Synthesis of indole–cycloalkyl[b]pyridine hybrids via a four-component six-step tandem process

• Muthumani Muthu,
• Rakkappan Vishnu Priya,
• Abdulrahman I. Almansour,
• Raju Suresh Kumar and
• Raju Ranjith Kumar

Beilstein J. Org. Chem. 2018, 14, 2907–2915, doi:10.3762/bjoc.14.269

• -carbonitrile hybrids 15–18 were isolated (Table 4). The structure of all the hybrid heterocycles 15–18 was elucidated using NMR spectroscopy and in the case of 16f the structure was further confirmed from single crystal X-ray studies (Figure 4) [74]. Conclusion The syntheses of a library of novel indole

Protein–protein interactions in bacteria: a promising and challenging avenue towards the discovery of new antibiotics

• Laura Carro

Beilstein J. Org. Chem. 2018, 14, 2881–2896, doi:10.3762/bjoc.14.267

• the peptide-binding pocket of the β-clamp, they carried out a fluorescence anisotropy titration screening of the Rockefeller University chemical library containing 30,600 polar organic compounds which led to the discovery of RU7 (9, Figure 3) with an inhibition constant of 10 μM. Pleasingly, it was

• ECSC 10 (Figure 3), which displayed an IC50 in the low micromolar range (IC50 = 40 μM). X-ray crystallography studies revealed that this biphenyl oxime derivative 10 also occupies subsite I of the β-clamp [61]. In 2014, the Zenobia’s First Pass Screen fragment library containing more than 350 fragments

• was screened by X-ray crystallography leading to the identification of four fragment hits. In an attempt to improve their binding affinities, another library was searched for compounds displaying similarity to these initial hits. After a docking-based screening followed by a fluorescence polarization

Photocatalyic Appel reaction enabled by copper-based complexes in continuous flow

• Clémentine Minozzi,
• Jean-Christophe Grenier-Petel,
• Shawn Parisien-Collette and
• Shawn K. Collins

Beilstein J. Org. Chem. 2018, 14, 2730–2736, doi:10.3762/bjoc.14.251

• conversion of an alcohol to bromide involved screening a wide variety of structurally varied complexes. Our group has previously demonstrated that the nature of each ligand influences the physical and photophysical properties as well as catalytic activity of the resulting catalyst (Figure 2) [27]. A library

• adapted to continuous flow using purple LED reactors. The batch and continuous flow processes were all made possible due to the ability to screen highly modular copper-based complexes for photocatalysis. Alcohol→bromide functional group transformations. Ligands used in the library generation of

• heteroleptic copper(I)-based complexes for photocatalysis. Evaluation of the library of copper-based complexes in photocatalytic alcohol→bromide conversion. Reactions irradiated with 394 nm light (pink) or 450 nm (blue). Front entries without an indicated phosphine ligand pertain to homoleptic Cu(diamine)2BF4

Assembly of fully substituted triazolochromenes via a novel multicomponent reaction or mechanochemical synthesis

• Robby Vroemans,
• Yenthel Verhaegen,
• My Tran Thi Dieu and
• Wim Dehaen

Beilstein J. Org. Chem. 2018, 14, 2689–2697, doi:10.3762/bjoc.14.246

• product 6. As variation of the substituents on the three different starting materials is necessary to obtain a diverse library, there is one main limitation to overcome. The first step of the reaction relies on the fluidity of salicylaldehyde (1a) to liquefy the reaction mixture. Salicylaldehyde analogs

Synthesis and biological evaluation of 1,2-disubstituted 4-quinolone analogues of Pseudonocardia sp. natural products

• Stephen M. Geddis,
• Teodora Coroama,
• Suzanne Forrest,
• James T. Hodgkinson,
• Martin Welch and
• David R. Spring

Beilstein J. Org. Chem. 2018, 14, 2680–2688, doi:10.3762/bjoc.14.245

• , traditionally considered to be challenging scaffolds. Screening of the library provided valuable insights into the structure–activity relationship of the bacterial growth defects, and suggested that selectivity between bacterial species should be attainable. Furthermore, a structurally related series of

• substituent in our previous study, for which these copper-catalysed conditions resulted in dimerization [11]. Following the discovery of this substrate-dependent dichotomy with respect to optimal reaction conditions, the entire library of compounds was successfully cyclised. Whilst the yields ranged from low

• heterocyclisation with concomitant N–>N’ methyl transfer. With the library of natural products and analogues in hand, our attention turned to their biological activity. It was desired to further explore the growth defects which had been previously noted for natural products 1–4 against E. coli and S. aureus, and so

Non-native autoinducer analogs capable of modulating the SdiA quorum sensing receptor in Salmonella enterica serovar Typhimurium

• Matthew J. Styles and
• Helen E. Blackwell

Beilstein J. Org. Chem. 2018, 14, 2651–2664, doi:10.3762/bjoc.14.243

• identify an expanded range of synthetic ligands for SdiA. Herein, we report the screening of a focused library of AHL analogs for activity in the SdiA receptor from S. Typhimurium. Compound efficacies and potencies were measured in agonism and antagonism assays using an SdiA luminescence reporter system

• Selection of the AHL library for screening. We sought to examine a range of AHL-type scaffolds for activity in SdiA. We selected a series of sub-libraries from our in-house compound collections for analysis with demonstrated activities in other LuxR-type receptors, including TraR from Agrobacterium

• tested is shown in Supporting Information File 1. An overview of the structures in each sub-library is provided below. Sub-libraries A and H contained AHLs with differing acyl tail lengths and oxidation levels at the tail β-carbon, including many naturally occurring AHLs [51][55]. The B and D sub

The design and synthesis of an antibacterial phenothiazine–siderophore conjugate

• Abed Tarapdar,
• James K. S. Norris,
• Oliver Sampson,
• Galina Mukamolova and
• James T. Hodgkinson

Beilstein J. Org. Chem. 2018, 14, 2646–2650, doi:10.3762/bjoc.14.242

• chelating groups of the siderophore. The synthesis is readily amenable to the preparation of analogues whereby the siderophore component of the conjugate can be modified. The route will be used to prepare a library of siderophore–phenothiazine conjugates for full biological evaluation of much needed new

• antibiotic delivery. A library of mono-, bis- and tris-catechol phenothiazine–siderophore conjugates are currently being prepared using this route. Their synthesis and MIC values against pathogenic mycobacteria, Gram-negative bacteria and Gram-positive bacteria, along with compound 11, will be reported in

Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers

• Christian Schütz and
• Martin Empting

Beilstein J. Org. Chem. 2018, 14, 2627–2645, doi:10.3762/bjoc.14.241

• showed activity in the nanomolar range (Figure 8). Furthermore, a tetrazolopyrimidinone scaffold 19 has been reported to inhibit PqsD through a putative blockade of the CoA binding site [61]. The Böttcher group used a library of HHQ as well as PQS analogues to screen for PqsD inhibition [62]. To this end

• . In order to block the thioesterase activity of the enzyme, a library of 500 fragments was screened via differential scanning fluorimetry (DSF) and the hit fragments 24–26 (Figure 11) were further validated using isothermal titration calorimetry (ITC) [66]. Binding to PqsE could be confirmed with KD

• the same group used docking studies to select compounds from a quinolone-based compound library (Figure 17). The best fitting compounds 37–40 were then evaluated in a whole bacterial cell-based P. aeruginosa screening with IC50 values in the low micromolar range. Additionally, they showed that

Microwave-assisted synthesis of biologically relevant steroidal 17-exo-pyrazol-5'-ones from a norpregnene precursor by a side-chain elongation/heterocyclization sequence

• Gergő Mótyán,
• László Mérai,
• Márton Attila Kiss,
• Zsuzsanna Schelz,
• Izabella Sinka,
• István Zupkó and
• Éva Frank

Beilstein J. Org. Chem. 2018, 14, 2589–2596, doi:10.3762/bjoc.14.236

• heterocyclization. In order to enlarge the compound library available for pharmacological studies, the 3β-OH analogs 7a–j of the primary products 6a–j were also synthesized through simple alkaline deacetylation (Scheme 2, Table 1). The structures of all synthesized compounds were characterized by 1H and 13C NMR

Quinolines from the cyclocondensation of isatoic anhydride with ethyl acetoacetate: preparation of ethyl 4-hydroxy-2-methylquinoline-3-carboxylate and derivatives

• Nicholas G. Jentsch,
• Jared D. Hume,
• Emily B. Crull,
• Samer M. Beauti,
• Amy H. Pham,
• Julie A. Pigza,
• Jacques J. Kessl and
• Matthew G. Donahue

Beilstein J. Org. Chem. 2018, 14, 2529–2536, doi:10.3762/bjoc.14.229

• cyanohydrin-hydrolysis route (10f→19) and an umpolung acyl addition strategy (10f→21). The development of a library of quinoline scaffolds is currently underway within our lab utilizing this synthetic process [34][35]. Experimental General procedure for isatoic anhydride synthesis 6-Bromo-2H-benzo[d][1,3

Investigation of the electrophilic reactivity of the biologically active marine sesquiterpenoid onchidal and model compounds

• Melissa M. Cadelis and
• Brent R. Copp

Beilstein J. Org. Chem. 2018, 14, 2229–2235, doi:10.3762/bjoc.14.197

• conclusions drawn attributing bioactivities such as antifeedant activity to this chemical reactivity [1][11][12][13]. In an effort to ascertain whether the mollusc metabolite onchidal is susceptible to nucleophilic attack in a similar manner, herein we report on the reactivity of onchidal and a library of

Assessing the possibilities of designing a unified multistep continuous flow synthesis platform

• Mrityunjay K. Sharma,
• Roopashri B. Acharya,
• Chinmay A. Shukla and
• Amol A. Kulkarni

Beilstein J. Org. Chem. 2018, 14, 1917–1936, doi:10.3762/bjoc.14.166

• various molecules involving multiple chemical transformations (homogeneous or reactions involving multiple phases) at various optimal conditions including work-up/purification in continuous mode. Screening: Rapid screening of operating conditions and development of a library of molecules from similar

• speed up the overall process to truly harness the advantages of flow synthesis. Based on different objectives viz. reaction screening, library generation, bench/pilot scale synthesis for various molecules we have shown three approaches to make a unified multistep flow synthesis platform which can be

Host–guest complexes of conformationally flexible C-hexyl-2-bromoresorcinarene and aromatic N-oxides: solid-state, solution and computational studies

• Rakesh Puttreddy,
• Ngong Kodiah Beyeh,
• S. Maryamdokht Taimoory,
• Daniel Meister,
• John F. Trant and
• Kari Rissanen

Beilstein J. Org. Chem. 2018, 14, 1723–1733, doi:10.3762/bjoc.14.146

• Rakesh Puttreddy Ngong Kodiah Beyeh S. Maryamdokht Taimoory Daniel Meister John F. Trant Kari Rissanen University of Jyvaskyla, Department of Chemistry, P. O. Box 35, 40014 Jyväskylä, Finland Department of Chemistry, Oakland University, 146 Library Drive, Rochester, Michigan 48309-4479, USA

Hypervalent organoiodine compounds: from reagents to valuable building blocks in synthesis

• Gwendal Grelier,
• Benjamin Darses and
• Philippe Dauban

Beilstein J. Org. Chem. 2018, 14, 1508–1528, doi:10.3762/bjoc.14.128

• derivatives. This relayed strategy can therefore be applied to non-symmetrical cyclic diaryliodonium species, thereby affording a library of functionalized benzoxazoles 58 with complete regiocontrol. The group of Zhang has developed a one-pot procedure for the sequential difunctionalization of cyclic diaryl

• -λ3-iodanes (Scheme 23) [63]. The first step relies on the copper-catalyzed coupling between an anthranilic acid derivative and the biphenyl moiety. The resulting iodoarene product is then submitted to a Sonogashira coupling reaction, allowing the one-pot preparation of a library of biphenyl products

Synthesis of chiral 3-substituted 3-amino-2-oxindoles through enantioselective catalytic nucleophilic additions to isatin imines

• Hélène Pellissier

Beilstein J. Org. Chem. 2018, 14, 1349–1369, doi:10.3762/bjoc.14.114

• advances, the involvement of other types of organocatalysts and metal ligands will have to be investigated in these transformations along with the use of other nucleophiles to even more extend the library of chiral 3-substituted 3-amino-2-oxindoles available for drug discovery. Mannich reaction of N-Boc

An overview of recent advances in duplex DNA recognition by small molecules

• Sayantan Bhaduri,
• Nihar Ranjan and
• Dev P. Arya

Beilstein J. Org. Chem. 2018, 14, 1051–1086, doi:10.3762/bjoc.14.93

• sequence-specific DNA binding, the lack of viable strategies for facile synthesis of library of structural variants of these classes of conjugates remains a huge challenge for the researchers. In order to resolve this issue, Dervan et al. recently published a modular microwave-assisted Fmoc-based solid

• phase synthetic approach for the syntheses of cyclic Py/Im polyamides [84]. This group previously optimized and reported a machine-assisted Fmoc solid phase synthesis of simpler polyamides to afford high step-wise coupling yield [85]. A seven-member library of cyclic polyamides targeting androgen

Mechanochemistry of nucleosides, nucleotides and related materials

• Olga Eguaogie,
• Joseph S. Vyle,
• Patrick F. Conlon,
• Manuela A. Gîlea and
• Yipei Liang

Beilstein J. Org. Chem. 2018, 14, 955–970, doi:10.3762/bjoc.14.81

• hypoxanthine but cytosine remained untransformed. In situ deprotection of 2′,3′,5′-tri-O-acetyladenosine was also claimed. This chemistry has also been applied to the preparation of a library of ribosylated nicotinamide and nicotinic acid ester derivatives in a mortar grinder or using mixer or planetary ball

• ) and adenosine diphosphate ribose (ADPR) was also described. Subsequently, this methodology was applied to the preparation of a library of six ADPR carbonate derivatives in 23–68% yields (e.g., Scheme 14) and tested as sirtuin inhibitors [54]. The efficiency of phosphate coupling under mechanochemical

An efficient and facile access to highly functionalized pyrrole derivatives

• Meng Gao,
• Wenting Zhao,
• Hongyi Zhao,
• Ziyun Lin,
• Dongfeng Zhang and
• Haihong Huang

Beilstein J. Org. Chem. 2018, 14, 884–890, doi:10.3762/bjoc.14.75

• considerable efforts have been expended to build stereogenic centers of pyrrolidine derivatives using chiral catalysts [7]. As our aim was to construct a small library of polysubstituted pyrroles for antibacterial screening, it prompted us to develop a concise and efficient synthesis of pyrrolo[3,4-c]pyrrole

• could meet our requirement to basically construct a small library of highly functionalized pyrrole derivatives for antibacterial screening or for further chemical manipulations to get more promising compounds. Conclusion In summary, we have developed an efficient, operationally simple protocol to afford

Methyl isocyanide as a convertible functional group for the synthesis of spirocyclic oxindole γ-lactams via post-Ugi-4CR/transamidation/cyclization in a one-pot, three-step sequence

• Amarendar Reddy Maddirala and
• Peter R. Andreana

Beilstein J. Org. Chem. 2018, 14, 875–883, doi:10.3762/bjoc.14.74

• carbon centers under basic conditions providing molecular diversity and a small library of spirocyclic oxindoles. Keywords: convertible isocyanides; lactams; molecular diversity; oxindoles; transamidation; Introduction The Ugi-multicomponent coupling reaction [1][2], followed by post-modification

• a 1,4-Michael addition to form an exclusive 5-endo-trig cyclization of 5-chloro-1'-phenylspiro[indoline-3,2'-pyrrolidine]-2,5'-dione (8a, Scheme 5). Compound 8a was unequivocally confirmed by both, mass spectral analysis and NMR. Encouraged by the results, we prepared a library of spiro[indoline-3,2

• conclusion, we have investigated and developed an efficient process towards spirocyclic α,β-unsaturated γ-lactam oxindoles and spirocyclic γ-lactams using a one-pot three-step post-Ugi-4CR intramolecular transamidation/cyclization approach. We utilized this strategy for the synthesis of a small library of

A stereoselective and flexible synthesis to access both enantiomers of N-acetylgalactosamine and peracetylated N-acetylidosamine

• Bettina Riedl and
• Walther Schmid

Beilstein J. Org. Chem. 2018, 14, 856–860, doi:10.3762/bjoc.14.71

• library of 2-amino-2-deoxysugars, as well as a variety of derivatives, for further studies. Four possible isomers reachable through the presented approach. Sharpless epoxidation to gain D-galacto- 5a and L-galacto-configured epoxythreitol 5b. Reagents and conditions: a) i) (COCl)2, DMSO, Et3N, DCM, ii

Recent advances in synthetic approaches for medicinal chemistry of C-nucleosides

• Kartik Temburnikar and
• Katherine L. Seley-Radtke

Beilstein J. Org. Chem. 2018, 14, 772–785, doi:10.3762/bjoc.14.65

• triphosphates they inhibit the NS5B polymerase as did the triphosphates of the guanosine analogues [71]. The library of adenosine analogues was further expanded by introducing functional groups at C7 (16–19), which exhibit potent activity in RNA replication assays, with the carboxamide group in particular

Volatiles from the xylarialean fungus Hypoxylon invadens

• Jeroen S. Dickschat,
• Tao Wang and
• Marc Stadler

Beilstein J. Org. Chem. 2018, 14, 734–746, doi:10.3762/bjoc.14.62

• Figure 4F and 4G), and the mass spectrum of this compound was highly similar to a mass spectrum of 5-hydroxy-2-methyl-4H-chromen-4-one in our mass spectral library. A synthetic standard of this compound was obtained via a known procedure from 2,6-dihydroxyacetophenone (23) and acetyl chloride under basic

Carbohydrate inhibitors of cholera toxin

• Vajinder Kumar and
• W. Bruce Turnbull

Beilstein J. Org. Chem. 2018, 14, 484–498, doi:10.3762/bjoc.14.34

• synthesis, so they designed second generation inhibitors by changing the synthetically challenging α-Neu5Ac with alpha-hydroxy acids 2 [33][34]. Using a combinatorial approach, a library of non-hydrolyzable, non O-glycosidic third generation inhibitors were synthesised using appropriate linkers. The CTB

• pentamers in the crystal lattice, opening a possible route for the structure-based design of inhibitors that aggregate the toxin [36]. Hol, Verlinde and co-workers designed and synthesised a library of compounds utilizing a fragment of the toxin’s natural receptor. Both CTB and LTB have specific affinity

• for the terminal galactose part of GM1 [37][38][39]. They screened a number of galactose derivatives with substitution at O1 and C2 and found that the most potent molecule in this library was m-nitrophenyl α-D-galactoside (4) which was 100 times better than galactose for binding to CTB [38][39]. In

Stimuli-responsive oligonucleotides in prodrug-based approaches for gene silencing

• Françoise Debart,
• Christelle Dupouy and
• Jean-Jacques Vasseur

Beilstein J. Org. Chem. 2018, 14, 436–469, doi:10.3762/bjoc.14.32

• phosphotriester linkages [43]. This recent publication, which was twice highlighted by C. Ducho [44] and A. Khvorova [45], is a reference in the field of ON prodrugs because, for the first time, a biological effect was measured in mice. Indeed, Dowdy’s group succeeded in the synthesis of a library of more than 40

Preparation of trinucleotide phosphoramidites as synthons for the synthesis of gene libraries

• Ruth Suchsland,
• Bettina Appel and
• Sabine Müller

Beilstein J. Org. Chem. 2018, 14, 397–406, doi:10.3762/bjoc.14.28

• libraries can be prepared by a variety of methods, starting from the respective gene library. The challenge in gene library preparation is to achieve controlled total or partial randomization at any predefined number and position of codons of a given gene, in order to obtain a library with a maximum number

• on soluble polymers, and their use as synthons in standard DNA synthesis. Keywords: gene library; protein engineering; soluble support; synthesis; trinucleotide; Introduction Protein engineering is a highly actual research area with a number of potential applications [1][2][3][4]. The construction

• protein structure and the mechanism of action. On the opposite, directed evolution relies on the selection of a mutant with predefined properties from a random protein library. This strategy is advantageous over the rational design; whenever molecular properties of proteins are investigated that are not