Conformational effects on iodide binding: a comparative study of flexible and rigid carbazole macrocyclic analogs

• Guang-Wei Zhang,
• Yong Zhang,
• Le Shi,
• Chuang Gao,
• Hong-Yu Li and
• Lei Xue

Beilstein J. Org. Chem. 2025, 21, 2369–2375, doi:10.3762/bjoc.21.181

• binding ability to iodide ions in chloroform solution. It should be noted that the titration curve did not approach saturation, which may be attributed to conformational changes occurring during the quenching process. At high quencher concentrations, structural alterations in fluorophores could induce

Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications

• Jullyane Emi Matsushima,
• Khushbu,
• Zuliah Abdulsalam,
• Udyogi Navodya Kulathilaka Conthagamage and
• Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2345–2366, doi:10.3762/bjoc.21.179

• , Lin and co-workers reported [2]rotaxanes that contain naphthalimide fluorophores on the macrocycle and a spiropyran as one of the axle stoppers [17]. The photoswitching of the spiropyran was used to modulate the photoluminescence of the rotaxane through Förster resonance energy transfer (FRET) with

Synthesis of optically active folded cyclic dimers and trimers

• Ena Kumamoto,
• Kana Ogawa,
• Kazunori Okamoto and
• Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

• same absolute configuration. The |glum| value of 7 was 0.4 × 10−3 (Figure S18A, Supporting Information File 1), which was lower than that of 6. In the case of the film states of 6 and 7, low PL brightness and intermolecular random orientation of fluorophores resulted in noisy CPL signals. The CD

Biobased carbon dots as photoreductants – an investigation by using triarylsulfonium salts

• Valentina Benazzi,
• Arianna Bini,
• Ilaria Bertuol,
• Mariangela Novello,
• Federica Baldi,
• Matteo Hoch,
• Alvise Perosa and
• Stefano Protti

Beilstein J. Org. Chem. 2025, 21, 1024–1030, doi:10.3762/bjoc.21.84

• typically exhibit excitation-dependent emission spectra and large Stokes shifts, features that are uncommon in traditional molecular fluorophores and semiconductor nanoparticles, and such behavior is attributed to the intrinsic heterogeneity of the CDs. The peculiar photophysics of carbon dots arises from

On the photoluminescence in triarylmethyl-centered mono-, di-, and multiradicals

• Daniel Straub,
• Markus Gross,
• Mona E. Arnold,
• Julia Zolg and
• Alexander J. C. Kuehne

Beilstein J. Org. Chem. 2025, 21, 964–998, doi:10.3762/bjoc.21.80

• ]. The donor-functionalized trityl molecules exhibit only few vibrational modes in the above mentioned spectral range, leading to relatively high ϕ at long wavelengths (≈800 nm). These molecules seem to overcome the typical restriction of the energy gap rule, where the ϕ of conventional fluorophores

Synthesis of HBC fluorophores with an electrophilic handle for covalent attachment to Pepper RNA

• Raphael Bereiter and
• Ronald Micura

Beilstein J. Org. Chem. 2025, 21, 727–735, doi:10.3762/bjoc.21.56

• Raphael Bereiter Ronald Micura Institute of Organic Chemistry, Center for Molecular Biosciences, Innsbruck (CMBI), University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria 10.3762/bjoc.21.56 Abstract The fluorescent light-up aptamer (FLAP) Pepper can utilize fluorophores that are equipped

• )cyanophenylacetonitrile) fluorophores for easy access, which will contribute to the rapid dissemination of the RNA imaging approaches associated therewith. Keywords: covalent RNA labeling; FLAP; fluorophore synthesis; HBC530; self-alkylating ribozymes; Introduction The discovery of fluorescent reporters, such as green

• fluorophores that provide the parent HBC530 ((4-((2-hydroxyethyl)(methyl)amino)benzylidene)cyanophenylacetonitrile) stilbene core [7] but offer an electrophilic alkyl handle on the amino group replacing the original N-hydroxyethyl residue. Three of them have been applied in the cellular applications (Brc3HBC

Photochemically assisted synthesis of phenacenes fluorinated at the terminal benzene rings and their electronic spectra

• Yuuki Ishii,
• Minoru Yamaji,
• Fumito Tani,
• Kenta Goto,
• Yoshihiro Kubozono and
• Hideki Okamoto

Beilstein J. Org. Chem. 2025, 21, 670–679, doi:10.3762/bjoc.21.53

• molecules displayed high hole mobility [20][21][22][23][24][25][26] and imide-fused phenacenes served as n-type organic semiconductors [27]. It was also disclosed that donor–acceptor-type phenacenes provided environment-dependent fluorophores showing solvatochromic fluorescence behavior [28][29]. Because

Photocatalyzed elaboration of antibody-based bioconjugates

• Marine Le Stum,
• Eugénie Romero and
• Gary A. Molander

Beilstein J. Org. Chem. 2025, 21, 616–629, doi:10.3762/bjoc.21.49

• antibodies in disease detection and treatment is that they are adorned with functional units (e.g., fluorophores, radionuclides, toxic payloads) that must be efficiently and selectively installed through compatible synthetic methods. Dozens of ADCs have been approved for clinical uses, and to date all are

Synthesis and characterizations of highly luminescent 5-isopropoxybenzo[rst]pentaphene

• Islam S. Marae,
• Jingyun Tan,
• Rengo Yoshioka,
• Zakaria Ziadi,
• Eugene Khaskin,
• Serhii Vasylevskyi,
• Ryota Kabe,
• Xiushang Xu and
• Akimitsu Narita

Beilstein J. Org. Chem. 2025, 21, 270–276, doi:10.3762/bjoc.21.19

• by scanning electron microscopy. The intriguing optical properties of BPP and its derivatives may lead to their application as fluorophores. Keywords: benzo[rst]pentaphene; intramolecular charge transfer; nanocrystals; photoluminescence; polycyclic aromatic hydrocarbon; Introduction Polycyclic

Tunable full-color dual-state (solution and solid) emission of push–pull molecules containing the 1-pyrindane moiety

• Anastasia I. Ershova,
• Sergey V. Fedoseev,
• Konstantin V. Lipin,
• Mikhail Yu. Ievlev,
• Oleg E. Nasakin and
• Oleg V. Ershov

Beilstein J. Org. Chem. 2024, 20, 3016–3025, doi:10.3762/bjoc.20.251

• unchanged. This represents a rare approach for the design of such fluorophores. Arylidene derivatives of pyrindane were found to be efficient fluorescent dyes showing a moderate to high emission quantum yield. The push–pull molecules were also characterized by a dual-state emission (in solution and in the

• , which is a rare approach for such fluorophores. Another rare phenomenon for push–pull molecules is dual-state emission (DSE) [45][46][47]. At the same time, the scope of applications of fluorophores exhibiting DSE is much wider. This is due to the fact that DSE molecules, after absorbing energy, are

Synthesis of pyrrole-fused dibenzoxazepine/dibenzothiazepine/triazolobenzodiazepine derivatives via isocyanide-based multicomponent reactions

• Marzieh Norouzi,
• Mohammad Taghi Nazeri,
• Ahmad Shaabani and
• Behrouz Notash

Beilstein J. Org. Chem. 2024, 20, 2870–2882, doi:10.3762/bjoc.20.241

• their suitable fluorophores [49][50][51]. The UV–vis absorption and emission spectra of products 4 and 6 were studied in ethanol at 298 K. The absorption range (λabs) was 400–225 nm, and the emission range (λem) was 560–400 nm. These findings are shown in Figure S3 in Supporting Information File 1. An

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• filtered off, washed with water (2 × 5 mL) and recrystallized from a mixture of DMF/iPrOH 1:2. The title compounds 5a–e were obtained as white solids. Some biologically active compounds and organic fluorophores containing the imidazo[1,2-a]pyrimidine nucleus. Existing approaches to imidazo[1,2-a

Photoluminescence color-tuning with polymer-dispersed fluorescent films containing two fluorinated diphenylacetylene-type fluorophores

• Kazuki Kobayashi,
• Shigeyuki Yamada,
• Motohiro Yasui and
• Tsutomu Konno

Beilstein J. Org. Chem. 2024, 20, 2682–2690, doi:10.3762/bjoc.20.225

• if blue and green–yellow or yellow fluorophores are blended in appropriate ratios, a binary blend with color coordinates (0.20, 0.32) can be achieved, which approaches the white point of pure white emission. These findings contribute to the development of effective lighting and display devices as new

• the PMMA film containing a mixture of 1a and 1c indicate that the use of fluorophores with PL bands on the longer-wavelength side is more effective in approaching the ideal white color than green–yellow fluorophore 1c. Photoluminescence behavior of PMMA dispersion films containing a mixture of blue

• film containing a fluorinated diphenylacetylene with a tetramethyljulolidine skeleton exhibited yellow PL. Intensive investigation of the PL behavior of these PMMA films blended as a binary mixture of blue and green–yellow or yellow fluorophores showed smooth energy transfer from the high-energy

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• excellent yields (71–89%). Dömling et al. have used glyoxal dimethyl acetal as orthogonal bifunctional monoprotected aldehyde to synthetize GBB dimers as potential fluorophores. More details are given in chapter 5 [43]. The GBB reaction can be exploited also in the late-stage functionalization of natural

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• steroids 124a–e, adducts 125a–d and 126a–e were easily obtained as single diastereomers via a Pictet–Spengler condensation with coumarins A and B (used as fluorophores) under acidic conditions (Scheme 35). Computational binding studies of compound 126c in the ligand-binding pocket of enzyme 17β-HSD5

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• nitrile-substituted carbazoles 2s and 2t, which are potent fluorophores. While 2s was isolated in 61% yield, the additional 6-bromo-substituent diminished the yield of 2t to 47%. When we subjected 6-membered 10H-dibenzo[b,e]iodinin-5-iums to our conditions, we synthesized the N-acyl dihydroacridane 3a

Thienothiophene-based organic light-emitting diode: synthesis, photophysical properties and application

• Recep Isci and
• Turan Ozturk

Beilstein J. Org. Chem. 2023, 19, 1849–1857, doi:10.3762/bjoc.19.137

• efficiencies pointed out that DMB-TT-TPA (8) is among the best D–π–A modal fluorophores suitable for an OLED application. Moreover, the photophysical properties of DMB-TT-TPA (8) were investigated through time-resolved fluorescence studies (390 nm laser source in THF). The fluorescence lifetime (τ) of DMB-TT

A deep-red fluorophore based on naphthothiadiazole as emitter with hybridized local and charge transfer and ambipolar transporting properties for electroluminescent devices

• Suangsiri Arunlimsawat,
• Patteera Funchien,
• Pongsakorn Chasing,
• Atthapon Saenubol,
• Taweesak Sudyoadsuk and
• Vinich Promarak

Beilstein J. Org. Chem. 2023, 19, 1664–1676, doi:10.3762/bjoc.19.122

• coordinates of (0.664, 0.335)), an EQEmax of 3.32% and exciton utilization efficiency (EUE) of 47%. Keywords: ambipolar material; deep red fluorophore; hybridized local and charge transfer; naphthothiadiazole; OLED; organic light-emitting diode; Introduction Recently, organic fluorophores with efficient

• designing new DR/NIR organic fluorophores in combination with device engineering to build up the performance of DR/NIR OLEDs. In general, to realize high fluorescence in the DR/NIR region from the organic fluorophores, the challenges of their pronounced non-radiative processes, and high planarity and

• extended π-conjugation lengths which eventually favor the undesired formation of poorly emissive molecular aggregates must be overcome. Alternatively, donor–acceptor (D–A)-type organic fluorophores have been introduced and successfully exploited for the development of fluorophores with DR/NIR emissions

pH-Responsive fluorescent supramolecular nanoparticles based on tetraphenylethylene-labelled chitosan and a six-fold carboxylated tribenzotriquinacene

• Nan Yang,
• Yi-Yan Zhu,
• Wei-Xiu Lin,
• Yi-Long Lu and
• Wen-Rong Xu

Beilstein J. Org. Chem. 2023, 19, 635–645, doi:10.3762/bjoc.19.45

• powders of CS-TPE exhibit a pale-yellow appearance under normal daylight conditions and emit intense green-blue light when exposed to UV irradiation (365 nm). This phenomenon differs greatly from the fluorescence properties of conventional ACQ fluorophores, which are typically nonfluorescent under UV

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• the pyrene unit as well as combinations of pyrene with other aromatic fluorophores could improve the properties [7]. Recently, Takaishi et al. reported chiral exciplex dyes having pyrenyl, perylenyl, and 4-(dimethylamino)phenyl groups incorporated in their structure, which showed circularly polarized

• formed an exciplex [15], and conjugates formed of pyrene and an amino acid-fluorescent nucleobase derivative qAN1, differing in length and flexibility between fluorophores [16]. Due to pre-organization, both conjugates strongly interacted with ds-DNA/RNA grooves with similar affinity but opposite

Synthesis, optical and electrochemical properties of (D–π)₂-type and (D–π)₂Ph-type fluorescent dyes

• Kosuke Takemura,
• Kazuki Ohira,
• Taiki Higashino,
• Keiichi Imato and
• Yousuke Ooyama

Beilstein J. Org. Chem. 2022, 18, 1047–1054, doi:10.3762/bjoc.18.106

• intermolecular π–π interactions between the fluorophores leading to delocalization of excitons or excimers in the solid state would be responsible for the bathochromic shifts of λmax,abs and λmax,fl and lowering of Φfl with change of state from solution to solid [34][35][36]. The τfl-solid values of OTK-2 and

1,2-Naphthoquinone-4-sulfonic acid salts in organic synthesis

• Ruan Carlos B. Ribeiro,
• Patricia G. Ferreira,
• Amanda de A. Borges,
• Luana da S. M. Forezi,
• Fernando de Carvalho da Silva and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 53–69, doi:10.3762/bjoc.18.5

• enhancement behavior with a blueshift in the emission maximum upon enclathration of various types of organic solvents. It is important to note that other authors carried out the reaction of 18 with N,N-diethylaniline without the presence of Ni(II) [104][105]. In the search for fluorophores of heterocyclic

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• promising fluorescent enhancements and an ability to detect mismatches in live cells [155]. Overall, the TO- and BisQ-modified FIT PNAs are currently among the most promising fluorescent PNA probes. While promising, the studies discussed in this section leave plenty of room for designing better fluorophores

Tuning the solid-state emission of liquid crystalline nitro-cyanostilbene by halogen bonding

• Subrata Nath,
• Alexander Kappelt,
• Matthias Spengler,
• Bibhisan Roy,
• Jens Voskuhl and
• Michael Giese

Beilstein J. Org. Chem. 2021, 17, 124–131, doi:10.3762/bjoc.17.13

• [22]. This readily accessible class of fluorophores can easily be modified and attached to other functional entities, thus it has become a promising candidate for the design of new materials for optoelectronic applications [23]. Recently, it was successfully employed as a fluorescent moiety in the

Circularly polarized luminescent systems fabricated by Tröger's base derivatives through two different strategies

• Cheng Qian,
• Yuan Chen,
• Qian Zhao,
• Ming Cheng,
• Chen Lin,
• Juli Jiang and
• Leyong Wang

Beilstein J. Org. Chem. 2021, 17, 52–57, doi:10.3762/bjoc.17.6

• ; inversion of CPL handedness; Tröger's base; Introduction Recently, much effort has been devoted to constructing luminescent materials with efficient high emission in the solid state [1][2][3]. More and more types of fluorophores with aggregation-induced emission (AIE) characteristics have been discovered

• DGG. In the CPL-active co-gels, noncovalent weak interactions might be formed between achiral fluorophores and a chiral gelator. So, the CPL emission of co-gels could be adjusted easily by external stimuli. The ᴅ-glutamic acid gelator DGG and its enantiomer LGG possess three hydrogen-bond sites, two