Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• membrane (Figure S26, Supporting Information File 1). The compound showed not to be toxic to the HeLa cells as no visible damage was detected. Interactions of Phen-Py-1 and Phen-Py-2 with ds-polynucleotides and enzyme dipeptidyl peptidase III in an aqueous medium Interactions of Phen-Py-1 and Phen-Py-2

Transition-metal-catalyzed C–H bond activation as a sustainable strategy for the synthesis of fluorinated molecules: an overview

• Louis Monsigny,
• Floriane Doche and
• Tatiana Besset

Beilstein J. Org. Chem. 2023, 19, 448–473, doi:10.3762/bjoc.19.35

• Co catalysis [165][166][167]. In 2022, Volla and co-workers reported the ortho-2,2,2-trifluoroethoxylation of benzamide using an N,O-bidentate directing group by merging Co- and visible light organophotocatalysis [168]. Palladium catalysis: In 2017, Ji, Li and co-workers reported a thorough study on

Discrimination of β-cyclodextrin/hazelnut (Corylus avellana L.) oil/flavonoid glycoside and flavonolignan ternary complexes by Fourier-transform infrared spectroscopy coupled with principal component analysis

• Nicoleta G. Hădărugă,
• Gabriela Popescu,
• Dina Gligor (Pane),
• Cristina L. Mitroi,
• Sorin M. Stanciu and
• Daniel Ioan Hădărugă

Beilstein J. Org. Chem. 2023, 19, 380–398, doi:10.3762/bjoc.19.30

• triglycerides from hazelnut oil are clearly visible in all ternary complexes at 2922–2924, 2853–2854, and 1744–1745 cm−1, respectively. These values are very close to those corresponding to the starting hazelnut oil. Among other glyceride-related bands, those at 1453–1458 cm−1 originating from bending

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• medicinal chemistry. Owing to the strong absorption in the visible region, these 18π-electron systems also demonstrate excellent photoluminescence properties. Therefore, porphyrin hybrids have been widely used as efficient sensitizers for PDT applications and dye-sensitized solar cells (DSSCs). Because the

• relatively inefficient quenching of the ZnP singlet excited state, slow charge separation, and fast charge recombination processes on the visible excitation of ZnP and UV excitation of NDI chromophores. On the other hand, excitation of the NDI chromophore leads to the charge separation via both singlet and

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• is mediated by visible light irradiation. A wide range of substrates bearing different substituents and derived from ubiquitous carboxylic acids, including α-amino acids, were synthesized and examined under this very mild, efficient, and cost effective transition-metal-free synthetic method. These

• reported a Ru(bpy)3Cl2-catalyzed synthesis of N-Boc proline oxindole derivatives under visible-light assistance [47]. Therein, N-hydroxyphthalimide (NPhth) esters were utilized as alkyl radical precursors, which can be readily prepared from highly available carboxylic acids. In 2015, Cheng and co-workers

• disclosed a visible light-mediated radical tandem cyclization of N-arylacrylamides with N-(acyloxy)phthalimides to access 3,3-dialkylated oxindoles in the presence of [Ru(bpy)3Cl2]·6H2O [46]. However, these seminal methods remain limited by the need of noble-metal-based photocatalysts, excess additives and

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• ppm), using gas-phase calculations and smaller basis sets with this set of phosphorus compounds, compared to our method (5.9/7.1 ppm) with CHCl3 solvation and the larger basis sets, is notable. The greater scatter is clearly visible by comparing the scaling plot for the Latypov method in Figure 2b to

Inline purification in continuous flow synthesis – opportunities and challenges

• Jorge García-Lacuna and
• Marcus Baumann

Beilstein J. Org. Chem. 2022, 18, 1720–1740, doi:10.3762/bjoc.18.182

• presented a detailed review on continuous crystallizations of pharmaceutical compounds which discusses these approaches [108]. It is in the field of crystallization where the biggest gap between industry and academia is visible. While industry has large downstream platforms to purify APIs, academia is at a

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• cycle turnover. The subclass of such reactions in which a catalyst is activated by light (photoredox catalysis, Scheme 1, type IV), especially visible, has gained much attention in the last decade. A considerable number of good reviews was published, both general [19][20][21][22][23][24][25][26][27][28

• photoredox-catalyst or electrochemically on an anode. An example of the photochemical aerobic benzylic CH-oxidation employing a heterogeneous photoredox catalyst, nanosized TiO2, was demonstrated by our group [85] (Scheme 9). Mixing of NHPI and TiO2 leads to the emergence of visible light absorbance

• under visible light irradiation. The advantages of this mixed hetero-/homogeneous catalytic system include the easy separation of the products from NHPI and TiO2, recyclability, selectivity control by TiO2/NHPI ratio, and high efficiency at low TiO2 loading due to the radical chain nature of the

Microelectrode arrays, electrosynthesis, and the optimization of signaling on an inert, stable surface

• Kendra Drayton-White,
• Siyue Liu,
• Yu-Chia Chang,
• Sakashi Uppal and
• Kevin D. Moeller

Beilstein J. Org. Chem. 2022, 18, 1488–1498, doi:10.3762/bjoc.18.156

• absolute binding constants in the absence of a positive control. In this case, the positive control needed for any subsequent study was cleary visible and quantifiable. However, the amplification of signals on the array could not be ignored as soon as we sought to use the arrays to guide the synthesis of

Synthesis of the biologically important dideuterium-labelled adenosine triphosphate analogue ApppI(d₂)

• Petri A. Turhanen

Beilstein J. Org. Chem. 2022, 18, 1466–1470, doi:10.3762/bjoc.18.153

• ), 1.35–1.25 (m, 26H, from TBA salt), 0.90 (t, J = 7.3, 39H, from TBA salt); 13C NMR (D2O) δ 156.5, 153.7, 150.1, 144.3, 140.9, 119.5, 112.3, 87.6, 85.1 (d, 2JCP = 9.3), 75.4, 71.5, 66.2 (d, 3JCP = 5.4), 65.1 (m, 2H-C-2H, hardly visible), 59.0 (virtual t, from TBA salt), 38.5 (d, 3JCP = 7.5), 24.1 (from

• , 2H), 4.79 (br, 1H), 4.67 (br, 1H), 2.45 (s, 3H), 2.34 (s, 2H), 1.66 (s, 3H);13C NMR (CDCl3) δ 144.9, 140.2, 133.3, 130.0 (2C), 128.0 (2C), 113.2, 68.0 (m, 2H-C-2H, 1JCD = 22.9, hardly visible), 36.7, 22.5, 21.8. Structure of natural pyrophosphate and examples of NBPs (Z = Na or H). Structures of ATP

Naphthalimide-phenothiazine dyads: effect of conformational flexibility and matching of the energy of the charge-transfer state and the localized triplet excited state on the thermally activated delayed fluorescence

• Kaiyue Ye,
• Liyuan Cao,
• Davita M. E. van Raamsdonk,
• Zhijia Wang,
• Jianzhang Zhao,
• Daniel Escudero and
• Denis Jacquemin

Beilstein J. Org. Chem. 2022, 18, 1435–1453, doi:10.3762/bjoc.18.149

• with the measured values. The CT character of the 1CT and 3CT states is visible in the electronic density difference (EDDs) plots shown in Scheme 2, which clearly indicates the flow of electron density from the PTZ to the NI moieties. Conversely, the LE states are fully localized within the acceptor

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• , the structural model allowed unambiguous assignment of the solid state molecular structure and absolute configuration. As shown in Figure 2, the desired axial anomeric phosphate was clearly visible alongside an interesting gg rotameric form for the C6–chloro side chain substituent (pyranose side chain

On drug discovery against infectious diseases and academic medicinal chemistry contributions

• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 1355–1378, doi:10.3762/bjoc.18.141

• high-throughput screenings [287]. This strategy is certainly visible when considering compounds 34–36 or the switch from artemisinin (43) to the peroxides 41, 42 and 44 depicted above and it is also a source of chemical challenges for instance to achieve a scaffold hoping or a bioisosteric replacements

Computational model predicts protein binding sites of a luminescent ligand equipped with guanidiniocarbonyl-pyrrole groups

• Neda Rafieiolhosseini,
• Matthias Killa,
• Thorben Neumann,
• Niklas Tötsch,
• Jean-Noël Grad,
• Alexander Höing,
• Thies Dirksmeyer,
• Jochen Niemeyer,
• Christian Ottmann,
• Shirley K. Knauer,
• Michael Giese,
• Jens Voskuhl and
• Daniel Hoffmann

Beilstein J. Org. Chem. 2022, 18, 1322–1331, doi:10.3762/bjoc.18.137

• . AIE-active molecule 1. (a) Structure of 1 with color-coded subunits AIE, lysine, and GCP. (b) Coarse-grained bead-spring model of 1. 14-3-3ζ from (a) top and (b) side with the two monomers in red and blue. In the top view the central pore is clearly visible. The side view shows the ω shape with the

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• significantly accelerated by ultrasonic irradiation [16]. Cyclocondensation of 1,3-dicarbonyl compounds with substituted diaryl disulfides in water in the presence of β-cyclodextrin gave 2,3-disubstituted benzo-1,4-thiazines in 70–91% yield in 50 min [17]. A highly efficient visible-light-mediated one-pot

Synthesis of tryptophan-dehydrobutyrine diketopiperazine and biological activity of hangtaimycin and its co-metabolites

• Houchao Xu,
• Anne Wochele,
• Minghe Luo,
• Gregor Schnakenburg,
• Yuhui Sun,
• Heike Brötz-Oesterhelt and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 1159–1165, doi:10.3762/bjoc.18.120

• growth retardation of the Gram-positive species Bacillus subtilis 168 and Acinetobacter baumannii 09987 (Figure 3A and B). However, growth inhibition was not strong enough to yield a clear MIC value, as the determination of a MIC requires complete inhibition of visible bacterial growth and residual

• lowest concentration of an antibacterial agent inhibiting visible bacterial growth (no turbidity detected by the naked eye) after overnight incubation. Only when the outer membrane was permeabilised by polymyxin B nonapeptide (PMBN), 1 inhibited growth of E. coli sufficiently to yield a clear MIC. GC

Heterogeneous metallaphotoredox catalysis in a continuous-flow packed-bed reactor

• Wei-Hsin Hsu,
• Susanne Reischauer,
• Peter H. Seeberger,
• Bartholomäus Pieber and
• Dario Cambié

Beilstein J. Org. Chem. 2022, 18, 1123–1130, doi:10.3762/bjoc.18.115

• ; heterogeneous catalysis; metallaphotoredox catalysis; packed bed; photochemistry; Introduction The amount and impact of visible-light-mediated protocols in organic synthesis have increased dramatically since the late 2000s [1]. The main driving force of this phenomenon is the novel reactivity afforded by

• visible-light photocatalysts that enable new reaction pathways that were previously difficult or impossible to realize [2]. Technical advancements, such as the rise of light-emitting diodes (LEDs) and new reactor technologies were similarly important incentives to popularize light-mediated organic

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• CYP158C1 is the most likely enzyme for isoflavone dimerization. Interestingly, different from the in vivo extract, in vitro experiments gave a major dimer 5, a 3’,3’ coupled dimer assigned by MS–MS (Figures S8 and S14, Supporting Information File 1). Although dimer 3 was not visible in the HPLC analysis, a

Scope of tetrazolo[1,5-a]quinoxalines in CuAAC reactions for the synthesis of triazoloquinoxalines, imidazoloquinoxalines, and rhenium complexes thereof

• Laura Holzhauer,
• Chloé Liagre,
• Olaf Fuhr,
• Nicole Jung and
• Stefan Bräse

Beilstein J. Org. Chem. 2022, 18, 1088–1099, doi:10.3762/bjoc.18.111

• triazoloquinoxaline ligand has a visible influence on the reduction behavior of the complex. Conclusion New derivatives of 1,2,3-triazoloquinoxalines have been synthesized starting from tetrazolo[1,5-a]quinoxalines via CuAAC by varying the alkyne and the residues on the quinoxaline building blocks. During the

Electrochemical formal homocoupling of sec-alcohols

• Kosuke Yamamoto,
• Kazuhisa Arita,
• Masashi Shiota,
• Masami Kuriyama and
• Osamu Onomura

Beilstein J. Org. Chem. 2022, 18, 1062–1069, doi:10.3762/bjoc.18.108

• catalytic amount of transition-metal reductants have been developed, but stoichiometric silicon electrophiles and co-reductants such as Zn were commonly required to complete the catalytic cycle [14]. More recently, visible light-mediated pinacol coupling reactions have been disclosed by several groups [15

Post-synthesis from Lewis acid–base interaction: an alternative way to generate light and harvest triplet excitons

• Hengjia Liu and
• Guohua Xie

Beilstein J. Org. Chem. 2022, 18, 825–836, doi:10.3762/bjoc.18.83

• -(1-pyrenyl)-4-octylquinoline) (BPYOQ, compound 3 in Figure 5), which could be tuned in the whole visible range through the complex reaction with CSA [35]. This is supposed to be the first EL example of the protonated organic semiconductor. Compound 3 is an aromatic end-capped oligoquinoline, with

Continuous flow synthesis of azobenzenes via Baeyer–Mills reaction

• Jan H. Griwatz,
• Anne Kunz and
• Hermann A. Wegner

Beilstein J. Org. Chem. 2022, 18, 781–787, doi:10.3762/bjoc.18.78

• only the geometry is altered from the planar (E)-AB to its twisted (Z)-AB form, but also its properties change (e.g., dipole moment and polarity) [13][14]. Furthermore, the (Z)-AB can be reversibly switched back by visible light or thermally [15]. To synthesize ABs a variety of reactions can be chosen

Structural basis for endoperoxide-forming oxygenases

• Takahiro Mori and
• Ikuro Abe

Beilstein J. Org. Chem. 2022, 18, 707–721, doi:10.3762/bjoc.18.71

• photosensitizers or visible light, non-enzymatically reacts with the biosynthetic intermediates to produce endoperoxide structures [16][22][23]. However, over the past three decades, only a few endoperoxide-forming enzymes have been identified, including the cyclooxygenases in the biosynthesis of prostaglandins

• substituted with Ala or Phe generates an N-1 dealkylated product, which is non-enzymatically created from C21 hydroxylated products, as a major product. Based on these structural analyses, as well as an EPR analysis of the enzyme reaction of FtmOx1 and a transient ultraviolet–visible (UV–vis) absorption

Heteroleptic metallosupramolecular aggregates/complexation for supramolecular catalysis

• Prodip Howlader and
• Michael Schmittel

Beilstein J. Org. Chem. 2022, 18, 597–630, doi:10.3762/bjoc.18.62

• + 26), respectively, were successfully employed as visible-light photocatalysts for a cross-coupling cyclization of N,N-dimethylaniline (27) and N-alkyl/aryl maleimides 28 (Figure 6). Notably, the systems showed much higher catalytic activity compared to similar reactions with the dye or cages alone

Tetraphenylethylene-embedded pillar[5]arene-based orthogonal self-assembly for efficient photocatalysis in water

• Zhihang Bai,
• Krishnasamy Velmurugan,
• Xueqi Tian,
• Minzan Zuo,
• Kaiya Wang and
• Xiao-Yu Hu

Beilstein J. Org. Chem. 2022, 18, 429–437, doi:10.3762/bjoc.18.45

• chromophoric dye molecules can be utilized in photoredox reactions under the irradiation of light with suitable wavelength [6]. However, in the case of the m-TPEWP5G-EsY nanosystem, which contains conjugated molecules and displays harvesting antenna effects from ultraviolet to visible light wavelengths, solar

• FRET process, whilst the m-TPEWP5G-EsY nanorod assembly could act as a nanoreactor providing a suitable environment for the photochemical catalytic reaction in aqueous solution under visible light irradiation. In the presence of 0.5 mol % m-TPEWP5G-EY in aqueous solution, 2-bromo-1-phenylethanone (1a