Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• ]. After the determination of the molecular structure of indigo in 1883, various precursors such as isatin (1), cinnamic acid (2), 2-nitrobenzaldehyde (3), aniline (4), 2-aminobenzoic acid (5), phenylglycine (6), 1-(1H-indol-1-yl)ethan-1-one (7) and indole (8) have been used in the synthesis (Figure 1) [4

• accelerated in the presence of acid. In 2017 and 2022, Hecht, Jacquemin and co-workers successfully synthesized a range of N,N'-disubstituted indigos, including N,N'-dialkyl derivatives, using novel approaches and investigated their photophysical properties, in particular, the thermal half-lives and the ratio

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• mixture which were then purified to give the desired α-anomers. Thioglycosides 1c, 1d, and 1f were isolated purely as β-anomers due to anchimeric assistance from the C2 N-acetyl or N-Troc groups. In glycosyl acceptors, the first amino acid of the lipid II pentapeptide, Ala, was incorporated as a 2

• -(phenylsulfonyl)ethyl ester, as previously reported by Saha and co-workers [44]. This modification prevents a deleterious side reaction occurring, wherein during glycosylation, muramic acid esters undergo a 6-exo-trig cyclization with the 4-OH group. Comprehensive experimental protocols detailing the preparation

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

• over 50% of agricultural chemicals contain at least one fluorine atom, among which architectural motifs containing fluorine and amino acid residues are a fast-growing segment of modern pharmaceuticals [10][11][12][13]. Fluoroalkyldiazo compounds belong to the most versatile and valuable reagents in

• example, Wan and co-workers developed a cascade reaction of α-diazo esters, nitriles, and carboxylic acids via the generation of nitrile ylides and Mumm rearrangement affording unsymmetric diacyl α-amino acid esters as products (Scheme 1a) [39]. In 2017, Zhang, Hu, and co-workers developed a Cu-catalyzed

• side reactions was carried out with benzyl 3-amino-4,4,4-trifluorobutanoate (1a) and benzoic acid (3a) as model substrates. The initial reaction of amine 1a and acid 3a in acetonitrile in the presence of diazotization reagent tert-butyl nitrite with CuI (10 mol %) as catalysts for 2.5 h at room

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• synthesis of optically active difluoro-substituted indoline derivatives starting from the corresponding 3H-indoles by chiral phosphoric acid-catalyzed transfer hydrogenation was developed. Using Hantzsch ester as the hydrogen source under mild reaction conditions, the target products can be obtained with

• excellent yield and enantioselectivity. Keywords: asymmetric organocatalysis; chiral Brønsted acid; 3,3-difluoroindoline; Hantzsch ester; transfer hydrogenation; Introduction The introduction of fluoro atoms into organic molecules can alter their lipophilicity, solubility, metabolic stability, and

• organocatalysis using chiral phosphoric acids has also been studied (Scheme 1b) [26][27][28]. In 2010, Magnus Rueping and his co-workers developped an enantioselective Brønsted acid-catalyzed transfer hydrogenation of 3H-indoles [29]. In 2020, Song and Yu successfully applied a new chiral Brønsted acid

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• either 1,2-dibromobenzene or 2-bromophenylboronic acid. The 10,11-dihydro-5H-dibenzo[b,e][1,4]diazepinone could be synthezised in good yield using a sequential catalytic procedure, using both C–L and B–H approaches. Gratifingly, the use of the C–L reaction was more impressive, and afforded the

• formation of DBDAP, prompted us to test alternative CO surrogates. When the reaction was performed using Co2(CO)8 (0.3 equiv) in the presence of DBU, the intermediate 3a was isolated in 35% yield, but again no DBDAP 4 was obtained (entry 8, Table 1). Formic acid, an effective CO surrogate [20][22], was also

• performing the reaction of o-phenylenediamine (1a) with 2-bromophenylboronic acid (7) in the presence of Cu(OAc)2, Et3N as base in DCM at 50 °C (entry 1, Table 4), and gratifingly under these conditions, the reaction afforded compound 3a in 48% yield. The Chan–Lam couplings were undertaken under an aerobic

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• , Russian Federation 10.3762/bjoc.20.18 Abstract The development of new methods for chemical glycosylation commonly includes comparison of various glycosyl donors. An attempted comparison of chemical properties of two sialic acid-based thioglycoside glycosyl donors, differing only in the substituent at O-9

• and straightforward as it is usually considered. Keywords: concentration; glycosylation; protecting groups; reactivity; sialic acids; stereoselectivity; Introduction Glycoconjugates containing sialic acid occur on the surface of all cell types in a variety of organisms. They participate in a broad

• and conjugates are important for advancing glycobiology [12][13] and glyco-medicine [14][15]. However, the reliable installation of sialic acid residues in oligosaccharides is a rather difficult issue and poor predictability remains characteristic of the sialylation reaction [16][17][18][19][20][21

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• synthesis starting from unprotected N-acetylgalactosamine and a Lewis acid-promoted reaction starting from per-acetylated galactosamine were initially tested. As reported [11], the Fischer synthesis gives low yields and α-selectivity. The Lewis acid-promoted reaction, which had worked well to produce β

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• one-pot transformation from readily available benzyl(prenyl)malonate substrates. After the photooxygenation of the prenyl moiety, the resulting hydroperoxide was directly engaged in a Hock cleavage by adding a Lewis acid. The presence of an aromatic nucleophile in the reaction mixture and that of a

• –Crafts reactions, rather than an oxocarbenium. Keywords: 1-aryltetralines; Friedel–Crafts reaction; Hock rearrangement; oxidative cleavage; tandem reactions; Introduction The Hock cleavage [1] consists in the acid-catalyzed rearrangement of organic hydroperoxides, leading to the oxidative cleavage of a

• ), successively involving a Schenck-ene photooxygenation of an alkene A, an acid-catalyzed Hock cleavage of hydroperoxide B generating an aldehyde derivative C, and an acid-catalyzed Friedel–Crafts reaction in the presence of an aromatic nucleophile leading to D [17]. In principle, a second Friedel–Crafts

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• brominated imides, such as N-bromosuccinimide (NBS), N-bromosaccharin (NBSA), tribromoisocyanuric acid (TBCA), 1,3-dibromo-5,5-dimethylhydantoin (DBDMH), and so on (Scheme 1, reaction 2) [21][22][23][24]. However, reports on the bromination of C5–H of 8-aminoquinolines employing acyl bromides, alkyl bromides

• trimethylgallic acid bearing multiple methoxy groups afforded the desired product 3ma in excellent yield (99%). Noteworthy to mention, substrates containing naphthalene, furan, and thiophene rings also efficiently underwent reaction leading to the quinoline C5-brominated products in excellent yields (3na–pa). In

• contrast, side products, substituted on the naphthalene, furan, or thiophene ring were not detected. This protocol was also compatible with linear, branched, and cyclic aliphatic acid-derived substrates (3qa–va). Surprisingly, small ring-containing substrates displaying significant ring strain were stable

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• were drilled in the shaft. All 3D-printed parts were printed with a 3D printer (Pro2 Plus, Raise3D) using a polylactic acid (PLA) filament. The 3D printer setting is shown in Supporting Information File 1, Table S1. As light source 365 nm UV LEDs (Luminus SST-10-UV, Luminus Devices, Inc.) were used

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• alkylphosphine, an aldehyde and an alkyne [32]. Another example resulting from phosphine addition to α,β-unsaturated aldehydes was published shortly afterwards [33]. Phosphonium carboxylate zwitterions have been obtained by the reaction of phosphines with acrylic acid [8] and ortho-carboxylated arylphosphines

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• mL) was added and the resulting solution was stirred for additional 5 min. Then, acetic acid (34 µL) was added to the reaction mixture, the formed precipitate was filtered off, washed with water, and dried in a desiccator over P4O10. Method B. Amidine 1 (0.5 mmol) was added into a solution of sodium

• cooling was removed. The reaction mixture was allowed to warm to ambient temperature under stirring and water (8 mL) was added to the mixture. The resulting solution was stirred for 5 min, after which acetic acid (34 µL) was added. The formed precipitate was filtered off, washed with water, and dried in a

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• % yields. para-Amino- and boronic acid-substituted benzamides did not react. While meta-bromo-substituted benzamide gave 2j in 84% yield, ortho-bromination resulted in a diminished yield of 2k (55%). We obtained 3,5-disubstituted N-acyl carbazoles 2l and 2m in 91% and 88% yields. The same disubstitution

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• , Bunkyo-ku, Tokyo 113-8657, Japan 10.3762/bjoc.20.1 Abstract Recently, we identified the biosynthetic gene cluster of avenalumic acid (ava cluster) and revealed its entire biosynthetic pathway, resulting in the discovery of a diazotization-dependent deamination pathway. Genome database analysis revealed

• the presence of more than 100 ava cluster-related biosynthetic gene clusters (BGCs) in actinomycetes; however, their functions remained unclear. In this study, we focused on an ava cluster-related BGC in Kutzneria albida (cma cluster), and revealed that it is responsible for p-coumaric acid

• biosynthesis by heterologous expression of the cma cluster and in vitro enzyme assays using recombinant Cma proteins. The ATP-dependent diazotase CmaA6 catalyzed the diazotization of both 3-aminocoumaric acid and 3-aminoavenalumic acid using nitrous acid in vitro. In addition, the high efficiency of the CmaA6

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• 1881, Kucherov identified mercury(II) salts in sulfuric acid as efficient promoters of the hydration of alkynes and this catalyst system has found applications in industrial scale synthesis [10]. However, the toxicity and the environmental issues associated with the use of mercury-based compounds have

• examples of the hydration reaction of alkynes carried out in ILs. In one case, a dicationic IL, containing sulfuric acid as catalyst, was used as reaction medium to carry out the hydration of different alkynes under mild conditions (40–60 °C, 0.5–1 h) [84]. In a second case, different Brønsted acid ionic

• demonstrated the possibility to efficiently apply the electrogenerated BF3 in IL for different classical acid-catalysed reactions [102][103]. Specifically, electrogenerated BF3 in 1-butyl-3-methylimidazolium tetrafluoroborate (BMIm-BF4) appears as an alternative and less dangerous source of BF3 compared to

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• failure sequences 4 and other impurities were then washed away using aqueous solutions including mildly basic solutions. These washes might also remove N,N-dimethylacrylamide added to ODNs via Michael addition. The full-length ODN 6 was cleaved from the polyacrylamide gel (5) using 80% acetic acid (Scheme

•  1). Because depurination is less likely for deprotected ODNs, and the conditions are widely used for detritylation after RP HPLC, ODN damage in this step is unlikely or negligible. The purified ODNs, 399 and 401 nt, were each extracted from their gel. To remove residual acetic acid, the ODNs were

Aldiminium and 1,2,3-triazolium dithiocarboxylate zwitterions derived from cyclic (alkyl)(amino) and mesoionic carbenes

• Nedra Touj,
• François Mazars,
• Guillermo Zaragoza and
• Lionel Delaude

Beilstein J. Org. Chem. 2023, 19, 1947–1956, doi:10.3762/bjoc.19.145

• mesitylamine with sodium nitrite and acetic acid followed by a substitution of the intermediate diazonium salt with sodium azide [68]. All our attempts to prepare 2-azido-1,3-diisopropylbenzene along the same lines failed. Nevertheless, its in situ formation in the presence of phenylacetylene led to the

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• polysaccharides, with repeating disaccharide units comprised of a hexuronic acid (or galactose in keratan sulfate) and a hexosamine (N-acetylglycosamide, GlcNAc or N-acetylgalactososamide, GalNAc) throughout a regular alternation of 1→4 and 1→3-glycosidic linkages [1][2][3]. GAGs are mainly located on the cell

• proteins or nucleic acids, GAGs are constantly altered by processing enzymes and thus they vary greatly in molecular mass, disaccharide unit composition, and sulfation. Based on their core structure they are categorized into six different classes, viz. heparan sulfate (HS), heparin (HP), hyaluronic acid

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• are in situ formed from 23, resulting in the formation of symmetric polycyclic structures 24a and 24b. These isomers obtained as a mixture are then subjected to treatment with p-TsOH in acetic acid, without the need for further purification, to yield the desired products 25a and 25b in 71 and 42

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• ][56][57]. Anion–π catalysis on fullerenes has been introduced in 2017 [12]. Fullerene anion–π catalysts were developed with the benchmark reaction introduced two years earlier (Figure 2) [2]. In this reaction, at the beginning of all biosynthesis, finetuned malonic acid half thioesters 4 [58][59][60

• to C60 fullerenes [12]. These amines function as bases, their position next to the aromatic surface is essential to turn on anion–π interactions as soon as substrate 4 is deprotonated. Fullerene derivatization with the Bingel reaction installs a cyclopropane that continues with one or two acid

Controlling the reactivity of La@C₈₂ by reduction: reaction of the La@C₈₂ anion with alkyl halide with high regioselectivity

• Yutaka Maeda,
• Saeka Akita,
• Mitsuaki Suzuki,
• Michio Yamada,
• Takeshi Akasaka,
• Kaoru Kobayashi and
• Shigeru Nagase

Beilstein J. Org. Chem. 2023, 19, 1858–1866, doi:10.3762/bjoc.19.138

• not be eluted under typical fullerene HPLC separation conditions, trifluoroacetic acid was added to the reaction mixture. Notably, La@C2v-C82 is produced after the addition of trifluoroacetic acid to the La@C2v-C82 anion [20]. After removing the solvent under vacuum, the electrolyte was removed by

• the next step. Reaction of the La@C2v-C82 anion with 1a 1a was added to 12 mL of the La@C2v-C82 anion (0.89 × 10−6 mol) ODCB solution. The solution was degassed using freeze-pump-thaw cycles. The solution was then heated at 110 °C for 2 h. After the reaction, dichloroacetic acid was added to recover

• treated with dichloroacetic acid before injection. HPLC profiles (Buckyprep column (⌀ = 4.6 × 250 mm); eluent, toluene; flow rate, 1.0 mL/min; UV detector, 330 nm.) and MALDI–TOF mass spectra (matrix: dithranol, positive mode) of 2a–5a. Absorption spectra of 2, 3, 4, and 5 in CS2 and absorption spectra of

Thienothiophene-based organic light-emitting diode: synthesis, photophysical properties and application

• Recep Isci and
• Turan Ozturk

Beilstein J. Org. Chem. 2023, 19, 1849–1857, doi:10.3762/bjoc.19.137

• polyphosphoric acid (PPA) in refluxing chlorobenzene to give 3 (TT) in 86% yield. The brominated TT 4 was obtained through selective monobromination of compound 3 using NBS at −10 °C in DMF in 88% yield. The boronated triphenylamine 6 was constructed in a one-pot two-step reaction in 77% yield, by lithiation of

• nitrogen flow. Materials 3-Bromothiophene (97%, Across), 2-bromo-4′-methoxyacetophenone (97% Merck), N-bromosuccinimide (Sigma-Aldrich), polyphosphoric acid (PPA, 115% H3PO4 basis, Sigma-Aldrich), n-butyllithium (2.5 M in hexanes, Sigma-Aldrich), sodium sulfate (Merck), 4-bromotriphenylamine (Sigma-Aldrich

N-Boc-α-diazo glutarimide as efficient reagent for assembling N-heterocycle-glutarimide diads via Rh(II)-catalyzed N–H insertion reaction

• Grigory Kantin,
• Pavel Golubev,
• Alexander Sapegin,
• Alexander Bunev and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2023, 19, 1841–1848, doi:10.3762/bjoc.19.136

• at the α-position have not yet been studied. Typically, two primary strategies are employed to build an N-heterocycle-glutarimide diad. The first involves assembling a heterocyclic fragment utilizing glutamic acid imide (2, Scheme 1, route A), while the second involves alkylating NH-heterocycle with

• -phenylpyrazolin-3-one, an exceptionally low conversion of the starting heterocycle was observed. In the next step, we have demonstrated the possibility of removing the protective Boc group under mild conditions without acid or base catalysis (Scheme 4). Deprotection occurs in high, near quantitative yields

• diazocarbonyl reagent is presented for the first time. The protective group is removed without acid catalysis with near quantitative yields. New benzotriazole derivatives containing functional groups capable of participating in the subsequent modification for linker attachment to assemble the PROTAC molecule

A novel recyclable organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen

• Gyula Dargó,
• Dóra Erdélyi,
• Balázs Molnár,
• Péter Kisszékelyi,
• Zsófia Garádi and
• József Kupai

Beilstein J. Org. Chem. 2023, 19, 1811–1824, doi:10.3762/bjoc.19.133

• , application, and recycling of a new lipophilic cinchona squaramide organocatalyst. The synthesized lipophilic organocatalyst was applied in Michael additions. The catalyst was utilized to promote the Michael addition of cyclohexyl Meldrum’s acid to 4-chloro-trans-β-nitrostyrene (quantitative yield, up to 96

• the other components of the reaction mixture. The lipophilic O-alkylated gallic acid unit increases the solubility of the organocatalyst in less polar solvents, such as DCM or toluene but leads to the precipitation of the organocatalyst in polar solvents, including MeOH or MeCN. As a result, the

• applied between the catalytic and lipophilic units to avoid a decrease in the catalytic activity. The demethylated cinchona squaramide 6 was reacted with O-p-toluenesulfonyl-N-Boc-ethanolamine. The protecting group was removed using trifluoroacetic acid, followed by a neutralization step, gaining the