Hoveyda–Grubbs catalysts with an N→Ru coordinate bond in a six-membered ring. Synthesis of stable, industrially scalable, highly efficient ruthenium metathesis catalysts and 2-vinylbenzylamine ligands as their precursors

• Kirill B. Polyanskii,
• Kseniia A. Alekseeva,
• Pavel V. Raspertov,
• Pavel A. Kumandin,
• Eugeniya V. Nikitina,
• Atash V. Gurbanov and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2019, 15, 769–779, doi:10.3762/bjoc.15.73

• the composition of the reaction mixtures by the GС–MS technique only (GC–MS was carried out using external calibration for CM and RCM reactions). The validity of quantitative GC–MS analysis was confirmed by additional LC–MS and 1H NMR analysis of selected reaction mixtures. At the beginning of this

• across olefins [56][57]. It is worth to note in the end of this part, that we did not detect formation of chlorine-containing products (molecular peaks with the isotopic distribution characteristic for chlorine were absent in GC–MS spectra). Conclusion The present work reports an efficient method for the

• 5. Reaction conditions and yields of the metathesis products. Supporting Information Supporting Information File 95: Experimental and analytical data. Supporting Information File 96: Copies of NMR spectra of synthesised compounds and selected GC–MS data of the metathesis products. Check-cif reports

Synthesis of the aglycon of scorzodihydrostilbenes B and D

• Katja Weimann and
• Manfred Braun

Beilstein J. Org. Chem. 2019, 15, 610–616, doi:10.3762/bjoc.15.56

• TraceGC Ultra (GC–MS). Column chromatography was performed with Fluka silica gel 60 (230–400 mesh) and thin-layer chromatography was carried out by using Merck TLC Silicagel 60F254 aluminium sheets. Tetrahydrofuran (THF) and toluene were refluxed under nitrogen over sodium wire and a small amount of

Selective benzylic C–H monooxygenation mediated by iodine oxides

• Kelsey B. LaMartina,
• Haley K. Kuck,
• Linda S. Oglesbee,
• Asma Al-Odaini and
• Nicholas C. Boaz

Beilstein J. Org. Chem. 2019, 15, 602–609, doi:10.3762/bjoc.15.55

• oxidation of di-benzylic C–H bonds mediated by iodate. NHPI-catalyzed oxidation of substrates containing primary and tertiary benzylic C–H bonds. aReaction performed using NaIO3 (1 mmol) at 100 °C for 18 h. Product detected using GC–MS. Competitive deuterium KIE for the oxidation of ethyl benzene by the

Chemical structure of cichorinotoxin, a cyclic lipodepsipeptide that is produced by Pseudomonas cichorii and causes varnish spots on lettuce

• Hidekazu Komatsu,
• Takashi Shirakawa,
• Takeo Uchiyama and
• Tsutomu Hoshino

Beilstein J. Org. Chem. 2019, 15, 299–309, doi:10.3762/bjoc.15.27

• trimethylchlorosilane and N,O-bis(trimethylsilyl)acetamide (10:1) was added to the residue, the solution was heated at 80 °C for 24 h. The reaction mixture was then analyzed by GC–MS, which showed m/z 332 as the parent ion [M+], demonstrating that two TMS molecules were attached (Supporting Information File 1, Figure

Volatiles from the hypoxylaceous fungi Hypoxylon griseobrunneum and Hypoxylon macrocarpum

• Jan Rinkel,
• Alexander Babczyk,
• Tao Wang,
• Marc Stadler and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2018, 14, 2974–2990, doi:10.3762/bjoc.14.277

• 10.3762/bjoc.14.277 Abstract The volatiles emitted by the ascomycetes Hypoxylon griseobrunneum and Hypoxylon macrocarpum (Hypoxylaceae, Xylariales) were collected by use of a closed-loop stripping apparatus (CLSA) and analysed by GC–MS. The main compound class of both species were polysubstituted benzene

• [11][12]. Fungal volatiles can be efficiently analysed by trapping, e.g., on charcoal filters with a closed-loop stripping apparatus (CLSA) that was developed by Grob and Zürcher [13], followed by filter extraction and GC–MS analysis of the obtained headspace extracts [14]. The unambiguous compound

• , and therefore it is mandatory for unambiguous structure elucidation to compare analytes that fall into this class to all the possible isomers. A similar problem can apply to the structural assignment of compounds with multiple stereocentres based on GC–MS data, because the various possible

N-Acylated amino acid methyl esters from marine Roseobacter group bacteria

• Hilke Bruns,
• Lisa Ziesche,
• Nargis Khakin Taniwal,
• Laura Wolter,
• Thorsten Brinkhoff,
• Jennifer Herrmann,
• Rolf Müller and
• Stefan Schulz

Beilstein J. Org. Chem. 2018, 14, 2964–2973, doi:10.3762/bjoc.14.276

• derivatives and analogs of NAMEs, namely N-acyl-2-aminobutyric acid methyl esters (NABME), N-acylglycine methyl esters (NAGME), N-acylvaline methyl esters (NAVME), as well as for the first time a methyl-branched NAME, N-(13-methyltetradecanoyl)alanine methyl ester. These compounds were detected by GC–MS

• them have been characterized so far [14][15][16][17][18]. Such signalling compounds as well as many other unknown metabolites often occur in small amounts, which renders trace detecting methods like GC/MS a suitable approach for their detection and structure elucidation, provided their polarity falls

• compounds proved to be either new NAMEs or constitute new classes of acylated amino acid methyl esters, derived from valine (NAVME), glycine (NAGME), or 2-aminobutyric acid (NABME). The identification of these compounds will be discussed based on the outlined approach including GC/MS analysis

MoO₃ on zeolites MCM-22, MCM-56 and 2D-MFI as catalysts for 1-octene metathesis

• Hynek Balcar,
• Martin Kubů,
• Naděžda Žilková and
• Mariya Shamzhy

Beilstein J. Org. Chem. 2018, 14, 2931–2939, doi:10.3762/bjoc.14.272

• cooling to 40 °C, the reactor was filled with Ar and neat 1-octene (1-octene/Mo ratio = 320) was added under stirring. The reaction progress was followed by GC analysis of reaction mixture samples taken at given intervals. Individual compounds were identified by GC/MS. A high-resolution gas chromatograph

• Agilent 6890 with a DB-5 column (length: 50 m, inner diameter: 320 μm, stationary phase thickness: 1 μm), equipped with a 7683 Automatic Liquid Sampler and a FID detector and GC/MS (ThermoFinnigan, FOCUS DSQ II single Quadrupole) were used. Conversions were calculated from the mass balance. A,B,C,D: XRD

Copper(I)-catalyzed tandem reaction: synthesis of 1,4-disubstituted 1,2,3-triazoles from alkyl diacyl peroxides, azidotrimethylsilane, and alkynes

• Muhammad Israr,
• Changqing Ye,
• Munira Taj Muhammad,
• Yajun Li and
• Hongli Bao

Beilstein J. Org. Chem. 2018, 14, 2916–2922, doi:10.3762/bjoc.14.270

• trapping reagent (tetramethylpiperdinyloxy, TEMPO) [38][39] to the standard reaction system, no product 3a was obtained; only the radical trapped product 4 was detected by GC–MS (Scheme 4a). To further investigate this phenomenon, we synthesized a substrate bearing a cyclopropylmethyl moiety, diacyl

Generation of 1,2-oxathiolium ions from (arysulfonyl)- and (arylsulfinyl)allenes in Brønsted acids. NMR and DFT study of these cations and their reactions

• Stanislav V. Lozovskiy,
• Alexander Yu. Ivanov,
• Olesya V. Khoroshilova and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2018, 14, 2897–2906, doi:10.3762/bjoc.14.268

• the corresponding thiochromenes, due to oligomerization under the harsh reaction conditions. Other allenes 2g,h gave the corresponding heterocycles 5 in very poor yields (<4%, by GC–MS and 1H NMR data). As it was mentioned above, unsubsituted allenes 2i,j did not react with TfOH at room temperature

Molecular iodine-catalyzed one-pot multicomponent synthesis of 5-amino-4-(arylselanyl)-1H-pyrazoles

• Camila S. Pires,
• Daniela H. de Oliveira,
• Maria R. B. Pontel,
• Jean C. Kazmierczak,
• Roberta Cargnelutti,
• Diego Alves,
• Raquel G. Jacob and
• Ricardo F. Schumacher

Beilstein J. Org. Chem. 2018, 14, 2789–2798, doi:10.3762/bjoc.14.256

• % yield. When we performed the reaction by using the benzoylacetonitrile derivative 1c substituted with a methoxy group, a lower isolated yield was observed (Table 2, entry 3). This may be associated with the high reactivity of 1c which produced many byproducts as observed by TLC and GC–MS analysis

• -dinitrophenylhydrazine was used, the expected pyrazole 4k was not detected by GC–MS analysis. (Table 2, entry 11). In addition, different diaryl diselenides 3b–e were studied to produce valuable 5-amino-4-(arylselanyl)-1H-pyrazoles 4l–o (Table 2, entries 12–15). In this case, it is possible to see that all diaryl

Synthesis of aryl sulfides via radical–radical cross coupling of electron-rich arenes using visible light photoredox catalysis

• Amrita Das,
• Mitasree Maity,
• Simon Malcherek,
• Burkhard König and
• Julia Rehbein

Beilstein J. Org. Chem. 2018, 14, 2520–2528, doi:10.3762/bjoc.14.228

• Data Centre. Acknowledgements A.D., M.M, J.R. and S.M. thank the Deutsche Forschungsgemeinschaft (GRK 1626 and Emmy-Noether grant, 251211948) for financial support. We thank Dr. Rudolf Vasold and Mrs. R. Hoheisel for GC–MS and electrochemical measurements.

Direct electrochemical generation of organic carbonates by dehydrogenative coupling

• Tile Gieshoff,
• Vinh Trieu,
• Jan Heijl and
• Siegfried R. Waldvogel

Beilstein J. Org. Chem. 2018, 14, 1578–1582, doi:10.3762/bjoc.14.135

• was most likely and quinoide products were generated due to water traces in the commercially available acetonitrile. In order to investigate the potential functionalization of a side chain, xylene was tested. In contrast to benzene, traces of two compounds were detected by GC–MS analysis with a

• studies on a potential scope of aromatic compounds, the symmetric 1,3,5-threefold substitution pattern showed best selectivity according to GC–MS measurements. Since the nucleophilic attack is controlled by sterics, non-symmetric substitution patterns gave weak signals and product mixtures. Generally, the

Acyl-group specificity of AHL synthases involved in quorum-sensing in Roseobacter group bacteria

• Lisa Ziesche,
• Jan Rinkel,
• Jeroen S. Dickschat and
• Stefan Schulz

Beilstein J. Org. Chem. 2018, 14, 1309–1316, doi:10.3762/bjoc.14.112

• GC/MS-based method using XAD-16 as adsorbent in marine broth, developed by us [8]. The bacteria were isolated from different habitats: D. shibae DFL-12 was isolated from the dinoflagellate Prorocentrum lima [29], P. inhibens T5 was collected from a water sample of the German Wadden Sea [30], P

• concomitantly transfers any bound or free fatty acid into its methyl ester (FAME) [33]. The extracts were analyzed by GC/MS (Figure 1). Short and long FAMEs were detected, ranging from methyl octanoate to methyl icosanoate (Table 2). The three Phaeobacter strains produced identical fatty acids. We identified

• determined using GC/MS [9][10][32]. Coenzyme A or abbreviated ACP analogs, N-pantothenoylcysteamine thioesters of fatty acids (PCEs) were synthesized (Scheme 2) to serve as substrate substitutes for the native precursors. Calcium pantothenate (6) was protected with acetone forming acid 7 that was transformed

Volatiles from three genome sequenced fungi from the genus Aspergillus

• Jeroen S. Dickschat,
• Ersin Celik and
• Nelson L. Brock

Beilstein J. Org. Chem. 2018, 14, 900–910, doi:10.3762/bjoc.14.77

• Abstract The volatiles emitted by agar plate cultures of three genome sequenced fungal strains from the genus Aspergillus were analysed by GC–MS. All three strains produced terpenes for which a biosynthetic relationship is discussed. The obtained data were also correlated to genetic information about the

• from cantaloupe a structural revision to the Z stereoisomer is proposed. Ethyl (Z)-hept-4-enoate also occurs in Aspergillus clavatus and was identified by synthesis of an authentic standard. Keywords: Aspergillus; GC–MS; genomics; terpenes; volatiles; Introduction Ascomycete fungi are a highly

• grown on medium 129 were collected on charcoal filters with a closed loop stripping apparatus (CLSA) [23]. After solvent extraction (CH2Cl2) of the filters the extracts were analysed by GC–MS and compounds were identified by comparison of the recorded EI mass spectra to mass spectral libraries and of

Volatiles from the xylarialean fungus Hypoxylon invadens

• Jeroen S. Dickschat,
• Tao Wang and
• Marc Stadler

Beilstein J. Org. Chem. 2018, 14, 734–746, doi:10.3762/bjoc.14.62

• The volatiles emitted by agar plate cultures of the xylarialean fungus Hypoxylon invadens were investigated by use of a closed loop stripping apparatus in combination with GC–MS. Several aromatic compounds were found that could only be identified by comparison to all possible constitutional isomers

• α-cadinene (5). The same problem applies to the unambiguous identification of regioisomers of aromatic compounds. We have recently reported on the GC–MS-based identification of the fungal volatiles 1-chloro-3,4-dimethoxybenzene (6) and 1,3-dichloro-4,5-dimethoxybenzene (7) from an endophytic

• unambiguous GC–MS-based structural assignment was only possible by comparison to all regioisomers with different substitution patterns at the benzene ring. Results and Discussion The volatiles released by agar plate cultures of Hypoxylon invadens MUCL 54175 were collected through the CLSA headspace method and

Stepwise radical cation Diels–Alder reaction via multiple pathways

• Ryo Shimizu,
• Yohei Okada and
• Kazuhiro Chiba

Beilstein J. Org. Chem. 2018, 14, 704–708, doi:10.3762/bjoc.14.59

• the reaction was indeed stepwise. When the reaction was carefully monitored by gas chromatography–mass spectrometry (GC–MS), we found that an adduct was generated in the early stage that was not the Diels–Alder product 3. Therefore, we intentionally stopped the reaction after 0.1 F/mol of electricity

• development in our laboratory. GC–MS Monitoring of the oxidative SET-triggered reaction of aryl vinyl ether 1c. Radical cation Diels–Alder reaction of trans-anethole [17]. Radical cation Diels–Alder reactions of aryl vinyl ether and sulfides [17][25]. Radical cation Diels–Alder reaction of aryl vinyl ether (1

Investigating radical cation chain processes in the electrocatalytic Diels–Alder reaction

• Yasushi Imada,
• Yohei Okada and
• Kazuhiro Chiba

Beilstein J. Org. Chem. 2018, 14, 642–647, doi:10.3762/bjoc.14.51

• spectrometry (GC–MS, Figure 2). Surprisingly, we found that only 0.015 F/mol was sufficient to complete the reaction and the Diels–Alder adduct 3 was obtained in 98% yield, suggesting that the current efficiency was up to 6533%. To the best of our knowledge, this is one of the highest current efficiencies in

• electrochemical synthesis in that one electron can run the radical cation chain process up to 65 times. GC–MS monitoring showed a sigmoidal curve with an induction period. The monitoring was carried out in the presence of a large excess (10 equivalents) of isoprene (2), which might follow pseudo-first order

• [33]. The reaction was monitored by GC–MS and also showed a sigmoidal curve (Figure 4). Conclusion In conclusion, we have optimized the reaction conditions for the electrocatalytic Diels–Alder reaction in order to improve the turnover number of the radical cation chain process, which resulted in a

Diastereoselective auxiliary- and catalyst-controlled intramolecular aza-Michael reaction for the elaboration of enantioenriched 3-substituted isoindolinones. Application to the synthesis of a new pazinaclone analogue

• Romain Sallio,
• Stéphane Lebrun,
• Frédéric Capet,
• Francine Agbossou-Niedercorn,
• Christophe Michon and
• Eric Deniau

Beilstein J. Org. Chem. 2018, 14, 593–602, doi:10.3762/bjoc.14.46

• Ministère de l’Enseignement Supérieur et de la Recherche, the Région Hauts-de-France and the FEDER are acknowledged for supporting and funding partially this work. Mrs Céline Delabre (UCCS) is thanked for GC–MS and HPLC analyses. Dr M. Kouach and Ms A. Descat (Univ. Lille) are thanked for HRMS analyses. Ms

High-yielding continuous-flow synthesis of antimalarial drug hydroxychloroquine

• Eric Yu,
• Hari P. R. Mangunuru,
• Nakul S. Telang,
• Caleb J. Kong,
• Jenson Verghese,
• Stanley E. Gilliland III,
• Saeed Ahmad,
• Raymond N. Dominey and
• B. Frank Gupton

Beilstein J. Org. Chem. 2018, 14, 583–592, doi:10.3762/bjoc.14.45

• found to give near quantitative conversion. The reaction profile was monitored using GC–MS and 1H NMR – no intermediates were observed under these conditions. Optimization of the flow rate with 55% hydroiodic acid (Table 1, entries 6–8) revealed that a flow rate of 1.0 mL min−1 (tR = 5 min) gave an

• (residence time, tR = 5 min) at 80 °C. The completion of the reaction was monitored using GC–MS. Complete consumption of starting material was observed. The reaction mixture was cooled to room temperature and sodium hydrogencarbonate was added until neutralized at pH 7. The crude mixture was extracted with

Functionalization of N-arylglycine esters: electrocatalytic access to C–C bonds mediated by n-Bu₄NI

• Mi-Hai Luo,
• Yang-Ye Jiang,
• Kun Xu,
• Yong-Guo Liu,
• Bao-Guo Sun and
• Cheng-Chu Zeng

Beilstein J. Org. Chem. 2018, 14, 499–505, doi:10.3762/bjoc.14.35

• gives imine intermediate product 5, which was detected by TLC and GC–MS. Moreover, when separated synthesized 5 was subjected to react with 2a, the corresponding product 3aa was isolated in 89% yield. These control experiments indicate that 5 is a possible reaction intermediate. Based on these control

Volatiles from the tropical ascomycete Daldinia clavata (Hypoxylaceae, Xylariales)

• Tao Wang,
• Kathrin I. Mohr,
• Marc Stadler and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2018, 14, 135–147, doi:10.3762/bjoc.14.9

• /bjoc.14.9 Abstract The volatiles from the fungus Daldinia clavata were collected by use of a closed-loop stripping apparatus and analysed by GC–MS. A few compounds were readily identified by comparison of measured to library mass spectra and of retention indices to published data, while for other

• included in the Xylariaceae, but have recently been reassigned to the Hypoxylaceae [16]. Since many of the compounds observed during GC–MS analyses in the volatile profiles of these fungi could not be identified with confidence in the latter study, we have selected some of these strains for intensified

• unambiguous verification of the suggested structures. Volatiles from Daldinia clavata identified by GC–MS A representative total ion chromatogram of a CLSA headspace extract from D. clavata is shown in Figure 1. Several of the emitted volatiles were readily identified from their mass spectra and retention

Halogen-containing thiazole orange analogues – new fluorogenic DNA stains

• Aleksey A. Vasilev,
• Meglena I. Kandinska,
• Stanimir S. Stoyanov,
• Stanislava B. Yordanova,
• David Sucunza,
• Juan J. Vaquero,
• Obis D. Castaño,
• Stanislav Baluschev and
• Silvia E. Angelova

Beilstein J. Org. Chem. 2017, 13, 2902–2914, doi:10.3762/bjoc.13.283

• and the fluorescence spectra on a Cary Eclipse fluorescence spectrophotometer (Varian, Australia). The GC–MS analysis was performed on a gas chromatograph HP 6890 GC System Plus coupled to a mass selective detector HP 5973 MSD. The mass selective detector operated in electron impact ionization mode at

• , 880, 765, 725, 625 cm−1; GC–MS m/z: 324 (100%, [M+] − CH3); elemental analysis (%) for C19H16ClIN2S Mw = 466.77, calcd for N, 6.00; found: 5.57. Procedures B1 and B2: 2a (1 mmol) and 4a (1 mmol) were finely ground together and the mixture was transferred to a 50 mL reaction flask. Distilled water (15

• , 1450, 1370, 1315, 1110, 974, 780, 750, 725 cm−1; GC–MS (m/z): 324 (100%, [M+] − CH2Ph); elemental analysis (%) for C25H20ClIN2S Mw = 542.86, calcd for N 5.16; found: 5.53. 2-((1-Benzyl-7-(trifluoromethyl)quinolin-4(1H)-ylidene)methyl)-3-methylbenzo[d]thiazol-3-ium iodide (5b): Yield 68%; mp 284–285 °C

CF₃SO₂X (X = Na, Cl) as reagents for trifluoromethylation, trifluoromethylsulfenyl-, -sulfinyl- and -sulfonylation. Part 1: Use of CF₃SO₂Na

• Hélène Guyon,
• Hélène Chachignon and
• Dominique Cahard

Beilstein J. Org. Chem. 2017, 13, 2764–2799, doi:10.3762/bjoc.13.272

• -unsaturated ketones 58 (Scheme 31b). Benzophenone (BP) or anthracene-9,10-dione (AQ) were used as sensitizers under irradiation using a UV lamp at 280 nm. A radical pathway that involves CF3• was established after a negative reaction in the presence of TEMPO (TEMPO–CF3 was detected by GC–MS). An example of

Is the tungsten(IV) complex (NEt₄)₂[WO(mnt)₂] a functional analogue of acetylene hydratase?

• Matthias Schreyer and
• Lukas Hintermann

Beilstein J. Org. Chem. 2017, 13, 2332–2339, doi:10.3762/bjoc.13.230

• experiment, 1-octyne and complex 1 (2 mol %) were heated at 50 °C in aqueous acetone. In situ analysis of the reaction mixture after 20 hours by GC–MS failed to reveal any new product next to unchanged 1-octyne. We have recently developed standardized screening procedures for detecting alkyne hydration

Mechanically induced oxidation of alcohols to aldehydes and ketones in ambient air: Revisiting TEMPO-assisted oxidations

• Andrea Porcheddu,
• Evelina Colacino,
• Giancarlo Cravotto,
• Francesco Delogu and
• Lidia De Luca

Beilstein J. Org. Chem. 2017, 13, 2049–2055, doi:10.3762/bjoc.13.202

• selectively that it was complete within just a few minutes. The progress of the reaction was monitored by TLC and GC–MS analysis until the completion of the reaction. The experimental protocol involved two stages, namely the preparation of the catalytic system and the final oxidation reaction. During the

• smoothly reached completion in only 14 minutes (two cycles of 7 minutes each). GC–MS analysis of the crude reaction mixture only showed the presence of the desired aromatic aldehyde, indicating that over-oxidation did not occur (Scheme 2, right side). Prolonged milling did not result in the formation of

• further purified via filtering on a short pad of silica gel to give final aldehyde 2a with a higher degree of purity (>95% as determined by GC–MS analysis). Since most common alcohols are, unfortunately, liquids at room temperature, their mechanical activation requires using a versatile dispersant