Natural products in the predatory defence of the filamentous fungal pathogen Aspergillus fumigatus

• Jana M. Boysen,
• Nauman Saeed and
• Falk Hillmann

Beilstein J. Org. Chem. 2021, 17, 1814–1827, doi:10.3762/bjoc.17.124

• since it was shown to be an effective inhibitor of tumor necrosis factor-alpha (TNF-α) production by preventing the activation of TLR4 by lipopolysaccharide (LPS) and was thus proposed for potential use against atherosclerosis [67]. Furthermore fumigaclavine C has also proven effective against MCF-7

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

Sustainable manganese catalysis for late-stage C–H functionalization of bioactive structural motifs

• Jongwoo Son

Beilstein J. Org. Chem. 2021, 17, 1733–1751, doi:10.3762/bjoc.17.122

• fluorine activation (see 22i–j), and the oxygen-containing natural terpenoid ambroxide was methylated at the methylene position next to the O atom on the tetrahydrofuran ring (see 22k). This manganese-catalyzed late-stage approach enables the direct methylation of unactivated C–H bonds with excellent site

• 31n, regarded as a potentially viable peptide-based biosensor. Manganese-catalyzed inter- and intramolecular C–H alkenylations Manganese(I)-catalyzed C–H alkenylation of 2-phenylpyridines or N-pyridinylindoles with alkynes is characterized by proximity-induced C–H activation through chelation

• =NTces were used. Mn-catalyzed C–H methylation of heterocyclic scaffolds commonly found in small-molecule drugs. aDAST activation. bBF3⋅OEt2 activation. c1 mol % of (S,S)-Mn(CF3–PDP) was used. Examples of late-stage C–H methylation of bioactive molecules. aDAST activation. bFor insoluble substrates

A systems-based framework to computationally describe putative transcription factors and signaling pathways regulating glycan biosynthesis

• Theodore Groth,
• Rudiyanto Gunawan and
• Sriram Neelamegham

Beilstein J. Org. Chem. 2021, 17, 1712–1724, doi:10.3762/bjoc.17.119

• positively regulated by the RUNX3 TF (enrichment p-value = 0.033). The RUNX family of TFs (including RUNX1–3), are involved in several developmental processes, including hematopoiesis, immune cell activation, and skeletal development. It was discovered that RUNX3 acts as a tumor suppressor gene in breast

Volatile emission and biosynthesis in endophytic fungi colonizing black poplar leaves

• Christin Walther,
• Pamela Baumann,
• Katrin Luck,
• Beate Rothe,
• Peter H. W. Biedermann,
• Jonathan Gershenzon,
• Tobias G. Köllner and
• Sybille B. Unsicker

Beilstein J. Org. Chem. 2021, 17, 1698–1711, doi:10.3762/bjoc.17.118

• : initiation and activation of polymerase (95 °C/5 min); followed by 35 cycles of denaturation (95 °C/30 s), annealing (65 °C/30 s) and elongation (72 °C/90 s) and a single, final elongation step (72 °C/10 min). For gel electrophoresis, 4 µL PCR product was mixed with one drop loading dye (0.3 mL 30% glycerol

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

A recent overview on the synthesis of 1,4,5-trisubstituted 1,2,3-triazoles

• Pezhman Shiri,
• Ali Mohammad Amani and
• Thomas Mayer-Gall

Beilstein J. Org. Chem. 2021, 17, 1600–1628, doi:10.3762/bjoc.17.114

• corresponding product under the standard conditions, denoting that the reaction did not include the sequence of CuAAC followed by C–H activation. According to these facts, the reaction mechanism may be as below. First, the copper(I)-substituted acetylide 78 was generated via the reaction of the copper source

• . Later, carboxylate-ligand-assisted C–H bond activation takes place through a concerted metalation–deprotonation transformation to produce the next intermediate. Finally, the corresponding product 142 is formed by a reductive elimination process, along with the regeneration of the active catalytic

• '. The isocyanide is inserted into intermediate 158' to achieve intermediate 159'. A 1,2,3-triazole C–H bond activation occurs using palladium, which subsequently undergoes a reductive elimination process to afford final product 154. Likewise, the Pd(0) species is reformed for the next cycle [64]. The

Copper-mediated oxidative C−H/N−H activations with alkynes by removable hydrazides

• Feng Xiong,
• Bo Li,
• Chenrui Yang,
• Liang Zou,
• Wenbo Ma,
• Linghui Gu,
• Ruhuai Mei and
• Lutz Ackermann

Beilstein J. Org. Chem. 2021, 17, 1591–1599, doi:10.3762/bjoc.17.113

• the natural abundance and versatile reactivity. Early examples of copper-promoted C−H activation of 2-arylpyridines were disclosed by Yu et al. [12] and Chatami et al. [13] independently. Inspired by these studies, various copper-induced C−H functionalizations, such as arylations, alkynylations

• -catalyzed C−H activations with the MHP auxiliary [41][42][43][44]. In continuation of studies on sustainable 3d transition metal-catalyzed C−H activation [41][42][43][44][45][46][47][48][49], we have now discovered a robust copper-promoted oxidative C−H/N−H functionalization with terminal alkynes (Figure 1d

• Discussion We initiated our investigation by utilizing benzhydrazide 1a and ethynylbenzene (2a) as the standard substrates (Table 1). After preliminary solvent optimization, we discovered that the desired ortho-selective C−H activation occurred efficiently by the treatment of hydrazide 1a with terminal

Methodologies for the synthesis of quaternary carbon centers via hydroalkylation of unactivated olefins: twenty years of advances

• Thiago S. Silva and
• Fernando Coelho

Beilstein J. Org. Chem. 2021, 17, 1565–1590, doi:10.3762/bjoc.17.112

• expense of the olefin double bond. Review Olefin activation by transition metals Transition metals can act as π-acid catalysts in olefin double bond activation, as they weaken the alkene double bond through coordination to allow a nucleophilic attack on the sp2 carbon to form an alkylmetal intermediate

• activation. The use of metals in which the protodemetalation step of the σ-alkylmetal complex occurs preferentially to the β-hydride elimination arose as an alternative for the development of new methodologies. During the early 2000s, several synthetic methodologies flourished that employed gold catalysis to

• changing the previously optimized mild reaction conditions (Scheme 6). Only traces of 10 were observed in the absence of one of the metal salts; this excluded the participation of the silver salt in the olefin activation but highlighted its usual role in the activation of the gold catalyst, namely halide

Substituted nitrogen-bridged diazocines

• Pascal Lentes,
• Jeremy Rudtke,
• Thomas Griebenow and
• Rainer Herges

Beilstein J. Org. Chem. 2021, 17, 1503–1508, doi:10.3762/bjoc.17.107

• to unsubstituted diazocines 10c and 11c. The activation barrier (EA) of the E→Z isomerization (obtained by an Arrhenius plot) is higher in formylated compounds 11 compared to acetylated compounds 10 and is further increased by halogenation. The unsubstituted N-formyl diazocine 11c and brominated NAc

•  3, Table 2). The photoconversion yields (Z→E) of N-formyl diazocine 11c in water and bromo-NAc diazocine 10a are about 70%, which do not differ significantly from unsubstituted NAc diazocine 10c (72%) [15]. It is interesting to note that the half-lives and activation barriers (E→Z) are increasing

Iodine-catalyzed electrophilic substitution of indoles: Synthesis of (un)symmetrical diindolylmethanes with a quaternary carbon center

• Thanigaimalai Pillaiyar,
• Masoud Sedaghati,
• Andhika B. Mahardhika,
• Lukas L. Wendt and
• Christa E. Müller

Beilstein J. Org. Chem. 2021, 17, 1464–1475, doi:10.3762/bjoc.17.102

• derivatives 3ad and especially 3e [42]. Next, we investigated the antagonistic effect of 3e at CB1 receptors (Supporting Information File 1, Figure S3A). Compound 3e blocked CB1 receptor activation with an IC50 value of 5.68 ± 0.54 µM, while it was weaker in inhibiting CB2 receptor activation. Similarly, 3ad

• was also able to fully block CB1 receptor activation (IC50 value of 5.22 ± 0.68 µM). Our results indicate that the new DIM derivatives act as potent CB1 receptor antagonists with inverse agonistic activity, i.e., they stabilize the inactive receptor conformation. Further optimization is warranted

• 3a as an example, as depicted in Figure 5. We suggest that the reaction is initiated by iodine-mediated activation of the secondary alcohol in compound 1a (A), followed by elimination of HOI to generate the vinyliminium ion species B (see mesomeric structure C) [52]. This electrophilic intermediate

Antiviral therapy in shrimp through plant virus VLP containing VP28 dsRNA against WSSV

• Santiago Ramos-Carreño,
• Ivone Giffard-Mena,
• Jose N. Zamudio-Ocadiz,
• Alfredo Nuñez-Rivera,
• Ricardo Valencia-Yañez,
• Jaime Ruiz-Garcia,
• Maria Teresa Viana and
• Ruben D. Cadena-Nava

Beilstein J. Org. Chem. 2021, 17, 1360–1373, doi:10.3762/bjoc.17.95

• control [7]. So far several strategies have been reported to control the WSSV, including activation of the immune system, DNA vaccines, herbal extracts, and RNA interference (RNAi) [8][9]. Among them, the RNAi technology has shown great potential to protect shrimp against the WSSV in some lab-scale

• activation. Two groups of 15 shrimp were inoculated with the solution obtained from infected shrimp as previously described. Then, the shrimp were transferred into 60 L rectangular aquariums. A third group (n = 15) was used as a control. Shrimp inoculation was performed by intramuscular injection (IM), using

• -glycosylase (UNG) activation; 10 min at 95 °C to activate AmpliTaq Fast DNA Polymerase and then, 40 cycles of 15 seconds at 95 °C and 1 min at 60 °C. For the WSSV quantification, a standard curve was obtained with the plasmid DNA with the vp664 gene of 69 bp [45][51] at a 1:10 dilution factor. The

Fritsch–Buttenberg–Wiechell rearrangement of magnesium alkylidene carbenoids leading to the formation of alkynes

• Tsutomu Kimura,
• Koto Sekiguchi,
• Akane Ando and
• Aki Imafuji

Beilstein J. Org. Chem. 2021, 17, 1352–1359, doi:10.3762/bjoc.17.94

• ), and the C1–Cl bond (C1···Cl: 3.22 Å) was cleaved. The activation energy for this reaction was estimated to be 14.9 kcal/mol. The IRC calculation revealed that the chlorine atom gradually dissociated from the carbenoid carbon atom as the phenyl group approached the carbenoid carbon atom [38][39]. Then

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

Synthetic accesses to biguanide compounds

• Oleksandr Grytsai,
• Cyril Ronco and
• Rachid Benhida

Beilstein J. Org. Chem. 2021, 17, 1001–1040, doi:10.3762/bjoc.17.82

• 1888 it was discovered that heating a mixture of cyanoguanidine and amine hydrochloride in a polar solvent (mainly alcohols) led to the formation of biguanide. Indeed, proton exchanges at high temperatures may lead to the activation of cyanoguanidine by protonation, and the subsequent attack of the

• the cyanoguanidine reactivity by preventing proton exchanges, trimethylsilyl chloride was used in combination with microwave (MW) activation. Using acetonitrile and MW irradiation at 150 °C as the best conditions, Mayer et al. successfully prepared various N1-mono- and N1,N1-disubstituted aryl- and

• cyclocondensation toward the desired benzothiazinone in a 67% yield after 1 h refluxing in water, without requiring acidic activation of the cyanoguanidine (Scheme 13C) [37]. Reaction of amines with substituted cyanoguanidines: In 1946, Curd and Rose reported the first synthesis of biguanides by the reaction of

Metal-free glycosylation with glycosyl fluorides in liquid SO₂

• Krista Gulbe,
• Jevgeņija Lugiņina,
• Edijs Jansons,
• Artis Kinens and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 964–976, doi:10.3762/bjoc.17.78

• glycoconjugate synthesis [8][9]. Furthermore, varied reactivity between differentially protected glycosyl fluorides as well as between glycosyl fluorides and other glycosyl donors makes these substrates relevant for more effective glycosylation via orthogonal activation [10][11]. According to the hard–soft acid

• oligosaccharides and glycopeptides under basic aqueous conditions [32][33]. Nevertheless, most of the conventional conditions for glycosyl fluoride activation have considerable drawbacks in terms of atom efficiency and environmental impact. These methods generally require (1) stoichiometric amounts of promoters

• reaction was observed and mannosyl fluoride α-1a was fully recovered. Recently, Pedersen et al. have studied the vessel effect on the C–F bond activation of glucosyl fluorides [63]. They have proposed an autocatalytic glycosylation by SiF4 generated in situ form initially released HF that reacts with

Prins cyclization-mediated stereoselective synthesis of tetrahydropyrans and dihydropyrans: an inspection of twenty years

• Asha Budakoti,
• Pradip Kumar Mondal,
• Prachi Verma and
• Jagadish Khamrai

Beilstein J. Org. Chem. 2021, 17, 932–963, doi:10.3762/bjoc.17.77

• activation via DDQ oxidation, followed by nucleophilic attack of an unactivated olefin to obtain all-cis-trisubstituted Prins products with high stereochemical precision [111]. A single-electron transfer (SET) mechanism was proposed for the above transformation (Scheme 69). A SET from an arene or alkene to

Microwave-assisted multicomponent reactions in heterocyclic chemistry and mechanistic aspects

• Shivani Gulati,
• Stephy Elza John and
• Nagula Shankaraiah

Beilstein J. Org. Chem. 2021, 17, 819–865, doi:10.3762/bjoc.17.71

• generation of the β-enaminocarbonyl and nitrostyrene intermediates. Activation of Michael addition followed cyclization was catalyzed by silica-supported PPA-SiO2 (Scheme 23). Fused pyrroles have also been constructed by exploring the utility of a multicomponent reaction coupled with microwave irradiation

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• derivatives, including electron-donating or electron-withdrawing substituent groups in the para- or meta positions at the benzene rings, giving corresponding products in moderate yield. This protocol is also suitable for the structural diversity of epoxides, providing a new activation approach for C(sp3)–H

Synthesis of β-triazolylenones via metal-free desulfonylative alkylation of N-tosyl-1,2,3-triazoles

• Soumyaranjan Pati,
• Renata G. Almeida,
• Eufrânio N. da Silva Júnior and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2021, 17, 762–770, doi:10.3762/bjoc.17.66

• azides and alkynes [14][15]. However, the formation of the nitrogenated azoles by the classical Huisgen methodology is slow due to its high activation energies and also lack of regiochemical control, in general, leading to a mixture of 1,4- and 1,5-regioisomers of 1,2,3-triazoles. Later, Sharpless and

Valorisation of plastic waste via metal-catalysed depolymerisation

• Francesca Liguori,
• Carmen Moreno-Marrodán and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2021, 17, 589–621, doi:10.3762/bjoc.17.53

• activation of the chain-linking group of the polymer (either an ester, carbonate, ketone or amide) toward the nucleophilic attack of the various solvents. Specific examples, broken down according to the nature of the polymer and the process, will be reported in the next sections, in which metal catalysts are

• °C provided a hydrocarbon oil in 92% yield, 71.4% of which were attributable to styrene monomer [156]. A decrease of 56 kJ mol−1 for the activation energy of PS depolymerisation was calculated in the presence of the catalysts. More recently, high-porosity montmorillonite (Mt) was used to prepare Mg

• role of butoxide was postulated to be the activation of the heterogeneous splitting of dihydrogen. BDM is an important building block for the production of resins and polyesters other than PET [186][187]. Analogously, a similar Milstein-type ruthenium–PNN complex, generated in situ by treatment of the

Synthesis of (Z)-3-[amino(phenyl)methylidene]-1,3-dihydro-2H-indol-2-ones using an Eschenmoser coupling reaction

• Lukáš Marek,
• Lukáš Kolman,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2021, 17, 527–539, doi:10.3762/bjoc.17.47

• for the activation of the oxindole component involves the introduction of the triflate group into position 3. The synthesis of triflates according to the standard protocol involves the reaction of an alcohol with triflic chloride or anhydride. However, these very reactive reagents could react with 3

The synthesis of chiral β-naphthyl-β-sulfanyl ketones via enantioselective sulfa-Michael reaction in the presence of a bifunctional cinchona/sulfonamide organocatalyst

• Deniz Tözendemir and
• Cihangir Tanyeli

Beilstein J. Org. Chem. 2021, 17, 494–503, doi:10.3762/bjoc.17.43

• building blocks for the construction of more elaborate structures [7][8][9][10][11]. An outstanding class of quinine derived organocatalysts exhibits a bifunctional mode of activation by the incorporation of an acidic unit, such as urea, thiourea, squaramide or sulfonamide moieties, giving rise to the

• simultaneous activation of both the nucleophile and the electrophile [12][13][14][15]. Quinine derived sulfonamides were first introduced to the literature by Song et al. [16]. Since then, many contributions were made regarding their applications in a variety of reaction types [17][18][19][20]. However, sulfa

• Houk’s mode of activation was of lower energy than Wynberg’s activation mode, in which the activation and orientation of the nucleophile is done by the quinuclidine core [43]. According to our proposed model, the protonated quinuclidinium ion stabilizes the newly forming alkoxide on the electrophile

Synthetic strategies of phosphonodepsipeptides

• Jiaxi Xu

Beilstein J. Org. Chem. 2021, 17, 461–484, doi:10.3762/bjoc.17.41

• phosphonodepsipeptides 56 and 57, respectively. The oxidative activation was carried out in the presence of alcohols as nucleophiles so that stoichiometric formation of the phosphonochloridate was avoided and side reactions were minimized (Scheme 9) [25]. The current chlorination is a mild and neutral method for the

• phosphonochloridite 196 was then further reacted with methyl (S)-lactate ((S)-106b) followed by sulfurization with sulfur, affording the phosphonodepsithioxopeptide 198 in a one-pot activation–coupling–oxidation procedure (Scheme 36) [55]. Although it was mentioned that the phosphonochloridites were a more active

Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement

• Vladimir Kubyshkin,
• Rebecca Davis and
• Nediljko Budisa

Beilstein J. Org. Chem. 2021, 17, 439–460, doi:10.3762/bjoc.17.40

• biosynthesis occurs in an enzyme called aminoacyl-tRNA synthetase (AARS). An AARS usually performs several sequential steps (Figure 10A). First, an amino acid that fits into the binding pocket reacts with a molecule of ATP creating an aminoacyl adenylate. This step is called activation. An aminoacyl adenylate

• class IIa AARSs. In addition to the main activation and charging steps described above, the bacterial ProRS (gene proS) performs a few additional proofreading steps. Alanine and glycine are amino acids smaller than proline but with a similar polarity, and they can be activated by ProRS. If this happens

• , aminoacyl adenylate is released from the enzyme to be hydrolyzed by water. This process is called pretransfer editing. Cysteine is an amino acid that has a similar molecular volume to proline, and therefore cysteine can undergo activation and transfer by ProRS. To correct for this error, the transfer step