Photocatalyzed syntheses of phenanthrenes and their aza-analogues. A review

• Alessandra Del Tito,
• Havall Othman Abdulla,
• Davide Ravelli,
• Stefano Protti and
• Maurizio Fagnoni

Beilstein J. Org. Chem. 2020, 16, 1476–1488, doi:10.3762/bjoc.16.123

• proximity to each other, prone to be engaged in a bidentate-type metal-coordination complex [75]. 2.2 Synthesis of phenanthridines via photocatalyzed C–N bond formation As mentioned in the introduction, the examples gathered here involve the intermediacy of N-centered radicals. As a representative case, the

Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• diastereoisomeric purity (dr > 99:1) (Scheme 38). 2.9. Direct fluorination of β-methylene C(sp3)−H The direct fluorination of β-methylene C(sp3)−H bonds of Phe derivatives 157a–v having installed the bidentate auxiliary, 2-(pyridine-2-yl)isopropylamine (PIP-amine) 158, was attempted using Selectfluor in the

Cation-induced ring-opening and oxidation reaction of photoreluctant spirooxazine–quinolizinium conjugates

• Phil M. Pithan,
• Sören Steup and
• Heiko Ihmels

Beilstein J. Org. Chem. 2020, 16, 904–916, doi:10.3762/bjoc.16.82

• discussed in the literature whether metal cations are coordinated in a monodentate fashion to the phenolate oxygen atom or rather in a bidentate fashion both to the phenolate oxygen and the imine nitrogen atoms of the open merocyanine form [25][28]. Furthermore, density functional theory (DFT) calculations

Recent advances in Cu-catalyzed C(sp³)–Si and C(sp³)–B bond formation

• Balaram S. Takale,
• Ruchita R. Thakore,
• Elham Etemadi-Davan and
• Bruce H. Lipshutz

Beilstein J. Org. Chem. 2020, 16, 691–737, doi:10.3762/bjoc.16.67

• conversion of 2-substituted 1,3-dienes 376 into borocyano products using commercially available phosphine ligands (Scheme 60). Simply switching from a mono to a bidentate ligand resulted in 1,4 to 4,1-borocupration. The formation of allyl–Cu intermediates in the catalytic cycle readily trap available

Design and synthesis of diazine-based panobinostat analogues for HDAC8 inhibition

• Sivaraman Balasubramaniam,
• Sajith Vijayan,
• Liam V. Goldman,
• Xavier A. May,
• Kyra Dodson,
• Sweta Adhikari,
• Fatima Rivas,
• Davita L. Watkins and
• Shana V. Stoddard

Beilstein J. Org. Chem. 2020, 16, 628–637, doi:10.3762/bjoc.16.59

• [3]. Among these drugs, panobinostat (Farydak, Novartis) an FDA approved drug, has been recognized as a pan-deacetylase inhibitor [9][10]. As a hydroxamic acid pan-HDACi, it is zinc-dependent, capable of binding in a bidentate fashion to the zinc-containing catalytic domain of the HDACs, and

• possesses a −log(Kd) value of 8.36 suggesting that it too would be on a par with panobinostat (8.47). Our previous study showed that the hydroxamate tail of TOI1, TOI2, and TOI4 formed a bidentate interaction with the Zn2+ ion at the base of the HDAC8 receptor, which is consistent with the crystal structure

• (Figure 2). This shift allows for the indole ring of TOI4 to fit in a small hydrophobic pocket at the surface, which is created by the phenyl ring of Phe-207. Like the previously studied compounds (TOI1, TOI2, and TOI4), TOI3-rev is also shown to bind to the HDAC8 receptor by forming a bidentate

Architecture and synthesis of P,N-heterocyclic phosphine ligands

• Wisdom A. Munzeiwa,
• Bernard Omondi and
• Vincent O. Nyamori

Beilstein J. Org. Chem. 2020, 16, 362–383, doi:10.3762/bjoc.16.35

• family of privileged chiral ligands in asymmetric catalysis [12]. In these compounds, the C2 axis of symmetry helps in increasing the selectivity of the formation of certain enantiomers by inhibiting other possible reaction pathways [93]. In particular, biarylphosphines and bidentate 2,2'-bis

Copper-promoted/copper-catalyzed trifluoromethylselenolation reactions

• Clément Ghiazza and
• Anis Tlili

Beilstein J. Org. Chem. 2020, 16, 305–316, doi:10.3762/bjoc.16.30

• ]. Noteworthy, depending on the nature of the bidentate ligand used, the corresponding copper complex could be isolated as monomer or dimer, and both were air-stable. Among the new complexes, the reactivity of [(bpy)CuSeCF3]2 in trifluoromethylselenolations was thoroughly investigated using a large panel of

Synthesis and herbicidal activities of aryloxyacetic acid derivatives as HPPD inhibitors

• Man-Man Wang,
• Hao Huang,
• Lei Shu,
• Jian-Min Liu,
• Jian-Qiu Zhang,
• Yi-Le Yan and
• Da-Yong Zhang

Beilstein J. Org. Chem. 2020, 16, 233–247, doi:10.3762/bjoc.16.25

• -dicarbonyl bidentate chelation with the active center metal, and 2) through favorable sandwich π–π stacking interactions between aromatic rings and the Phe360, Phe403 residues of the active site. Thus, 1,3-dicarbonyl and aromatic moieties are indispensable pharmacophores for potent HPPD-inhibiting compounds

• inhibitors. Initially, molecular docking studies were performed on two representative compounds, namely I39 and I40 [25], in order to explore their binding modes. The result revealed the presence of two main interactions, the sandwich π−π interaction and the bidentate interaction, which are similar to those

Palladium-catalyzed synthesis and nucleotide pyrophosphatase inhibition of benzo[4,5]furo[3,2-b]indoles

• Hoang Huy Do,
• Saif Ullah,
• Alexander Villinger,
• Joanna Lecka,
• Jean Sévigny,
• Peter Ehlers,
• Jamshed Iqbal and
• Peter Langer

Beilstein J. Org. Chem. 2019, 15, 2830–2839, doi:10.3762/bjoc.15.276

• ). Monodentate ligands, like XPhos, SPhos, DavePhos, RuPhos, or P(t-Bu)3·HBF4, were not effective in the reaction and gave product 5b in low yields. Bidentate phosphine ligands, such as BINAP, XantPhos, dppe, or dppf (Table 1), worked very well and allowed to improve the yield of 5b up to 75% (Table 1, entry 4

A chiral self-sorting photoresponsive coordination cage based on overcrowded alkenes

• Constantin Stuckhardt,
• Diederik Roke,
• Wojciech Danowski,
• Edwin Otten,
• Sander J. Wezenberg and
• Ben L. Feringa

Beilstein J. Org. Chem. 2019, 15, 2767–2773, doi:10.3762/bjoc.15.268

• interesting strategy to form responsive coordination complexes, as they feature a large geometric change upon switching [47]. Herein, we report a photoresponsive coordination cage with ligands based on a first generation molecular motor (Figure 1). Cages with a Pd2L4 composition are formed from bidentate

Current understanding and biotechnological application of the bacterial diterpene synthase CotB2

• Ronja Driller,
• Daniel Garbe,
• Norbert Mehlmer,
• Monika Fuchs,
• Keren Raz,
• Dan Thomas Major,
• Thomas Brück and
• Bernhard Loll

Beilstein J. Org. Chem. 2019, 15, 2355–2368, doi:10.3762/bjoc.15.228

• position of Mg2+B is identical to the structure of CotB2F107A·Mg2+B, but two coordinating water molecules have now been exchanged with two oxygen atoms of the diphosphate function of GGSDP. Upon binding of GGSDP, a bidentate salt bridge between D111 of the DDXD motif and R294 of the WXXXXXRY motif is

• bidentate salt bridge with D111 of the aspartate-rich motif, and two salt bridges to the diphosphate moiety derived from FGGDP (Figure 3 and Figure 5). Y295 establishes hydrogen bonds to the diphosphate moiety as well as to N220 of the NSE motif (Figure 5). In the closed conformation of the labdane-related

Recent advances in transition-metal-catalyzed incorporation of fluorine-containing groups

• Xiaowei Li,
• Xiaolin Shi,
• Xiangqian Li and
• Dayong Shi

Beilstein J. Org. Chem. 2019, 15, 2213–2270, doi:10.3762/bjoc.15.218

• derivatives (Scheme 11a). This process was carried out under the strongly binding bidentate 2-(pyridine-2-yl)isopropylamine (PIP) auxiliary. A range of substrates containing both aliphatic and benzylic C(sp3)–H bonds was finally converted to the corresponding fluorinated products with excellent

• substrates were successfully fluorinated with high enantioselectivities. In 2013, the Kesavan group [73] reported the use of tartrate-derived bidentate bisoxazoline-Cu(II) complexes for the enantioselective fluorination of aliphatic cyclic and acyclic β-ketoesters with up to 98% yields (Scheme 30). In this

• temperature (Scheme 64). Through reductive elimination from the (Ar)Pd(IV)-CF3 intermediate, the aryl C–CF3 bond is generated. Notably, the bidentate nitrogen-containing ligand is crucial to the achievement of this process. In the same year, Buchwald et al. [124] discovered a palladium-catalyzed

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• protein crystallizations. Due to the interest in interactions with proteins we have selected basic amino acids as chiral bidentate amines to interact with RSAs. We have also studied interactions of RSAs with chiral tetradentate ligands (tetraaminocavitands) in order to evaluate the influence of a chelate

• the context of formation of supramolecular complexes in polar environment, for which DMSO is most often a first-choice solvent. Interactions of RSA 1 with chiral cavitands 2 Having confirmed that RSA 1 forms well-defined complexes with chiral bidentate amines in polar solvents we next aimed at

• hydrodynamic radius of 11 Å. Similar to interactions of RSA 1 with bidentate amines (amino acid methyl esters), interactions with tetradenate amine (R)-2 lead to the diastereotopic splitting of the signals of the methylene bridges (CH2SO3−, f) and their substantial upfield shift (Δδ 0.25 ppm, Figure 6c). The

Recent advances on the transition-metal-catalyzed synthesis of imidazopyridines: an updated coverage

• Gagandeep Kour Reen,
• Ashok Kumar and
• Pratibha Sharma

Beilstein J. Org. Chem. 2019, 15, 1612–1704, doi:10.3762/bjoc.15.165

One-pot activation–alkynylation–cyclization synthesis of 1,5-diacyl-5-hydroxypyrazolines in a consecutive three-component fashion

• Christina Görgen,
• Katharina Boden,
• Guido J. Reiss,
• Walter Frank and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2019, 15, 1360–1370, doi:10.3762/bjoc.15.136

• (Figure 2) [26][27]. In addition, 1-acyl-5-hydroxypyrazolines are bidentate ligands for zinc complexes and by virtue of being ring tautomers of β-enolhydrazones they can also act as tridentate ligands for nickel [28] and tin [29][30] complexes. In contrast, dimethylzinc forms dimeric complexes where the 1

• -acyl-5-hydroxypyrazoline acts as a bidentate ligand [31]. Upon treatment with TMEDA mononuclear complexes with concomitant ring opening to give a seven-membered bidentate chelate are generated. Although numerous syntheses of pyrazolines [3][4][5] in general and 1-acyl-5-hydroxypyrazolines [24][25][26

Design of a double-decker coordination cage revisited to make new cages and exemplify ligand isomerism

• Sagarika Samantray,
• Sreenivasulu Bandi and
• Dillip K. Chand

Beilstein J. Org. Chem. 2019, 15, 1129–1140, doi:10.3762/bjoc.15.109

• ]. Complexation of cis-protected palladium(II), i.e., (PdL’) or bare palladium(II) with non-chelating bidentate ligands is known to afford a series of (PdL’)mLm or PdmL2m-type self-assembled coordination complexes [5]. Pd2L4-type cages are the simplest representatives among the PdmL2m-type complexes, yet most

Switchable selectivity in Pd-catalyzed [3 + 2] annulations of γ-oxy-2-cycloalkenones with 3-oxoglutarates: C–C/C–C vs C–C/O–C bond formation

• Yang Liu,
• Julie Oble and
• Giovanni Poli

Beilstein J. Org. Chem. 2019, 15, 1107–1115, doi:10.3762/bjoc.15.107

• . The effect of the solvent was then assessed. While no reaction took place in CH3CN (Table 1, entry 3), DMF (Table 1, entry 4) and DMSO (Table 1, entry 5) allowed the formation of 4a in 66% and 75% yield, respectively. The use of another bidentate phosphine such as dppe gave no improvement (Table 1

Towards the preparation of synthetic outer membrane vesicle models with micromolar affinity to wheat germ agglutinin using a dialkyl thioglycoside

• Dimitri Fayolle,
• Nathalie Berthet,
• Bastien Doumeche,
• Olivier Renaudet,
• Peter Strazewski and
• Michele Fiore

Beilstein J. Org. Chem. 2019, 15, 937–946, doi:10.3762/bjoc.15.90

• alkyl chain is used (as in 8). These observations suggest that the herein synthesized bidentate analogues of GlcNAc would interact with WGA differently than compounds bearing one sugar residue. The short distance between the two sugar moieties as well as the presence of the non-polar alkyl chains seems

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• appropriate metal ion(s) and ligand(s) has been demonstrated in various reports [46][47][48][49]. In Figure 1, a comprehensive framework is shown in which nanoscale architectures are built from various monodentate (pyridine; Figure 1a), bidentate (bipyridine, phenanthroline; Figure 1b) and tridentate

Catalysis of linear alkene metathesis by Grubbs-type ruthenium alkylidene complexes containing hemilabile α,α-diphenyl-(monosubstituted-pyridin-2-yl)methanolato ligands

• Tegene T. Tole,
• Johan H. L. Jordaan and
• Hermanus C. M. Vosloo

Beilstein J. Org. Chem. 2019, 15, 194–209, doi:10.3762/bjoc.15.19

• bidentate ligands investigated by a number of research groups [5]. The pyridinyl alcohol found its way to the Grubbs-type complexes from research by Van Der Schaaf and co-workers on the Schrock-type analogues [6][7]. Grubbs 1-type complexes 3a–f (Figure 2) were used to catalyse the ring-closing metathesis

• an increase in IPs) indicates decomposition of the precatalyst to active isomerisation species, probably metal hydride species. In our NMR study no indication of the existence of metal hydride species was found. Conclusion The aim of our research is to control the Ru–N bond strength of the bidentate

• bidentate pyridinyl-alcoholato ligand by Me and OMe groups. We synthesised the 3-, 4-, and 5-methyl and 3-methoxy-substituted 5d precatalysts. The catalytic activity, selectivity and stability results of the Me- and OMe-substituted 5d precatalysts, in 1-octene metathesis, showed promising results at high

Ruthenium-based olefin metathesis catalysts with monodentate unsymmetrical NHC ligands

• Veronica Paradiso,
• Chiara Costabile and
• Fabia Grisi

Beilstein J. Org. Chem. 2018, 14, 3122–3149, doi:10.3762/bjoc.14.292

• symmetrical counterparts fail or show poor efficiency [5][6]. Moreover, the use of catalysts incorporating bidentate unsymmetrical NHCs has allowed for significant enhancements in the field of both asymmetric and Z-selective olefin metathesis reactions [7][8][9]. The aim of the present review is to provide a

Pd-Catalyzed microwave-assisted synthesis of phosphonated 13α-estrones as potential OATP2B1, 17β-HSD1 and/or STS inhibitors

• Rebeka Jójárt,
• Szabolcs Pécsy,
• György Keglevich,
• Mihály Szécsi,
• Réka Rigó,
• Csilla Özvegy-Laczka,
• Gábor Kecskeméti and
• Erzsébet Mernyák

Beilstein J. Org. Chem. 2018, 14, 2838–2845, doi:10.3762/bjoc.14.262

• Pd sources, namely Pd(PPh3)4 or Pd(OAc)2 were used, the latter without the addition of any mono- or bidentate P-ligand. Although Et3N can usually be used successfully, the dealkylation of the phosphite reagent may occur. In order to avoid this unwanted side reaction, K2CO3 was also involved in

Cobalt- and rhodium-catalyzed carboxylation using carbon dioxide as the C1 source

• Tetsuaki Fujihara and
• Yasushi Tsuji

Beilstein J. Org. Chem. 2018, 14, 2435–2460, doi:10.3762/bjoc.14.221

• -phenanthroline) as the catalyst, 4a-Me was obtained in 86% yield after esterification. Other bidentate ligands such as bpy, phen, and dppe were not suitable for this reaction. Control experiments revealed that both the Co catalyst and the Mn reductant were indispensable to the reaction. The carboxylation of

• . reported that a Rh complex with a suitable bidentate ligand was an efficient catalyst for the [2 + 2 + 2] cycloaddition reaction (Scheme 39) [79]. The reaction of 43a was performed using 20 mol % [Rh(cod)2]BF4 and a bidentate phosphine in 1,2-dichloroethane at room temperature. Prior to the addition of 43a

Water-soluble SNS cationic palladium(II) complexes and their Suzuki–Miyaura cross-coupling reactions in aqueous medium

• Alphonse Fiebor,
• Richard Tia,
• Banothile C. E. Makhubela and
• Henok H. Kinfe

Beilstein J. Org. Chem. 2018, 14, 1859–1870, doi:10.3762/bjoc.14.160

• the formation of the corresponding pincer complexes 17c and 17d directly without formation of an isolable bidentate intermediate observed during the synthesis of complexes 17a and 17b. Furthermore, the successful synthesis of the pincer complexes was confirmed by X-ray crystallography and the

• (93%, 80% and 75% for the 1st, 2nd and 3rd run, respectively) considering the fact that some of it could have been extracted along with the product and the results are summarised in Figure 5. Since the bidentate complexes 20a and 20b are also potential catalysts in their own right, the catalytic

• and complexes 17a–d. Proposed mechanism of the Suzuki–Miyaura coupling reaction using pincer complex 17d. Investigation on the reusability of the catalyst. Suzuki–Miyaura coupling reaction catalysed by the SN-bidentate complex 20a. Crystal data and structure refinement parameters for 17d. Optimization

Hypervalent organoiodine compounds: from reagents to valuable building blocks in synthesis

• Gwendal Grelier,
• Benjamin Darses and
• Philippe Dauban

Beilstein J. Org. Chem. 2018, 14, 1508–1528, doi:10.3762/bjoc.14.128

• cyclic diaryl-λ3-iodanes (Scheme 26) [66]. The palladium phosphine ligand plays a crucial role as a bidentate ligand with a bite angle greater than 100° such as DPEphos (104°) or Xantphos (108°) significantly improves the yields. The reaction applies to a series of anilines and aliphatic amines, but