complex gives heterocyclic cycloadducts, even though it is conducted in aqueous solvent in which ylides

• have short lifetimes. The reaction needs to be optimized for different substrates with the right choice of host size. However, the proof of principle provides a new idea for the development of supramolecular systems for the tuning of photochemical reactivity. Experimental General 1H and 13C NMR

Anthelmintic drug discovery: target identification, screening methods and the role of open science

• Frederick A. Partridge,
• Ruth Forman,
• Carole J. R. Bataille,
• Graham M. Wynne,
• Marina Nick,
• Angela J. Russell,
• Kathryn J. Else and
• David B. Sattelle

Beilstein J. Org. Chem. 2020, 16, 1203–1224, doi:10.3762/bjoc.16.105

• schistosomiasis treatment is the effect which climate change may have on aquatic environments (and the intermediate freshwater snail host Biomphalaria glabrata) and therefore on the distribution of water-borne diseases like schistosomiasis [47]. Similarly to the STHs, the WHO 2020 target for schistosomiasis is

• and at low cost which enables high-throughput chemical and genetic screening studies. It is often difficult or impossible to undertake comparable studies on parasitic worms due to the challenges of maintaining parasitic worms outside their host, although rodent models are available for many classes of

• Genomic resources are important for target identification, particularly in the case of parasites, as the life stages found in the host are often difficult to obtain or culture, and few molecular tools are available. WormBase ParaSite [107] is an important central resource for helminth genomic data [108