Regiodivergent synthesis of functionalized pyrimidines and imidazoles through phenacyl azides in deep eutectic solvents

• Paola Vitale,
• Luciana Cicco,
• Ilaria Cellamare,
• Filippo M. Perna,
• Antonio Salomone and
• Vito Capriati

Beilstein J. Org. Chem. 2020, 16, 1915–1923, doi:10.3762/bjoc.16.158

• imidazole (32–98% yield) and pyrimidine derivatives (45–88% yield), with a broad substrate scope, when using deep eutectic solvents [choline chloride (ChCl)/glycerol (1:2 mol/mol) and ChCl/urea (1:2 mol/mol)] as environmentally benign and non-innocent reaction media, by modulating the temperature (25 or 80

• at 50 °C, we were able to isolate by column chromatography on silica gel a product which was characterized as 2-benzoyl-(4 or 5)-phenyl-(1H)-imidazole (3a/3a', Scheme 2). This adduct was formed as a mixture of two tautomers (3a and 3a'; 3a/3a' ratio: 57:43, Supporting Information File 1) [28][29] in

• chromatography on silica gel (hexane/EtOAc 5:1–4:1) to afford the desired α-azido ketone 2. Characterization data of the isolated 2-azido ketones are provided in Supporting Information File 1. Synthesis of 2-benzoyl-4-phenyl-1H-imidazole (3a) and 2-benzoyl-5-phenyl-1H-imidazole (3a'). Typical procedure Sodium

Natural dolomitic limestone-catalyzed synthesis of benzimidazoles, dihydropyrimidinones, and highly substituted pyridines under ultrasound irradiation

• Kumar Godugu,
• Venkata Divya Sri Yadala,
• Mohammad Khaja Mohinuddin Pinjari,
• Trivikram Reddy Gundala,
• Lakshmi Reddy Sanapareddy and
• Chinna Gangi Reddy Nallagondu

Beilstein J. Org. Chem. 2020, 16, 1881–1900, doi:10.3762/bjoc.16.156

• synthesis of 1-benzyl-2-phenyl-1H-benzo[d]imidazole (3a). At first, a control experiment was conducted by using model substrates, 1 and 2a, in H2O in the absence of catalyst under ultrasound irradiation for 60 min at 45–50 °C. It was found that the reaction did not proceed in the absence of a catalyst

Mechanochemical green synthesis of hyper-crosslinked cyclodextrin polymers

• Alberto Rubin Pedrazzo,
• Fabrizio Caldera,
• Marco Zanetti,
• Silvia Lucia Appleton,
• Nilesh Kumar Dhakar and
• Francesco Trotta

Beilstein J. Org. Chem. 2020, 16, 1554–1563, doi:10.3762/bjoc.16.127

• nanosponges with selected organic dyes that are used as probe molecules with different structures (methyl red, rhodamine B, and fluorescein). The simple functionalization of the cyclodextrin NS, in this case via reactive imidazole moieties, is particularly interesting for a variety of applications. For

• groups of CDs, forming a carbonate bond between two monomers and therefore releasing two imidazole molecules that are soluble in water and could be removed after synthesis. CDI, however, may react asymmetrically forming only one bond with cyclodextrin leaving one of the two moieties reactive. This is

• consistent with what was reported in the literature: the first activation of an alcohol by carbonyl imidazole showed faster kinetics than the second one, which needed longer reaction times and/or a higher temperature (from 60 °C to 80 °C) to obtain a significant yield [31][32]. To distinguish between the

Copper-based fluorinated reagents for the synthesis of CF₂R-containing molecules (R ≠ F)

• Louise Ruyet and
• Tatiana Besset

Beilstein J. Org. Chem. 2020, 16, 1051–1065, doi:10.3762/bjoc.16.92

• oxazoles (17 examples, up to 87% yield) were difluoromethylated but a variety of other heteroarenes turned out to be suitable such as pyridine, imidazole, benzo[d]thiazole, benzo[b]thiophene, benzo[d]oxazole, thiazole and thiophene derivatives (Scheme 6). Copper-based CF2FG-containing reagents Besides the

A systematic review on silica-, carbon-, and magnetic materials-supported copper species as efficient heterogeneous nanocatalysts in “click” reactions

• Pezhman Shiri and
• Jasem Aboonajmi

Beilstein J. Org. Chem. 2020, 16, 551–586, doi:10.3762/bjoc.16.52

• -heterocyclic carbene) in multiple steps [28]. Initially, imidazole (28) was immobilized on the silica nanomaterial 27 by a nucleophilic attack of 28 on the iodopropylated silica nanomaterial 27 in acetonitrile under reflux for 48 h. The obtained 1-propylimidazole–nanosilica compound ImP–nSiO2 (29) was filtered

Architecture and synthesis of P,N-heterocyclic phosphine ligands

• Wisdom A. Munzeiwa,
• Bernard Omondi and
• Vincent O. Nyamori

Beilstein J. Org. Chem. 2020, 16, 362–383, doi:10.3762/bjoc.16.35

• addition of chlorophosphine resulted in the desired ligand 58. However, the overall yield was lower than the yield obtained through the other method. Imidazole can be regioselectively deprotonated at the more acidic C2 position. The mono- and diphosphine imidazole ligands 62 and 63 were conveniently

• synthesized by Milde et al. (Scheme 11) [8]. The imidazole intermediates 61 were obtained by coupling iodoaniline (59) with the dialdehyde 60. Selective metalation of the imidazole ring and subsequent treatment with the phosphine gave the imidazolylphosphine ligands 62 and 63 (46–64%). The fast and clean

• sterically crowded biaryl ligands as they showed outstanding performances [8]. Phosphines with imidazole and imidazoline functional groups present some interesting features. The imidazolium functionality mimics active sites in biological molecules [83][84]. The ionic nature adds another dimension to the

Copper-catalyzed enantioselective conjugate addition of organometallic reagents to challenging Michael acceptors

• Delphine Pichon,
• Jennifer Morvan,
• Christophe Crévisy and
• Marc Mauduit

Beilstein J. Org. Chem. 2020, 16, 212–232, doi:10.3762/bjoc.16.24

• in moderate to good yields (28–85%) with remarkable regio- (>95%) and enantioselectivities (91–95% ee) [39]. Interestingly, DFT calculations supported the crucial role of the imidazole moiety towards the 1,4-addition (vs 1,6 or 1,8) [39]. Thanks to the efficient post-transformation of the

Photocontrolled DNA minor groove interactions of imidazole/pyrrole polyamides

• Sabrina Müller,
• Jannik Paulus,
• Jochen Mattay,
• Heiko Ihmels,
• Veronica I. Dodero and
• Norbert Sewald

Beilstein J. Org. Chem. 2020, 16, 60–70, doi:10.3762/bjoc.16.8

• compounds have frequently been employed as modules, e.g., to control protein–DNA interactions. However, their use in conjunction with minor groove-binding imidazole/pyrrole (Im/Py) polyamides is yet unprecedented. Dervan-type Im/Py polyamides were equipped with an azobenzene unit, i.e., 3-(3-(aminomethyl

• acted as a building block inducing a reverse turn, which favored hydrogen bonds between the pyrrole/imidazole amide and the DNA bases. In contrast, the E-configured polyamides did not induce any ICD characteristic for minor groove binding. The incorporation of the photoswitchable azobenzene unit is a

• . A major breakthrough concerning selective small DNA-targeting molecules was the use of pyrrole/imidazole hairpin polyamides. They are conceptually derived from the natural products netropsin and distamycin A, which selectively bind to particular sequences of the DNA duplex [2][3][4]. Covalent

Chemical tuning of photoswitchable azobenzenes: a photopharmacological case study using nicotinic transmission

• Lorenzo Sansalone,
• Jun Zhao,
• Matthew T. Richers and
• Graham C. R. Ellis-Davies

Beilstein J. Org. Chem. 2019, 15, 2812–2821, doi:10.3762/bjoc.15.274

• , n = 7 cells, *** indicates P < 0.001 in paired t-test. Synthesis of 4FABTA. a) Reagents and conditions: (a) 3-Butynol, PdCl2(PPh3)2, CuI, THF, rt, 93%; (b) H2, PtO2, EtOH, rt, 71%; (c) TBDMS-Cl, imidazole, DCM, rt, 96%; (d) n-BuLi, THF, −78 °C to −50 °C; (e) NBS, ACN, rt, 89%; (f) CuCN, NMP, 202 °C

Photochromic diarylethene ligands featuring 2-(imidazol-2-yl)pyridine coordination site and their iron(II) complexes

• Andrey G. Lvov,
• Max Mörtel,
• Anton V. Yadykov,
• Frank W. Heinemann,
• Valerii Z. Shirinian and
• Marat M. Khusniyarov

Beilstein J. Org. Chem. 2019, 15, 2428–2437, doi:10.3762/bjoc.15.235

• cyclohexenone bridges [32]. These methods utilize ethyl 4-(2,5-dimethylthiophen-3-yl)-3-oxobutanoate (Scheme 1) or its analogs as starting materials. To obtain novel diarylethenes with 2-(imidazol-2-yl)pyridine moiety, here we have synthesized a previously unknown imidazole derivative 1 by a one-pot

• good accordance with previous DFT calculations [37], the molecule shows exclusively antiparallel conformation [8] of the thiophene and imidazole groups of the photoactive diarylethene moiety, with the respective α-methyl groups pointing in different directions. The thiophene and imidazole rings are

• yield is lower [40]. The quantum yields for cyclohexenone derivatives 6 and 7 are in the 0.22–0.27 range. Similar to some other cyclopentene derivatives [41], diarylethene 4 possesses low cycloreversion quantum yields at 4–6%. However, in accordance with previous results on imidazole derivatives [42], 3

Reversible switching of arylazopyrazole within a metal–organic cage

• Anton I. Hanopolskyi,
• Soumen De,
• Michał J. Białek,
• Yael Diskin-Posner,
• Liat Avram,
• Moran Feller and
• Rafal Klajn

Beilstein J. Org. Chem. 2019, 15, 2398–2407, doi:10.3762/bjoc.15.232

• Arylazopyrazoles represent a new family of molecular photoswitches characterized by a near-quantitative conversion between two states and long thermal half-lives of the metastable state. Here, we investigated the behavior of a model arylazopyrazole in the presence of a self-assembled cage based on Pd–imidazole

•  2 above). For example, E-1’s Ha protons at 1.07 ppm correlate with 2’s axial – but not equatorial – acidic imidazole H1 protons (cyan in Figure 2), which is in agreement with the close proximity of these two protons in the X-ray structure (da–1 = 3.68 Å). Conversely, Hc protons only correlate with

• of signals at 7.88–7.60 (all of which could be attributed to 2) correlate strongly with the protons of all three methyl groups of Z-1 (Ha, Hb, and Hc), in addition to exhibiting weaker NOE correlations with Hd, He, and Hf. Furthermore, the acidic imidazole protons correlate with most of Z-1’s protons

Click chemistry towards thermally reversible photochromic 4,5-bisthiazolyl-1,2,3-triazoles

• Chenxia Zhang,
• Kaori Morinaka,
• Mahmut Kose,
• Takashi Ubukata and
• Yasushi Yokoyama

Beilstein J. Org. Chem. 2019, 15, 2161–2169, doi:10.3762/bjoc.15.213

• (thiazole) [39], and 10c (imidazole) [40] in non-polar solvents, 1c has a much longer absorption maximum in toluene (Scheme 4, Table 2). It should also be noted that the absorption maximum wavelength is longer when the central ethene moiety is part of the aromatic ring than when it is an isolated ethene in

Synthesis of 1-azaspiro[4.4]nonan-1-oxyls via intramolecular 1,3-dipolar cycloaddition

• Yulia V. Khoroshunova,
• Denis A. Morozov,
• Andrey I. Taratayko,
• Polina D. Gladkikh,
• Yuri I. Glazachev and
• Igor A. Kirilyuk

Beilstein J. Org. Chem. 2019, 15, 2036–2042, doi:10.3762/bjoc.15.200

• 7c. 1,3-Dipolar cycloaddition of nitrones to alkenes is known to be reversible [13][14]. We recently reported a similar reversibility of the intramolecular cyclization of sterically hindered pent-4-enylnitrone of the 2H-imidazole series [15]. Treatment with Zn in an AcOH/EtOH/EDTA/Na2 mixture was

Synthesis of benzo[d]imidazo[2,1-b]benzoselenoazoles: Cs₂CO₃-mediated cyclization of 1-(2-bromoaryl)benzimidazoles with selenium

• Mio Matsumura,
• Yuki Kitamura,
• Arisa Yamauchi,
• Yoshitaka Kanazawa,
• Yuki Murata,
• Tadashi Hyodo,
• Kentaro Yamaguchi and
• Shuji Yasuike

Beilstein J. Org. Chem. 2019, 15, 2029–2035, doi:10.3762/bjoc.15.199

• , imidazo[2,1-b]selenoazoles, in which imidazole and selenophene are condensed, have been synthesized, and it was described in a patent that imidazo[2,1-b]benzoselenazole-3-acetamide derivatives have anticonvulsant activity [5]. Three ring closure reactions for the synthesis of imidazo[2,1-b]selenoazole

• -bromophenyl)imidazole (1i) with Se powder gave the corresponding tricyclic product 10 in low yield. Since the reaction conditions for the synthesis of the starting material 1 and the cyclization of 1 with Se powder are similar, we carried out a three-component reaction of benzimidazole, 1-bromo-2

• mechanism is as depicted in Scheme 3. The base deprotonates the imidazole ring giving an anion at the 2-position, which reacts with selenium by nucleophilic attack, resulting in C(Het)–Se bond formation. Next, the ring closure proceeds via the SNAr reaction by attack of the selenide anion on the phenyl

Reactions of 2-carbonyl- and 2-hydroxy(or methoxy)alkyl-substituted benzimidazoles with arenes in the superacid CF₃SO₃H. NMR and DFT studies of dicationic electrophilic species

• Dmitry S. Ryabukhin,
• Alexey N. Turdakov,
• Natalia S. Soldatova,
• Mikhail O. Kompanets,
• Alexander Yu. Ivanov,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2019, 15, 1962–1973, doi:10.3762/bjoc.15.191

• reaction [14]. Recently, several hydroxyalkylation reactions followed by alkylation of arenes have been reported involving heterocycle-based superelectrophiles: pyridines, thiazoles, quinolines, isoquinolines, pyrazines, pyrazoles, imidazole and furans, bearing a formyl (carbonyl) group [15][16][17][18][19

• , superelectrophilic activation of the carbonyl group was achieved for 5-formyl and 5-acetylimidazoles in triflic acid CF3SO3H (TfOH) by Klumpp [19]. It was proposed that the triflic acid initially protonated the imidazole ring and an equilibrium was established with the O-protosolvated form or the dicationic

N-(1-Phenylethyl)aziridine-2-carboxylate esters in the synthesis of biologically relevant compounds

• Iwona E. Głowacka,
• Aleksandra Trocha,
• Andrzej E. Wróblewski and
• Dorota G. Piotrowska

Beilstein J. Org. Chem. 2019, 15, 1722–1757, doi:10.3762/bjoc.15.168

Recent advances on the transition-metal-catalyzed synthesis of imidazopyridines: an updated coverage

• Gagandeep Kour Reen,
• Ashok Kumar and
• Pratibha Sharma

Beilstein J. Org. Chem. 2019, 15, 1612–1704, doi:10.3762/bjoc.15.165

An azobenzene container showing a definite folding – synthesis and structural investigation

• Abdulselam Adam,
• Saber Mehrparvar and
• Gebhard Haberhauer

Beilstein J. Org. Chem. 2019, 15, 1534–1544, doi:10.3762/bjoc.15.156

• the amino acid side chains, are described in the literature [49][50]. One example is the platform 4, which consists of two imidazole building blocks connected by two azobenzene units (Figure 2) [50]. Irradiation of the platform 4 with UV light results in a trans→cis isomerization accompanied by a

• reduction of the distance between the two isopropyl groups. As further example the chiral foldable container 5 should be mentioned [49]. Here, two imidazole-containing macrocycles are linked to each other by two azobenzene units (Figure 2). Irradiation with UV light causes two consecutive trans→cis

• the chiral switchable container we intended to use the imidazole-containing peptides 2a (R = R’ = iPr) and 3a (R = R’ = iPr) as macrocycles (see Figure 1 and Scheme 1). Both feature two imidazole units which should be used to attach the azobenzene groups. Additionally, platform 2a has two valine units

Synthesis and biological evaluation of truncated derivatives of abyssomicin C as antibacterial agents

• Leticia Monjas,
• Peter Fodran,
• Johanna Kollback,
• Carlo Cassani,
• Thomas Olsson,
• Maja Genheden,
• D. G. Joakim Larsson and
• Carl-Johan Wallentin

Beilstein J. Org. Chem. 2019, 15, 1468–1474, doi:10.3762/bjoc.15.147

• (2.0 equiv), imidazole (4.0 equiv), DMF, rt, 2 h, 95%. e) HF·pyridine, pyridine, THF, rt, 45 h, 75%. f) i: (COCl)2 (1.2 equiv), DMSO (2.4 equiv), CH2Cl2, −78 °C, 1.5 h; ii: Et3N (5.0 equiv), −78 °C to rt, 1 h, 91%. Synthesis of the building blocks 4 and 5. a) TFA (1.1 equiv), CH2Cl2, rt, 24 h, 84% (14

Steroid diversification by multicomponent reactions

• Leslie Reguera,
• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Daniel G. Rivera

Beilstein J. Org. Chem. 2019, 15, 1236–1256, doi:10.3762/bjoc.15.121

• ] reported another example of a diastereoselective MCR between a 6-ketosteroid, 2-aminopyridines and an isocyanide, using propylphosphonic acid anhydride (TP3) as catalyst to afford a steroidal derivative with an imidazole-pyridine moiety attached to ring B. This moiety is present in several compounds

A three-component, Zn(OTf)₂-mediated entry into trisubstituted 2-aminoimidazoles

• Alexei Lukin,
• Anna Bakholdina,
• Anna Kryukova,
• Alexander Sapegin and
• Mikhail Krasavin

Beilstein J. Org. Chem. 2019, 15, 1061–1064, doi:10.3762/bjoc.15.103

• co-workers describing Zn(OTf)2-catalyzed, microwave-promoted conversion of a mixture of a secondary propargylamide and an amine into a trisubstituted imidazole 1 [1][2] inspired us to explore several variants of this methodology. Last year, we described the synthesis of differently substituted

• which makes it a useful tool for library array synthesis. The investigation of other metal-catalyzed transformations of propargylureas is underway in our laboratories and will be reported in due course. Examples of imidazole (1 and 2) and oxazole (3) syntheses from propargylamides previously reported

Novel (2-amino-4-arylimidazolyl)propanoic acids and pyrrolo[1,2-c]imidazoles via the domino reactions of 2-amino-4-arylimidazoles with carbonyl and methylene active compounds

• Victoria V. Lipson,
• Tetiana L. Pavlovska,
• Nataliya V. Svetlichnaya,
• Anna A. Poryvai,
• Nikolay Yu. Gorobets,
• Erik V. Van der Eycken,
• Irina S. Konovalova,
• Svetlana V. Shiskina,
• Alexander V. Borisov,
• Vladimir I. Musatov and
• Alexander V. Mazepa

Beilstein J. Org. Chem. 2019, 15, 1032–1045, doi:10.3762/bjoc.15.101

• selectively led to the corresponding Knoevenagel–Michael adducts containing a free amino group in the imidazole fragment. The adducts derived from Meldrum’s acid have been smoothly converted into 1,7-diaryl-3-amino-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-5-ones and 3-(2-amino-4-aryl-1H-imidazol-5-yl)-3

• -arylpropanoic acids. The interaction of 2-amino-4-arylimidazoles with aromatic aldehydes or isatins and acyclic methylene active compounds has led to the formation of pyrrolo[1,2-c]imidazole-6-carbonitriles, pyrrolo[1,2-с]imidazole-6-carboxylates and spiro[indoline-3,7'-pyrrolo[1,2-c]imidazoles], which can be

• considered as the analogues of both 3,3’-spirooxindole and 2-aminoimidazole marine sponge alkaloids. Keywords: 2-amino-4-arylimidazole; (2-amino-4-arylimidazolyl)propanoic acid; isatin; Meldrum’s acid; multicomponent reactions; pyrrolo[1,2-c]imidazole; 3,3’-spirooxindoles; Introduction Heterocyclic

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• organocatalysis using PhI (10 mol %)–mCPBA at ambient conditions as well as under neat mixing [115]. The N1,N1-dibenzylbenzene-1,2-diamine (Figure 27) which is an integrated system by the combination of aniline and N,N-dibenzylaniline led to the successful formation of 1-benzyl-2-phenyl-benzo[d]imidazole 48 under

Synthesis of acylglycerol derivatives by mechanochemistry

• Karen J. Ardila-Fierro,
• Andrij Pich,
• Marc Spehr,
• José G. Hernández and
• Carsten Bolm

Beilstein J. Org. Chem. 2019, 15, 811–817, doi:10.3762/bjoc.15.78

• . Results and Discussion To commence, we focused on the synthesis of tert-butyldimethylsilyl glycidyl ether (2) by reacting glycidol (1; 0.67 mmol) and tert-butyldimethylsilyl chloride (TBDMSCl) in the presence of imidazole in a mixer mill (MM, Scheme 2) [32]. After 2 h of milling at 25 Hz full consumption

An efficient and concise access to 2-amino-4H-benzothiopyran-4-one derivatives

• Peng Li,
• Yongqi Wu,
• Tingting Zhang,
• Chen Ma,
• Ziyun Lin,
• Gang Li and
• Haihong Huang

Beilstein J. Org. Chem. 2019, 15, 703–709, doi:10.3762/bjoc.15.65

• -aminobenzothiopyranones containing 8-nitro and 6-trifluoromethyl substituents in low to moderate yields through the transformation of a 2-methylthio substituent under harsh conditions (method F, Scheme 1) [5]. In addition, the nucleophile imidazole could also react with 3-bromobenzothiopyranones to afford 2