Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• ). This is also the basic compound used in the transformations that are studied in this work due to the high kinetic stability and good solubility ensured by the tert-butyl groups. The largest positive charge of the C(1)–C(2)–C(3) segment is concentrated at the C(2) atom. The charge at the other

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• devices [1][2][3][4][5][6][7][8]. In this regard, the planar character of most (non-substituted) π-CPCs represents a challenge, as it results in very low solubility in common organic solvents due to favorable intermolecular π–π stacking interactions. This inherently hampers the purification of the target

• pristine acene with a dienophile to transiently form a cycloadduct with increased solubility for processing purposes, and unmasking it afterwards via a retro-Diels–Alder reaction [16][17][18][19]. In parallel to retro-Diels–Alder reactions, another efficient strategy for the in situ aromatization of target

• precursors of π-CPCs bearing non linearly-fused benzene rings. In addition, the non-planar geometry of such heteropines appears as an asset towards increased solubility, and the existence of several oxidation states for these heteroatoms expands the panel of reaction conditions applicable to trigger the

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• several minutes with a good yield (Scheme 4). The spectral data fully confirmed the purity and asymmetric structure of product 11. It should be emphasized that the isolation and purification of nitro compounds 10 and 11 is complicated by their low solubility in traditional organic solvents, sensitivity to

• decided to carry out its oxidation to 12 by the traditional method – the action of chloranil in boiling benzene or chloroform (in the latter, the solubility of the components is somewhat better, although the temperature of the process decreases). At the end of the synthesis, the reaction mass was treated

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• significant difference in the values of β-angles, which results in some differences in the densities [10]. The solubility of crystalline indigo is poor even in polar solvents such as aniline, nitrobenzene, phenol, phthalic anhydride, DMSO, and DMF upon heating. The reason for the low solubility and high

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• applications due to their improved solubility in aqueous systems. Assembly is achieved by integrating distinct carbohydrate, peptide, and polyprenyl phosphate building blocks. This modular synthetic method allows for the strategic substitution of constituent building blocks at different synthetic stages and

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• excellent yield and enantioselectivity. Keywords: asymmetric organocatalysis; chiral Brønsted acid; 3,3-difluoroindoline; Hantzsch ester; transfer hydrogenation; Introduction The introduction of fluoro atoms into organic molecules can alter their lipophilicity, solubility, metabolic stability, and

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• because of their low water solubility. The styrylpyridine derivatives 2a–g were irradiated in oxygen-saturated solutions in MeCN, H2O, MeOH, or MeCN/H2O with a high-pressure Hg lamp (λ > 220 nm), and the course of the photocyclization reaction was monitored by absorption spectroscopy (Figure 2). In

• S6A). Because of the low water solubility of the styrylpyridine derivatives 2a–g, solvent mixtures of MeCN/H2O or pure MeCN were used for the preparative photocyclization reactions (Scheme 3, cf. Supporting Information File 1, Figure S2C,D) to provide sufficient solubility of the substrates, as well

• low solubility of compound 2c in aqueous solutions, the former could not be irradiated in situ in the presence of DNA. Photoinduced DNA damage In first orienting experiments, the photoinduced DNA damage by benzo[c]quinolizinium derivatives was examined exemplarily with ligand 3f and plasmid DNA pBR322

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• ) Pd2dba2, P(t-Bu)3, CuI, THF, Et3N, rt. Synthesis of acetylenic scaffolds with IF as central core. *Not fully characterized due to poor solubility. Conditions: (a) Pd(PPh3)2Cl2, CuI, THF, Et3N, rt. Reduction of IF dione 1 to dihydro-IF 29. UV–vis absorption data of compounds in PhMe or CH2Cl2 at 25 °C

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• -solubilities. It is noteworthy that an AA derivative featuring three nonionic –O(CH2CH2O)2CH3 side-chains on the phenylene spacer is insoluble in water (see Figure S45 in Supporting Information File 1), emphasizing the importance of the hydrophilic pyridinium core for the observed water-solubility. Formation

• the employed PA-R side-chain, likely due to the difference in water-solubility of the corresponding amphiphiles. The efficiency was found to be in the order of PA-Im > PA-OH > PA-OCH3 >> PA-CH3, as judged by the guest absorbance at 525 nm (Figure 4c). Importantly, PA-OCH3, PA-OH, and PA-Im displayed

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• rapid and comparatively easy deduction of structural features with the only requirement being the molecule's solubility in deuterated solvents. Therefore, NMR spectroscopy is of ubiquitous presence in many disciplines today. At the same time, with the high throughput analysis of samples that has been a

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• solvents screened, 1,4-dioxane was found the best solvent in terms of yield of the target product, solubility of the reagents, and ease of separation of the product. Thus, the optimal conditions found were reacting amidine 1 with azide 2 in the presence of DBU in a 1:1:1 ratio in 1,4-dioxane at room

• of the substituents in azides 2 was observed. We assume the higher yield of pyrimidine containing triazoles 3a–k by their lower solubility in 1,4-dioxane compared with the solubility of azole containing compounds 3l–s in both 1,4-dioxane and ethanol. With regard to the scope of diaminoacrylonitriles

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• this way, the hydration product was not obtained. In addition to the different reactivity, due to the presence or not of chlorine in the para position of the phenyl group, the different physical state (liquid for 1m vs solid for 1n) and the possible different solubility in BMIm-BF4 at room temperature

• . Therefore, while confirming the presence of the adduct, we could not quantify it. The next choice was DBU (1,8-diazabicyclo[5,4,0]undec-7-ene). The DBU-BF3 adduct is reported to be very stable in water and in air and not subjected to hydrolysis [115]. The DBU solubility in BMIm-BF4 was confirmed by NMR

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• can be attributed to Clar's rule, which considers the increasing number of non-sextet rings throughout the acene series as a contributing factor (Figure 1) [5][6]. Numerous approaches have been developed to address the challenges arising from the instability and solubility issues encountered in acenes

• successfully obtained in 30% yield. In the final step, the target POA-type structure containing naphthazarin 69 was synthesized by aromatization under acidic conditions. The attempts to conduct complexation experiments using BF3·OEt2 to obtain a stable BF2 complex were unsuccessful, primarily due to solubility

• complexation step to isolate stable BF2 complex of 69, likely attributable to solubility issues encountered with substrate 69, prevented the incorporation of the acene backbone into the structure. Consequently, the anticipated red-shift in the absorption spectrum could not be observed as expected. Boron-doped

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• fullerenes act as anion–π catalyst without additional activating groups, usually a tethered base to inject a negative charge into the substrate directly on top of the catalytic π surface [69]. The tert-butyl esters in Bingel fullerene 31 serve only to improve solubility and are not expected to participate in

• were not fruitful, mostly due to poor solubility. Anion–π catalysis on carbon nanotubes With fullerenes confirmed as privileged scaffold for induced anion–π catalysis but higher oligomers inaccessible [12][67][80], the obvious next move was to switch to carbon nanotubes. Compared to the sixty free

Aromatic systems with two and three pyridine-2,6-dicarbazolyl-3,5-dicarbonitrile fragments as electron-transporting organic semiconductors exhibiting long-lived emissions

• Karolis Leitonas,
• Brigita Vigante,
• Dmytro Volyniuk,
• Audrius Bucinskas,
• Pavels Dimitrijevs,
• Sindija Lapcinska,
• Pavel Arsenyan and
• Juozas Vidas Grazulevicius

Beilstein J. Org. Chem. 2023, 19, 1867–1880, doi:10.3762/bjoc.19.139

• compounds 6–9 were confirmed by the spectral data and elemental analyses. Remarkably, despite a highly hindered structure, compound 9 exhibits good solubility in non-polar solvents. Photophysical properties The electronic structures of compounds 6–9 in the ground and excited states were investigated by

N-Boc-α-diazo glutarimide as efficient reagent for assembling N-heterocycle-glutarimide diads via Rh(II)-catalyzed N–H insertion reaction

• Grigory Kantin,
• Pavel Golubev,
• Alexander Sapegin,
• Alexander Bunev and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2023, 19, 1841–1848, doi:10.3762/bjoc.19.136

• , the proposed diazo reagent 4 possesses several drawbacks, primarily, insufficient stability during storage and comparatively low solubility in non-polar solvents, as well as complications when isolating it in a pure form. This study focuses on the development of a "diazo" technique to incorporate a

• simplified the process of isolating compound 5, as compared to the prior publication [26], and notably increased its stability. Furthermore, the solubility of the new diazo reagent in non-polar solvents, particularly DCM, was significantly improved, leading to a beneficial impact on the course of Rh(II

A novel recyclable organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen

• Gyula Dargó,
• Dóra Erdélyi,
• Balázs Molnár,
• Péter Kisszékelyi,
• Zsófia Garádi and
• József Kupai

Beilstein J. Org. Chem. 2023, 19, 1811–1824, doi:10.3762/bjoc.19.133

• the other components of the reaction mixture. The lipophilic O-alkylated gallic acid unit increases the solubility of the organocatalyst in less polar solvents, such as DCM or toluene but leads to the precipitation of the organocatalyst in polar solvents, including MeOH or MeCN. As a result, the

• addition of trans-β-nitrostyrene (12) and acetylacetone (13). Choosing the best solvent for the reaction is crucial, thus, solubility tests were carried out (Table 1). Since homogeneous catalysts usually exhibit higher activity and selectivity than their heterogeneous counterparts [27], our aim was to

• carry out the catalytic reaction homogeneously. The solubility of the lipophilic catalyst 2 was investigated in ten solvents with low polarity, including a new, bio-based polar aprotic solvent, MeSesamol [33]. The catalyst’s precipitation – which is necessary for its recycling – was tested by adding a

Selectivity control towards CO versus H₂ for photo-driven CO₂ reduction with a novel Co(II) catalyst

• Lisa-Lou Gracia,
• Philip Henkel,
• Olaf Fuhr and
• Claudia Bizzarri

Beilstein J. Org. Chem. 2023, 19, 1766–1775, doi:10.3762/bjoc.19.129

• complex obtainable via a straightforward synthesis, with improved solubility, concerning our previous Co(II) complexes [21]. Thus, the new Co(II) complex bears two 1-benzyl-4-(quinolin-2-yl)-1H-1,2,3-triazole (BzQuTr) units, that were obtained through a copper-catalyzed alkyne–azide cycloaddition (CuAAC

Unprecedented synthesis of a 14-membered hexaazamacrocycle

• Anastasia A. Fesenko and
• Anatoly D. Shutalev

Beilstein J. Org. Chem. 2023, 19, 1728–1740, doi:10.3762/bjoc.19.126

• with a noticeable increase in the macrocycle yield up to 41% (Table 1, entries 20 and 21). The extremely poor solubility of product 5 in most organic solvents allowed to purify it from all admixtures, including byproduct 6, by a single crystallization from boiling DMF. Thus, pure product 5 was prepared

• , intermediates A, C, D, and hydrazine. Figure 1 shows that the hydrazine-promoted transformation of pyrazolopyrimidine 8 into macrocycle 5 in MeOH is a thermodynamically favorable process. Moreover, the extremely low solubility of macrocycle 5 makes the dimerization of 8 even more preferable. It is noteworthy

Effects of the aldehyde-derived ring substituent on the properties of two new bioinspired trimethoxybenzoylhydrazones: methyl vs nitro groups

• Dayanne Martins,
• Roberta Lamosa,
• Talis Uelisson da Silva,
• Carolina B. P. Ligiero,
• Sérgio de Paula Machado,
• Daphne S. Cukierman and
• Nicolás A. Rey

Beilstein J. Org. Chem. 2023, 19, 1713–1727, doi:10.3762/bjoc.19.125

• species (ROS) in vitro, which may be another mechanism through which the compound exerts its protective effects in the brain. From a drug development perspective, however, INHHQ has some pharmacological limitations, such as low solubility and certain susceptibility to hydrolysis in a water-rich medium

Quinoxaline derivatives as attractive electron-transporting materials

• Zeeshan Abid,
• Liaqat Ali,
• Sughra Gulzar,
• Faiza Wahad,
• Raja Shahid Ashraf and
• Christian B. Nielsen

Beilstein J. Org. Chem. 2023, 19, 1694–1712, doi:10.3762/bjoc.19.124

• , wherein researchers substituted alkoxy chains to enhance solubility and difluoro groups to lower the highest occupied molecular orbital (HOMO) energy level. Qx-derived polymer acceptors have witnessed significant progress in recent years, driven by a contextual understanding of the major issues hindering

• morphology on Qx26 and Qx27, employing indacenodithiophene, Qx and rhodanine as donor, acceptor and end group, respectively. The incorporation of specific side chains facilitated improved thermal stability, solubility, and broad absorption spectra (300–750 nm), narrow bandgaps (1.68–1.74 eV) and PCEs in the

• electronics [51]. Hasegawa and colleagues focused on achieving air-stable n-channel conduction by synthesizing thiadiazole-fused quinoxalineimide derivatives, Qx47–Qx49. The team optimized the molecular packing and solubility by incorporating solubilizing N-substituted alkyl chains. The resulting molecules

A series of perylene diimide cathode interlayer materials for green solvent processing in conventional organic photovoltaics

• Kathryn M. Wolfe,
• Shahidul Alam,
• Eva German,
• Fahad N. Alduayji,
• Maryam Alqurashi,
• Frédéric Laquai and
• Gregory C. Welch

Beilstein J. Org. Chem. 2023, 19, 1620–1629, doi:10.3762/bjoc.19.119

• the previously reported cyanated N-annulated perylene diimide (CN-PDIN-H), the N-position was functionalized with a benzyl and pentafluorobenzyl group to make CN-PDIN-B and CN-PDIN-FB, respectively. The materials exhibit solubility in the green solvent, ethyl acetate, and thus were processed into thin

• -PDIN-H scaffold was functionalized with a benzyl (CN-PDIN-B) or pentafluorobenzyl group (CN-PDIN-FB). Addition of the benzyl and pentafluorobenzyl groups was to enhance solubility in green solvents, while nitrile functionalization was done to further stabilize the LUMO of the compounds. These materials

• cast from a solution at a concentration of 1 mg/mL in ethyl acetate, where a concentration of 1 mg/mL was used due to CN-PDIN-FB exhibiting a maximum solubility of 1.2 mg/mL (see below). The PDIN-B film has the highest absorbance of 0.037 at its λmax of 535 nm for the 0 → 0 transition and an onset of

Cyclodextrins permeabilize DPPC liposome membranes: a focus on cholesterol content, cyclodextrin type, and concentration

• Ghenwa Nasr,
• Hélène Greige-Gerges,
• Sophie Fourmentin,
• Abdelhamid Elaissari and
• Nathalie Khreich

Beilstein J. Org. Chem. 2023, 19, 1570–1579, doi:10.3762/bjoc.19.115

• internal cavity and a hydrophilic outer surface [1]. The common CDs are the native α-CD, β-CD, and γ-CD consisting of 6, 7, and 8 ᴅ-glucopyranose units, respectively. Due to their limited water solubility (especially β-CD), native CDs can be chemically or enzymatically modified (by e.g., alkylation

• , arylation, hydroxypropylation, amination, etherification, etc.) giving rise to synthetic CD derivatives with greater water solubility [2]. Thanks to their unique structure, CDs can offer exclusive advantages by allowing the entrapment of lipophilic molecules inside their inner cavities. This inclusion

• improves the chemical stability and aqueous solubility of the guest molecule and results in most of the cases in the formation of a water-soluble CD–guest complex [3]. Being recognized as non-toxic, biodegradable, and sustainable carriers, CDs have attracted wide interest as potential carriers in different

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• (cavity) and the other directional due to hydrogen bonds (hydroxy groups), leads to the formation of these complexes. Results and Discussion The addition of two equivalents of sec-amines to an ethanol solution of R[4]A results in the formation of a crystalline precipitate with limited solubility in non

• chains, complexes with 1:2 stoichiometry are formed. This stoichiometry is justified by calculations of the acidity of protons of hydroxy groups in the R[4]A molecule. These complexes are highly ionic because of their very low solubility in non-polar solvents. Complexes with higher stoichiometry are not

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• pyrazolone derivatives with N-thiophthalimides catalyzed by 1 mol % of chiral iminophosphorane organocatalyst was carried out under mild conditions [103]. Solvent control in the procedure can affect the yield of products due to the solubility of the catalysts. Various solvents, such as acetone, ethyl acetate