Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups

• Neda Rafieiolhosseini,
• Matthias Killa,
• Thorben Neumann,
• Niklas Tötsch,
• Jean-Noël Grad,
• Alexander Höing,
• Thies Dirksmeyer,
• Jochen Niemeyer,
• Christian Ottmann,
• Shirley K. Knauer,
• Michael Giese,
• Jens Voskuhl and
• Daniel Hoffmann

Beilstein J. Org. Chem. 2022, 18, 1322–1331, doi:10.3762/bjoc.18.137

• option to modulate, inhibit, or stabilize protein–protein interactions (PPI) is the use of specific supramolecular ligands [7][8]. One well-known example of efficient protein binders is the so-called guanidiniocarbonyl-pyrrole (GCP) developed 20 years ago by Schmuck et al. [9]. These compounds are known

• an ideal candidate to be used for protein recognition. In a previous study, GCP containing polycationic ligands for 14-3-3 proteins had a significant effect on PPIs [12][13]. Furthermore, a simple GCP derivative, GCP-Lys-OMe, was identified as the first binder for the specific binding area of the 14

• overcome this issue is to use fluorescence emission as a read-out tool, such as an emission “on” or “off” behavior [15]. Selective and sensitive fluorescent ligands have been proven to be essential tools for the study of biological systems by biosensing and imaging [16]. There is an increasing demand for

Cytochrome P450 monooxygenase-mediated tailoring of triterpenoids and steroids in plants

• Karan Malhotra and
• Jakob Franke

Beilstein J. Org. Chem. 2022, 18, 1289–1310, doi:10.3762/bjoc.18.135

• system as well as a cysteine thiolate ligand from the protein backbone (Figure 1B). The generally accepted catalytic cycle for hydroxylations is shown in Figure 1C. In the resting state A, the central ferric ion is coordinated by six ligands, four from the porphyrin ring system, one cysteine thiolate

Ferrocenoyl-adenines: substituent effects on regioselective acylation

• Mateja Toma,
• Gabrijel Zubčić,
• Jasmina Lapić,
• Senka Djaković,
• Davor Šakić and
• Valerije Vrček

Beilstein J. Org. Chem. 2022, 18, 1270–1277, doi:10.3762/bjoc.18.133

• applied to quantify the fraction of the defined sphere around a reaction center [46]. It was introduced for ligands on metals [47], but may be adapted to estimate the steric hindrance of substituents in different chemical environments (see Supporting Information File 1 for more details). As expected

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• (BINAP)-assisted hydrogenation with H2 pressure up to 50 bar was also found to be ineffective. By changing the metal complex to Rh(COD)2BF4, we successfully realized the saturation of the double bond. Chiral ligands (R)-BINAP (L1) and (R,R)-phenyl-BPE (L4) gave unsatisfactory selectivity (Table 2

Reductive opening of a cyclopropane ring in the Ni(II) coordination environment: a route to functionalized dehydroalanine and cysteine derivatives

• Oleg A. Levitskiy,
• Olga I. Aglamazova,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2022, 18, 1166–1176, doi:10.3762/bjoc.18.121

• , alanine, serine and cysteine derivatives are formed as an antibonding combination of the Ni dx²-y² orbital with the group orbitals of the ligands; the π* orbital of the imine and the π orbital of the phenylene fragments are also partially involved. Reduction occurs at similar potential values and is

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• challenging and often requires prefunctionalization of the substrate monomers, costly metal ligands, or tedious protection–deprotection steps [6][7][8][9]. With the advance of biosynthetic studies on natural products, a number of enzyme classes that are responsible for the dimer formation have been identified

Scope of tetrazolo[1,5-a]quinoxalines in CuAAC reactions for the synthesis of triazoloquinoxalines, imidazoloquinoxalines, and rhenium complexes thereof

• Laura Holzhauer,
• Chloé Liagre,
• Olaf Fuhr,
• Nicole Jung and
• Stefan Bräse

Beilstein J. Org. Chem. 2022, 18, 1088–1099, doi:10.3762/bjoc.18.111

• diversity of metal complexes incorporating 1,2,3-triazoles as ligands have been reported [16][17][18]. Triazole ligands with N-heterocycles such as Pyta (4-(2-pyridyl)-1,2,3-triazole) and related structures were employed to obtain novel metal complexes as catalysts [19][20] and imaging probes [21], as well

• confirmed via single crystal X-ray crystallography. Several other byproducts, such as the bistriazolo product were isolated (see Supporting Information File 1). The obtained triazoloquinoxaline and TIQ products are promising ligands for complexation with different metals. The formation of organometallic

• complexes is a well-established method to obtain interesting materials for catalysis [31][32][33] and optoelectronics [34][35], as well as for biological applications [36][37]. Therefore, the obtained triazole and TIQ products were employed to act as ligands in rhenium tricarbonyl complexes. These are

Synthesis of N-phenyl- and N-thiazolyl-1H-indazoles by copper-catalyzed intramolecular N-arylation of ortho-chlorinated arylhydrazones

• Yara Cristina Marchioro Barbosa,
• Guilherme Caneppele Paveglio,
• Claudio Martin Pereira de Pereira,
• Sidnei Moura,
• Cristiane Storck Schwalm,
• Gleison Antonio Casagrande and
• Lucas Pizzuti

Beilstein J. Org. Chem. 2022, 18, 1079–1087, doi:10.3762/bjoc.18.110

• '-dimethylethanolamine (DMEA) and trans-1,2-diaminocyclohexane (DACH) were evaluated as ligands (Table 1, entries 18 and 19). However, the yield was lower compared to that obtained with 1,10-phenanthroline (phen). Control experiments were performed without catalyst (Table 1, entry 20), base (Table 1, entry 21), or

Electrochemical formal homocoupling of sec-alcohols

• Kosuke Yamamoto,
• Kazuhisa Arita,
• Masashi Shiota,
• Masami Kuriyama and
• Osamu Onomura

Beilstein J. Org. Chem. 2022, 18, 1062–1069, doi:10.3762/bjoc.18.108

• ]. Such scaffolds are widely utilized as versatile building blocks in the synthesis of biologically active compounds [3][4][5][6][7], chiral auxiliaries [8][9], and chiral ligands [10][11][12][13]. Traditional pinacol coupling reactions are performed with a stoichiometric or even excess amount of low

First example of organocatalysis by cathodic N-heterocyclic carbene generation and accumulation using a divided electrochemical flow cell

• Daniele Rocco,
• Ana A. Folgueiras-Amador,
• Richard C. D. Brown and
• Marta Feroci

Beilstein J. Org. Chem. 2022, 18, 979–990, doi:10.3762/bjoc.18.98

• as ligands in organometallic catalysts [9] and as versatile organocatalysts [10] in a very wide range of organic reactions such as classical benzoin condensation, transesterification, acylation, Knoevenagel reaction, Claisen condensation etc. The electrochemical generation of carbenes from ILs avoids

Synthetic strategies for the preparation of γ-phostams: 1,2-azaphospholidine 2-oxides and 1,2-azaphospholine 2-oxides

• Jiaxi Xu

Beilstein J. Org. Chem. 2022, 18, 889–915, doi:10.3762/bjoc.18.90

• )aminoalkanoic acids 86 (Scheme 15) [35][36]. This is a convenient way to synthesize γ-phosphonolactams 85. They further extended their method to synthesize cyclic O,O- and O,S-bidentate ligands with a P–N–P backbone. The substitution reaction of 3-bromopropylamine hydrogen bromide (87) and chloroethoxyphosphine

Palladium-catalyzed solid-state borylation of aryl halides using mechanochemistry

• Koji Kubota,
• Emiru Baba,
• Tamae Seo,
• Tatsuo Ishiyama and
• Hajime Ito

Beilstein J. Org. Chem. 2022, 18, 855–862, doi:10.3762/bjoc.18.86

• various phosphine ligands [62] for this reaction (Table 1, entries 1–8). Interestingly, we found that tri-tert-butylphosphonium tetrafluoroborate (t-Bu3P·HBF4) provided the borylation product 3a in excellent yield (92%, Table 1, entry 1), with a small amount of the protonation product 4a (5%, entry 1

• 3). Reactions with DPEphos and XPhos, which are the optimal ligands for neat liquid conditions reported by Nechaev [15], also yielded only poor results (Table 1, entries 4 and 5). Other monophosphine ligands, such as SPhos, PCy3, and PAd3, did not improve the yield of 3a (Table 1, entries 6–8). The

Direct C–H amination reactions of arenes with N-hydroxyphthalimides catalyzed by cuprous bromide

• Dongming Zhang,
• Bin Lv,
• Pan Gao,
• Xiaodong Jia and
• Yu Yuan

Beilstein J. Org. Chem. 2022, 18, 647–652, doi:10.3762/bjoc.18.65

• constructing C–N bonds are in high demand in organic synthesis since nitrogen-containing organic compounds are widely used in biologically active substances [1], multifunctional materials [2][3], and metal ligands [4][5]. Among them, the synthesis of aromatic amines has been important to researchers in recent

Heteroleptic metallosupramolecular aggregates/complexation for supramolecular catalysis

• Prodip Howlader and
• Michael Schmittel

Beilstein J. Org. Chem. 2022, 18, 597–630, doi:10.3762/bjoc.18.62

• heteroleptic aggregates are quite different. While in the former often a step-by-step attachment of the different ligands to the metal centers under kinetic control is dominating, the formation of dynamic aggregates relies on effective self-sorting protocols under thermodynamic control [24]. In its initial

• , since a variety of heteroleptic aggregation protocols have been developed by Schmittel [37] (for copper(I), zinc(II), cadmium(II), mercury(II) ions) and Yoshizawa/Fujita [38] (for palladium(II) ion) that involve pyridine-derived ligands. Highly innovative are the approaches for terpyridine-based

• , respectively, was carried out with 5 via social self-sorting to form the Pd7 molecular cage 8 (Figure 2) as driven by the directionality of the donor nitrogen of the building ligands. The unique three-component Pd7 molecular boat has a proper internal nanocavity showing preferential affinity towards aromatic

The asymmetric Henry reaction as synthetic tool for the preparation of the drugs linezolid and rivaroxaban

• Martin Vrbický,
• Karel Macek,
• Jaroslav Pochobradský,
• Jan Svoboda,
• Miloš Sedlák and
• Pavel Drabina

Beilstein J. Org. Chem. 2022, 18, 438–445, doi:10.3762/bjoc.18.46

• highly efficient catalysts based on copper complexes of different types of chiral ligands, 2-(pyridin-2-yl)imidazolidine-4-ones (I–III), bis-oxazolines (IV–VII), or diamine (VIII) were chosen for the study (Figure 2). Furthermore, the modification of the structure of the prochiral aldehyde intermediates

• catalysts based on copper(II) complexes with chiral nitrogen ligands were chosen. Generally, chiral copper complexes possess many advantages valuable for the pharmaceutical industry. They exhibit low toxicity (compared to other metal-based complexes) and many of them exist in forms suitable for recycling

• enantioselectivity was achieved with the copper(II) complexes of ligands Ia, IIa, IIIa, and IV. Fortunately, these catalysts provided the R-enantiomer of nitroaldol 21 as the major product, which can be subsequently transformed to S-linezolid (1) (the active stereoisomer). On the other hand, the catalysts derived

Menadione: a platform and a target to valuable compounds synthesis

• Acácio S. de Souza,
• Ruan Carlos B. Ribeiro,
• Dora C. S. Costa,
• Fernanda P. Pauli,
• David R. Pinho,
• Matheus G. de Moraes,
• Fernando de C. da Silva,
• Luana da S. M. Forezi and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 381–419, doi:10.3762/bjoc.18.43

• ) complexes showing the best catalytic activities with high selectivity compared to the Pt(II) complex, leading to 95–99% conversion and 60–65% selectivity (Table 1, entry 12) [58]. Sönmez and co-workers applied mononuclear complexes of ruthenium(III), chromium(III), and iron(III) with Schiff base ligands as

Amamistatins isolated from Nocardia altamirensis

• Till Steinmetz,
• Wolf Hiller and
• Markus Nett

Beilstein J. Org. Chem. 2022, 18, 360–367, doi:10.3762/bjoc.18.40

• affinity, as observed for compound 2. This trend continues in 1, 3, and 4, each of which features only a single bidentate ligand group. Compound 6 possesses the least iron affinity with a DC50 value of 5008 ± 222 μM. The results show a clear correlation between the number of ligands in a molecule and its

A Se···O bonding catalysis approach to the synthesis of calix[4]pyrroles

• Qingzhe Tong,
• Zhiguo Zhao and
• Yao Wang

Beilstein J. Org. Chem. 2022, 18, 325–330, doi:10.3762/bjoc.18.36

• ]. Despite these significant advances, catalysis with chalcogen bonding interactions is still in its infancy and the development of new types of reactions is highly desirable. Calix[4]pyrrole derivatives have been widely used as transition metal ligands and functional materials [50][51][52][53]. Thus far

Site-selective reactions mediated by molecular containers

• Rui Wang and
• Yang Yu

Beilstein J. Org. Chem. 2022, 18, 309–324, doi:10.3762/bjoc.18.35

• ligands (Figure 7a). The normally used analogous smaller-sized host was assembled with naphthalene-walled ligands, which had been used widely in mediating various reactions, including dehydration reaction [65], aza-Darzens reaction [66], and reductive amination [67], etc. [28]. The anionic cage host

Unexpected chiral vicinal tetrasubstituted diamines via borylcopper-mediated homocoupling of isatin imines

• Marco Manenti,
• Leonardo Lo Presti,
• Giorgio Molteni and
• Alessandra Silvani

Beilstein J. Org. Chem. 2022, 18, 303–308, doi:10.3762/bjoc.18.34

• commonly utilized as key intermediates for the synthesis of boron-containing peptidomimetics, which have been demonstrated to be efficient covalent ligands and valuable protease inhibitors endowed with various biological activities [5][6]. Going on with our interest in the synthesis of 3,3-disubstituted

Recent developments and trends in the iron- and cobalt-catalyzed Sonogashira reactions

• Surendran Amrutha,
• Sankaran Radhika and
• Gopinathan Anilkumar

Beilstein J. Org. Chem. 2022, 18, 262–285, doi:10.3762/bjoc.18.31

• conditions [13]. This system is applicable to sterically hindered aryl iodides or substituted aryl iodides with terminal arylalkynes (Scheme 2). K3PO4 was the effective base for the reaction of 4-iodoacetophenone with phenylacetylene. Ligands such as DABCO and trans-1,2-diaminocyclohexane were also tested

• product yield was obtained. The ligands tested in the cross-coupling reaction were shown to have a dramatic impact on the yield of the final product. Electron-rich aryl iodides showed higher yields than electron-deficient ones. In addition, 2-thiophenyl iodide also showed good yields of the products with

• of the alkyl halide and C–H activation can be increased by the presence of active Lewis acid sites on the iron(III) nanoparticles. The scope for this catalytic system can be figured out by the presence of high temperature, high ligand concentration and activated ligands. Chen and co-workers

New advances in asymmetric organocatalysis

• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 240–242, doi:10.3762/bjoc.18.28

• undoubtedly the most efficient way to prepare chiral compounds that our society requires as medicines, materials, or crop protecting agents. Traditionally, enzymes and metal complexes with chiral ligands served as the main type of enantioselective catalysts. Even though small chiral organic compounds have

Anomeric 1,2,3-triazole-linked sialic acid derivatives show selective inhibition towards a bacterial neuraminidase over a trypanosome trans-sialidase

• Peterson de Andrade,
• Sanaz Ahmadipour and
• Robert A. Field

Beilstein J. Org. Chem. 2022, 18, 208–216, doi:10.3762/bjoc.18.24

• ) has also been introduced at C-2 of α-triazole-linked sialic acid derivatives modified at C-9 as ligands for the transmembrane glycoprotein CD22 [21]. In this sense, we have synthesised a small series of 1,2,3-triazole-linked sialic acid derivatives via copper-catalysed azide–alkyne cycloaddition

Diametric calix[6]arene-based phosphine gold(I) cavitands

• Gabriele Giovanardi,
• Andrea Secchi,
• Arturo Arduini and
• Gianpiero Cera

Beilstein J. Org. Chem. 2022, 18, 190–196, doi:10.3762/bjoc.18.21

• ][2][3]. In this context, phosphines represent the most exploited class of ligands in homogeneous catalysis [4]. Noteworthy, reason of their wide applicability is the possibility of controlling the steric and electronic properties by proper functionalizations, hence tuning the catalytic properties of

• gold(I) nuclei to the opposite sides of the macrocycle, offering them the possibility to approach the cavity, thus exerting any control over the catalytic manifold (Figure 1d). Results and Discussion Synthesis and characterization The synthesis of novel macrocyclic calix[6]arene ligands was first

Ready access to 7,8-dihydroindolo[2,3-d][1]benzazepine-6(5H)-one scaffold and analogues via early-stage Fischer ring-closure reaction

• Irina Kuznetcova,
• Felix Bacher,
• Daniel Vegh,
• Hsiang-Yu Chuang and
• Vladimir B. Arion

Beilstein J. Org. Chem. 2022, 18, 143–151, doi:10.3762/bjoc.18.15

• copper(II) complexes prepared revealed an enhanced aqueous solubility and bioavailability indeed, along with very high cytotoxicity [8][9][10][11][12][13][14][15][16][17][18][19][20][21]. Moreover, the metal-free ligands and copper(II) complexes derived from backbone D revealed cytotoxicity in the