Carbohydrate PEGylation, an approach to improve pharmacological potency

• M. Eugenia Giorgi,
• Rosalía Agusti and
• Rosa M. de Lederkremer

Beilstein J. Org. Chem. 2014, 10, 1433–1444, doi:10.3762/bjoc.10.147

• recognized as immunodominant epitopes in antigenic glycoconjugates [14]. Carbohydrates participate in molecular recognition events such as host–pathogen interactions, responsible for mammal infections, and are candidates for chemotherapy [15]. Moreover, synthesis of multivalent carbohydrate ligands provide

Molecular recognition of surface-immobilized carbohydrates by a synthetic lectin

• Melanie Rauschenberg,
• Eva-Corrina Fritz,
• Christian Schulz,
• Tobias Kaufmann and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2014, 10, 1354–1364, doi:10.3762/bjoc.10.138

• Melanie Rauschenberg Eva-Corrina Fritz Christian Schulz Tobias Kaufmann Bart Jan Ravoo Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany 10.3762/bjoc.10.138 Abstract The molecular recognition of carbohydrates and proteins mediates a

• agglutinin. It was found that the printed carbohydrates retain their characteristic selectivity towards the synthetic and natural lectins and that the recognition of synthetic and natural lectins is strictly orthogonal. Keywords: carbohydrates; lectins; molecular recognition; microarrays; multivalent

• results obtained from the microarray support our earlier finding that the interaction of HisHis and NANA is 1:2 [39], so that HisHis is likely to bind divalently to the microarray surface. Conclusion In summary, we have investigated the molecular recognition of surface immobilized carbohydrates by a

Design and synthesis of multivalent neoglycoconjugates by click conjugations

• Feiqing Ding,
• Li Ji,
• Ronny William,
• Hua Chai and
• Xue-Wei Liu

Beilstein J. Org. Chem. 2014, 10, 1325–1332, doi:10.3762/bjoc.10.134

• and glycopeptides are the key constituents of the cellular membrane and extracellular matrix, and play a pivotal role in various key cellular events such as cell–cell recognition, host–pathogen or host–symbiont interactions, molecular recognition of antibodies and metastasis [1][2][3][4][5]. The

Tandem Cu-catalyzed ketenimine formation and intramolecular nucleophile capture: Synthesis of 1,2-dihydro-2-iminoquinolines from 1-(o-acetamidophenyl)propargyl alcohols

• Gadi Ranjith Kumar,
• Yalla Kiran Kumar,
• Ruchir Kant and
• Maddi Sridhar Reddy

Beilstein J. Org. Chem. 2014, 10, 1255–1260, doi:10.3762/bjoc.10.125

• constituents in pharmaceutical chemistry [30][31][32][33][34][35][36][37][38][39][40][41][42] and also found to play a crucial role in molecular recognition processes [43][44][45][46]. Due to its vast-spread importance, several methods have been developed to construct this useful framework. Apart from the

Synthesis of a sucrose dimer with enone tether; a study on its functionalization

• Zbigniew Pakulski,
• Norbert Gajda,
• Magdalena Jawiczuk,
• Jadwiga Frelek,
• Piotr Cmoch and
• Sławomir Jarosz

Beilstein J. Org. Chem. 2014, 10, 1246–1254, doi:10.3762/bjoc.10.124

• synthesis; sucrose; Introduction Molecular recognition is one of the most important phenomena in stereoselective processes. Chiral crown ethers (or analogs) are particularly useful in enantioselective reactions [1][2] as well as differentiation of chiral guests [3][4]. From all of the chiral platforms

Olefin cross metathesis based de novo synthesis of a partially protected L-amicetose and a fully protected L-cinerulose derivative

• Bernd Schmidt and
• Sylvia Hauke

Beilstein J. Org. Chem. 2014, 10, 1023–1031, doi:10.3762/bjoc.10.102

• ., through molecular recognition of a preferred binding site [2][3][4][5], thereby ensuring the selectivity of a chemotherapeutic agent. Particularly common are side chains composed of deoxygenated sugars [6]. For example, the kigamicins are bacterial secondary metabolites isolated from Amicolatopsis sp. [7

Addition of H-phosphonates to quinine-derived carbonyl compounds. An unexpected C9 phosphonate–phosphate rearrangement and tandem intramolecular piperidine elimination

• Łukasz Górecki,
• Artur Mucha and
• Paweł Kafarski

Beilstein J. Org. Chem. 2014, 10, 883–889, doi:10.3762/bjoc.10.85

• catalysis, transition metal complexing, molecular recognition, chromatographic separation and analysis of enantiomers [2][3][4][5]. Synthetic modifications of the basic structure, motivated by an improved stereoselectivity potential of quinine, are an issue of ongoing trials [6][7][8][9]. Surprisingly

Molecular recognition of isomeric protonated amino acid esters monitored by ESI-mass spectrometry

• Andrea Liesenfeld and
• Arne Lützen

Beilstein J. Org. Chem. 2014, 10, 825–831, doi:10.3762/bjoc.10.78

• protonated amino acid esters. Keywords: amino acids; isomer labelled guest method (ILGM); mass spectrometry; molecular recognition; 9,9’-spirobifluorenes; template; Introduction The separation of constitutionally isomeric amino acids is of practical interest. This is particularly true for leucine (Leu

• achieve amino acid recognition by an artificial host [6][7][8][9][10][11] with regard to isomer separation upon isomer-selective molecular recognition by a concave template acting as a host, thereby avoiding the necessity to establish or break additional covalent chemical bonds. Hence, we have prepared

• target compounds 1 and 2 in moderate yields (Scheme 2). Molecular recognition studies With our crown ether derivatives 1 and 2 in hands we studied their recognition behaviour towards the L-leucine isomers. Usually, spectroscopic techniques like NMR or UV–vis spectroscopy are used for this purpose

Staudinger ligation towards cyclodextrin dimers in aqueous/organic media. Synthesis, conformations and guest-encapsulation ability

• Malamatenia D. Manouilidou,
• Yannis G. Lazarou,
• Irene M. Mavridis and
• Konstantina Yannakopoulou

Beilstein J. Org. Chem. 2014, 10, 774–783, doi:10.3762/bjoc.10.73

• specific guest molecules. The oligomers are reported to display improved to significantly enhanced binding capacity as well as superior molecular recognition ability [12][13][14], compared to the natural CDs. Suitable design has resulted in better hosts for applications as sensors and catalysts [15], hosts

End-group-functionalized poly(N,N-diethylacrylamide) via free-radical chain transfer polymerization: Influence of sulfur oxidation and cyclodextrin on self-organization and cloud points in water

• Sebastian Reinelt,
• Daniel Steinke and
• Helmut Ritter

Beilstein J. Org. Chem. 2014, 10, 680–691, doi:10.3762/bjoc.10.61

• interactions in living systems [3][4]. Since then, the field of self-assembly through molecular recognition has attracted much attention also in the design of smart materials. In this context, cyclodextrins (CD) are of interest as ring shaped host molecules, e.g., for the design of stimuli-responsive hydrogels

Novel supramolecular affinity materials based on (−)-isosteviol as molecular templates

• Christina Lohoelter,
• Malte Brutschy,
• Daniel Lubczyk and
• Siegfried R. Waldvogel

Beilstein J. Org. Chem. 2013, 9, 2821–2833, doi:10.3762/bjoc.9.317

• ][6][7][8][9][10]. Particular interest was given to C3-symmetric structures, serving e.g. as templates in asymmetric catalysis or molecular recognition [11][12][13][14]. A specific but potent subclass of such C3-symmetric architectures is represented by triphenylene ketals [15]. They have found

Synthesis of enantiopure sugar-decorated six-armed triptycene derivatives

• Paola Bonaccorsi,
• Maria Luisa Di Gioia,
• Antonella Leggio,
• Lucio Minuti,
• Teresa Papalia,
• Carlo Siciliano,
• Andrea Temperini and
• Anna Barattucci

Beilstein J. Org. Chem. 2013, 9, 2410–2416, doi:10.3762/bjoc.9.278

• chemistry. Moreover, they have been investigated for their potential applications in molecular recognition, showing powerful complexation abilities toward different kinds of organic guests [3][4]. Many biological processes, such as cell–cell communication, immune response and cancer metastasis, are

• cluster effect [7][8][9][10][11]. These glycoconjugates showed their potentialities not only in the interpretation of molecular recognition events but also in biotechnological, pharmaceutical and medical fields [12]. Our research interest is focused on the synthesis of new glycoconjugates and the study of

• tool for the study of molecular recognition. Experimental General methods. All commercial reagents and solvents (AR, LabScan Ltd.; SpS, Romil Ltd.) were used without further purification. All syntheses were carried out under atmospheric conditions unless otherwise noted. Analytical TLC was performed on

Structure elucidation of β-cyclodextrin–xylazine complex by a combination of quantitative ¹H–¹H ROESY and molecular dynamics studies

• Syed Mashhood Ali,
• Kehkeshan Fatma and
• Snehal Dhokale

Beilstein J. Org. Chem. 2013, 9, 1917–1924, doi:10.3762/bjoc.9.226

• science and is the basis for most of the vital biological processes [1]. The basis of supramolecular chemistry is molecular recognition where host and guest species interact with each other and exist as a single system. These host–guest systems symbolize simplest examples of supramolecular systems in

Molecular assembly of amino acid interlinked, topologically symmetric, π-complementary donor–acceptor–donor triads

• M. B. Avinash,
• K. V. Sandeepa and
• T. Govindaraju

Beilstein J. Org. Chem. 2013, 9, 1565–1571, doi:10.3762/bjoc.9.178

• realized by modulating the chemical functionality of interlinking amino acids. Keywords: amino acids; charge transfer; designer functional molecules; molecular assembly; molecular recognition; Findings Geometric shapes, size and patterns have attracted the inquisitive human mind since time immemorial [1

• ][2]. The significance of geometric complementarity and chemical functionality can be exemplified by the well-known “lock and key” mechanism of enzymes as well as the prototypal molecular recognition manifested in biochemical processes [1][2][3][4]. It is this elementary yet elegant design strategy

• symmetric and π-complementary pyrene and NDI. Consequently, free-floating high-aspect-ratio supercoiled nanofibres and hierarchical helical bundles of triads are realized by modulating the chemical functionality of interlinking amino acids. Such molecular-recognition processes embodied in pertinent designer

The diketopiperazine-fused tetrahydro-β-carboline scaffold as a model peptidomimetic with an unusual α-turn secondary structure

• Francesco Airaghi,
• Andrea Fiorati,
• Giordano Lesma,
• Manuele Musolino,
• Alessandro Sacchetti and
• Alessandra Silvani

Beilstein J. Org. Chem. 2013, 9, 147–154, doi:10.3762/bjoc.9.17

• are structural motifs commonly found in bioactive peptides, which, besides being fundamental in protein folding, play a central role as molecular-recognition elements [31][32][33][34]. In addition to the most frequently occurring β and γ-turns, reversal of the polypeptide chain direction in globular

Self-assembled organic–inorganic magnetic hybrid adsorbent ferrite based on cyclodextrin nanoparticles

• Ângelo M. L. Denadai,
• Frederico B. De Sousa,
• Joel J. Passos,
• Fernando C. Guatimosim,
• Kirla D. Barbosa,
• Ana E. Burgos,
• Fernando Castro de Oliveira,
• Jeann C. da Silva,
• Bernardo R. A. Neves,
• Nelcy D. S. Mohallem and
• Rubén D. Sinisterra

Beilstein J. Org. Chem. 2012, 8, 1867–1876, doi:10.3762/bjoc.8.215

• (CDs) can be associated with the inorganic matrix as an interesting strategy, since these macromolecules have been used for several devices with different properties, from light-responsive matrices to molecular recognition materials [12][13]. CDs are oligosaccharides commonly formed by six, seven or

Mannose-decorated cyclodextrin vesicles: The interplay of multivalency and surface density in lectin–carbohydrate recognition

• Ulrike Kauscher and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2012, 8, 1543–1551, doi:10.3762/bjoc.8.175

• ; cyclodextrins; lectins; molecular recognition; multivalency; vesicles; Introduction The surface modification of materials with carbohydrates has attracted much attention due to the fact that such materials can be compared to and compatible with the cell surface [1]. The “glycocalyx” is a dense layer on the

Interaction of cyclodextrins with pyrene-modified polyacrylamide in a mixed solvent of water and dimethyl sulfoxide as studied by steady-state fluorescence

• Akihito Hashidzume,
• Yongtai Zheng and
• Akira Harada

Beilstein J. Org. Chem. 2012, 8, 1312–1317, doi:10.3762/bjoc.8.150

• hydrogels [22][23][24][25][26][27] and macroscopic assemblies based on molecular recognition [28][29][30][31]. Aromatic residues absorb light to become excited, and subsequently they can transfer energy and electrons. The interaction of CDs with water-soluble polymers carrying aromatic residues may allow

• one to construct functional systems that convert photo energy based on molecular recognition. Among aromatic compounds, pyrene is the most examined as a fluorescence probe or label because it shows a relatively high fluorescence quantum yield and a relatively long fluorescence lifetime in both monomer

• ][36]. Recently, we have demonstrated this selectivity switching on macroscopic molecular recognition for polyacrylamide-based gels carrying pyrenyl (Py) and CD residues, by changing the composition of a mixed solvent of water and dimethyl sulfoxide (DMSO) [37]. In the present study, the interaction of

The effect of the formyl group position upon asymmetric isomeric diarylethenes bearing a naphthalene moiety

• Renjie Wang,
• Shouzhi Pu,
• Gang Liu and
• Shiqiang Cui

Beilstein J. Org. Chem. 2012, 8, 1018–1026, doi:10.3762/bjoc.8.114

• nucleosides and molecular recognition properties of nucleic acids with the light sensitivity of diarylethenes [34]. Recently, Wu et al. designed and synthesized a novel diarylethene-containing dithiazolethene, which exhibited a gated photochromic reactivity controlled by complexation/dissociation with BF3 [35

Parallel and four-step synthesis of natural-product-inspired scaffolds through modular assembly and divergent cyclization

• Hiroki Oguri,
• Haruki Mizoguchi,
• Hideaki Oikawa,
• Aki Ishiyama,
• Masato Iwatsuki,
• Kazuhiko Otoguro and
• Satoshi Ōmura

Beilstein J. Org. Chem. 2012, 8, 930–940, doi:10.3762/bjoc.8.105

• groups and hydrogen-bond donors or acceptors. The incorporation of multiple sp3-centers on the scaffold creates a unique three-dimensional shape of the surface, which is responsible for specific molecular recognition with biomacromolecules in the cellular context [1][2][3]. To generate diverse

Investigation of the network of preferred interactions in an artificial coiled-coil association using the peptide array technique

• Raheleh Rezaei Araghi,
• Carsten C. Mahrenholz,
• Rudolf Volkmer and
• Beate Koksch

Beilstein J. Org. Chem. 2012, 8, 640–649, doi:10.3762/bjoc.8.71

• close to and within the interhelical core (a,d,e,g), which are most important for molecular recognition, were mutated. More specifically, hydrophobic (a15,d18) and electrostatic (e19,g21) positions were mutated simultaneously (Figure 2). The 35mer mutants on the membrane only differ in the positions

Enantioselective supramolecular devices in the gas phase. Resorcin[4]arene as a model system

• Caterina Fraschetti,
• Matthias C. Letzel,
• Antonello Filippi,
• Maurizio Speranza and
• Jochen Mattay

Beilstein J. Org. Chem. 2012, 8, 539–550, doi:10.3762/bjoc.8.62

• life's supramolecular systems in which the guest molecule (e.g., amino acids, neurotransmitters, drugs) is selectively captured into the host macromolecular structure (molecular recognition) and transformed catalytically at a specific “active site” (enzyme catalysis) [1][2][3]. Furthermore, the

• the effective probability that the necessary proton transfer from T to B occurs. Rigid resorcin[4]arenes as chiral selectors of amino acids and neurotransmitters. Further insights into the molecular recognition of basket resorcin[4]arene V towards representative chiral molecules were gathered. For

Synthesis of multivalent host and guest molecules for the construction of multithreaded diamide pseudorotaxanes

• Nora L. Löw,
• Egor V. Dzyuba,
• Boris Brusilowskij,
• Lena Kaufmann,
• Elisa Franzmann,
• Wolfgang Maison,
• Emily Brandt,
• Daniel Aicher,
• Arno Wiehe and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2012, 8, 234–245, doi:10.3762/bjoc.8.24

• these concepts are not only molecular recognition and the noncovalent bonds themselves, but also self-assembly, self-sorting, templation and multivalent binding [1][2][3][4][5][6][7][8]. Consequently, the reductionist investigation of synthetic supramolecules can help us to understand biological systems

Fifty years of oxacalix[3]arenes: A review

• Kevin Cottet,
• Paula M. Marcos and
• Peter J. Cragg

Beilstein J. Org. Chem. 2012, 8, 201–226, doi:10.3762/bjoc.8.22

• -substituted phenol; however, in host–guest chemistry an asymmetric macrocycle can provide a site for enantioselective molecular recognition. In the case of p-tert-butylcalix[n]arenes the tert-butyl substituent can be removed, as mentioned previously, through a retro-Friedel–Crafts acylation, and replaced by

• function as a molecular recognition centre. The cavity created by the lipophilic phenolic units, particularly when held in place through allosteric effects of lower-rim substituents bound to metals, can accommodate a number of quaternary ammonium ions or buckminsterfullerene, C60. Consequently, the ability

Binding of group 15 and group 16 oxides by a concave host containing an isophthalamide unit

• Jens Eckelmann,
• Vittorio Saggiomo,
• Svenja Fischmann and
• Ulrich Lüning

Beilstein J. Org. Chem. 2012, 8, 11–17, doi:10.3762/bjoc.8.2

• ; macrocycle; molecular recognition; Introduction In the last decade, isophthalamide derivatives have become attractive neutral hosts as anion receptors [1][2]. Some of these derivatives show a high selectivity for one anion over others [3]. Isophthalamide units have also been incorporated into macrocycles [4