Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• iodide and silver oxide. The protected adenine base was regenerated by treatment with ammonia followed by benzoylation. Once the methyl group was incorporated into these ribonucleosides, the TIPDS group was selectively removed by tetrabutylammonium fluoride (TBAF) or hydrochloric acid treatment, followed

Synthesis of bis(aryloxy)fluoromethanes using a heterodihalocarbene strategy

• Carl Recsei and
• Yaniv Barda

Beilstein J. Org. Chem. 2021, 17, 813–818, doi:10.3762/bjoc.17.70

• led us to attempt to displace a single fluoride ion from 5 with the anion of 6 (Scheme 3), with fluorophilic calcium hydroxide as a base, in analogy to a report where phenoxide moieties are introduced to the anomeric position of a fluorinated sugar [9]. This gave only traces of 4, while adjustments in

Total synthesis of pyrrolo[2,3-c]quinoline alkaloid: trigonoine B

• Takashi Nishiyama,
• Erina Hamada,
• Daishi Ishii,
• Yuuto Kihara,
• Nanase Choshi,
• Natsumi Nakanishi,
• Mari Murakami,
• Kimiko Taninaka,
• Noriyuki Hatae and
• Tominari Choshi

Beilstein J. Org. Chem. 2021, 17, 730–736, doi:10.3762/bjoc.17.62

• -iodoaniline (12) and 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1-[tris(1-methylethyl)silyl]-1H-pyrrole (13) according to Pratt’s conditions (Scheme 3) [29]. Subsequently, to remove the triisopropylsilyl (TIPS) protecting group, compound 14 was treated with tetra-n-butylammonium fluoride (TBAF) in THF

Synthesis of dibenzosuberenone-based novel polycyclic π-conjugated dihydropyridazines, pyridazines and pyrroles

• Ramazan Koçak and
• Arif Daştan

Beilstein J. Org. Chem. 2021, 17, 719–729, doi:10.3762/bjoc.17.61

• classic organic dyestuffs. In that study, two highly fluorescent dibenzosuberenone-based dihydropyridazine dyes, 3a,b, were synthesized, and it was found that they can be used as a selective and sensitive sensor of fluoride anions (Scheme 1, Table 1) [55]. In another work, we reported the design

• tautomerization A with a [1,7]-H shift 13 would be formed. Alternatively, in the second mechanism, 13 is thought to occur by tautomerization B and a [1,5]-H shift (Scheme 9). Photophysical properties In our previous work, we examined the photophysical and fluoride sensing properties of dihydropyridazine

β-Lactamase inhibition profile of new amidine-substituted diazabicyclooctanes

• Zafar Iqbal,
• Lijuan Zhai,
• Yuanyu Gao,
• Dong Tang,
• Xueqin Ma,
• Jinbo Ji,
• Jian Sun,
• Jingwen Ji,
• Yuanbai Liu,
• Rui Jiang,
• Yangxiu Mu,
• Lili He,
• Haikang Yang and
• Zhixiang Yang

Beilstein J. Org. Chem. 2021, 17, 711–718, doi:10.3762/bjoc.17.60

• derivative B22 which was treated with tetrabutylammonium fluoride (TBAF) in THF to obtain the hydroxy derivative C22. Compound C22 was converted to the sodium salt of A22 by using the procedure described for derivative A1. Analogously, compound A23 was prepared starting from 4-aminothiazole-2-carboxylic acid

α,γ-Dioxygenated amides via tandem Brook rearrangement/radical oxygenation reactions and their application to syntheses of γ-lactams

• Mikhail K. Klychnikov,
• Radek Pohl,
• Ivana Císařová and
• Ullrich Jahn

Beilstein J. Org. Chem. 2021, 17, 688–704, doi:10.3762/bjoc.17.58

• -bottomed Schlenk flask and evaporated. The crude residue was dissolved in THF (5 mL), the reaction mixture was cooled to 0 °C in an ice/water bath, tetrabutylammonium fluoride (1 M solution in THF, 0.96 mL, 0.96 mmol) was added and the mixture was stirred at this temperature for 30 min. The reaction was

[2 + 1] Cycloaddition reactions of fullerene C₆₀ based on diazo compounds

• Yuliya N. Biglova

Beilstein J. Org. Chem. 2021, 17, 630–670, doi:10.3762/bjoc.17.55

• nitrophenylfullerenes 48 and 50. Synthesis of conjugate 52 of C60 with ethyl diazo(4-nitrophenyl)acetate. Synthesis of fluoride-containing phenylmethanofullerenes 53–56. Synthesis of “bucky ligands” 57–60. The synthetic route to methanofullerene-based palladium–bisaminoaryl complex 62. Synthesis of N-containing

Valorisation of plastic waste via metal-catalysed depolymerisation

• Francesca Liguori,
• Carmen Moreno-Marrodán and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2021, 17, 589–621, doi:10.3762/bjoc.17.53

• and 23.1 equiv CH3OH. The potassium fluoride catalyst could be reused in up to three runs with no change in performance, while a 50% drop of the yield was observed afterwards. Me-La is a low-toxic chemical used as substitute for hydrocarbon solvents, with applications in the field of paints, lacquers

Synthesis of trifluoromethyl ketones by nucleophilic trifluoromethylation of esters under a fluoroform/KHMDS/triglyme system

• Yamato Fujihira,
• Yumeng Liang,
• Makoto Ono,
• Kazuki Hirano,
• Takumi Kagawa and
• Norio Shibata

Beilstein J. Org. Chem. 2021, 17, 431–438, doi:10.3762/bjoc.17.39

• ], has dramatically improved the prospects. One of the problems facing the treatment of HCF3 for nucleophilic trifluoromethylation reactions is the low stability of the directly generated CF3 anion (CF3−) for decomposing to difluorocarbene (:CF2) and fluoride (F−) (Scheme 1a). Due to the formation of

• highly stable fluoride salts (MF), the breakdown of CF3− into difluorocarbene in the presence of alkali (M+) and other metal cations is favored. In earlier studies, the solvent N,N-dimethylformamide (DMF), was essential for nucleophilic trifluoromethylation by HCF3 since DMF acts as a CF3 anion reservoir

• . Trifluoromethyl ketones. a) Hydrolysis of trifluoromethyl ketones. b) Selected examples of biologically active trifluoromethyl ketones. Chemistry of the CF3 anion generated from HCF3. a) Decomposition of the trifluoromethyl anion to difluorocarbene and fluoride. b) A hemiaminaloate adduct of CF3 anion to DMF. c

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• species [1]. This reflects its low bioavailability, as it is typically found in insoluble minerals, and its physicochemical properties, in particular its high redox potential and the poor reactivity of the fluoride ion in aqueous solution. Despite its near-absence in biology, it is a particularly

• biosynthesis through hBBOX-catalysed GBBNF hydroxylation, both in vitro and in cell lysates [43]. Moreover, by using a competitive substrate for the enzyme, inhibition experiments could be directly employed to determine the IC50 values in the basis of fluoride release, and the extent of GBBNF turnover

• these fluorometabolites, and was instrumental in the discovery of the very first fluorinase, which catalyses the production of 5’-fluoro-5’-deoxyadenosine (5-FDA) from fluoride ion and S-adenosylmethionine (SAM) [1]. While cumbersome as a tool for screening for new fluorometabolites in multiple strains

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

• were increased when potassium fluoride and 18-crown-6 were added to the reaction mixture [20]. Dehydrohalogenation of dichlorodifluoromethane under phase-transfer catalysis: Difluorocarbene can be generated from chlorodifluoromethane by phase-transfer catalysis (PTC) through the reaction with NaOH or

• this method was able to add at moderate temperatures to unreactive alkenes such as butyl acrylate (26) (Scheme 12). Fluoride ions can initiate a chain process, whereby TFDA undergoes desilylation which is followed by a subsequent decarboxylation, and loss of SO2 to form difluorocarbene :CF2 and F−; NaF

• -methylstyrene (7) by MDFA gave the corresponding difluorocyclopropane 8 in 82% NMR yield. The conditions used with MDFA were similar to those for TFDA. Minimal amounts of solvent were applied, keeping the concentrations high. The fluoride trap TMSCl which is both corrosive and volatile, could be replaced by

Total synthesis of decarboxyaltenusin

• Lucas Warmuth,
• Aaron Weiß,
• Marco Reinhardt,
• Anna Meschkov,
• Ute Schepers and
• Joachim Podlech

Beilstein J. Org. Chem. 2021, 17, 224–228, doi:10.3762/bjoc.17.22

• been used in a 1.2-fold excess) turned out to be very laborious. Moreover, the subsequent deprotection to the natural product 1 could not be achieved sufficiently: After treatment of 10a with tetrabutylammonium fluoride (TBAF), the signals of 1 could be detected in a 1H NMR spectrum of the crude

Benzothiazolium salts as reagents for the deoxygenative perfluoroalkylthiolation of alcohols

• Armin Ariamajd,
• Nils J. Gerwien,
• Benjamin Schwabe,
• Stefan Dix and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2021, 17, 83–88, doi:10.3762/bjoc.17.8

• heavily fluorinated thiolate anions and the potential for deleterious side-reactions resulting from β-fluoride elimination [28][29][30][31][32][33][34]. Only a handful of perfluoroalkylthiolate salts are known and, to the best of our knowledge, only one general direct nucleophilic perfluoroalkylthiolation

• affords the key electrophilic 2-alkoxybenzothiazolium species A and the perfluoroalkylthiolate anion. Nucleophilic substitution then affords product 3 and thiocarbamate byproduct B. As a side-reaction, β-fluoride elimination from the perfluoroalkylthiolate anion can occur, leading to a thiocarbonyl

• fluoride species, which can subsequently react with the alcohol, delivering thionoester 4. β-Fluoride elimination is a known decomposition pathway of −SCF3 and has even been exploited in synthetic trifluoromethylthiolation and fluorination processes [32][33][34]. The formation of the side-product 4a could

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• synthetic efforts toward neooxazolomycin (4), oxazolomycin A (5a), and related antibiotics [17]. The recent review of Lee has mainly focused on the application of copper(I) salt and fluoride-promoted Stille coupling reactions in the synthesis of bioactive molecules including inthomycins A–C (1–3) [18]. The

• %). Deprotection of the TBDMS ether of stannane 40 with tetra-n-butylammonium fluoride (TBAF) in THF and then subsequent Swern oxidation of the crude alcohol gave aldehyde 41 in 71% yield. The aldehyde 41 was treated with ethyl isobutyrate (42) in the presence of LDA to afford the aldol adduct (Z)-(rac)-43 in the

• total synthesis of naturally occurring inthomycin C ((–)-3) in excellent yield and enantiopurity by employing a cationic oxazaborolidinium-catalyzed asymmetric Mukaiyama aldol reaction and Stille coupling as the key steps (Scheme 7). Treatment of compound 75 with tetra-n-butylammonium fluoride (TBAF) in

Recent progress in the synthesis of homotropane alkaloids adaline, euphococcinine and N-methyleuphococcinine

• Dimas J. P. Lima,
• Antonio E. G. Santana,
• Michael A. Birkett and
• Ricardo S. Porto

Beilstein J. Org. Chem. 2021, 17, 28–41, doi:10.3762/bjoc.17.4

• acid in toluene. After 5 minutes, 1.2 equiv of tributyltin fluoride was added to intermediate A, and at the end of the process, 63a and 63b were obtained after chromatographic purification with 81% yield for 63a and 74% yield for 63b. Finally, the alkenes were oxidized in the presence of osmium

Deoxyfluorination of acyl fluorides to trifluoromethyl compounds by FLUOLEAD^®/Olah’s reagent under solvent-free conditions

• Yumeng Liang,
• Akihito Taya,
• Zhengyu Zhao,
• Norimichi Saito and
• Norio Shibata

Beilstein J. Org. Chem. 2020, 16, 3052–3058, doi:10.3762/bjoc.16.254

• developed various efficient methodologies for the electrophilic [14][15], nucleophilic [16], and radical [17] trifluoromethylation reactions for more than a decade. In recent years, we also reported the direct introduction of an acyl fluoride unit into aromatic compounds by the Pd-catalyzed cross-coupling

• fluorides have become available in recent years [19][20][21][22][23]. In this context, we were interested in the functional transformation of an acyl fluoride unit into a CF3 motif. Despite the current rich availability of acyl fluorides and a strong market demand for trifluoromethyl compounds, synthetic

• and not as fluorination of acyl fluorides. Thus, the acyl fluoride moiety is commonly sacrificed as a “leaving group” in reactions. On the other hand, the transformation to CF3 derivatives from carboxylic acids are traditionally examined. In 1960, Engelhardt [27] performed the deoxyfluorination of

Controlled decomposition of SF₆ by electrochemical reduction

• Sébastien Bouvet,
• Bruce Pégot,
• Stéphane Sengmany,
• Erwan Le Gall,
• Eric Léonel,
• Anne-Marie Goncalves and
• Emmanuel Magnier

Beilstein J. Org. Chem. 2020, 16, 2948–2953, doi:10.3762/bjoc.16.244

• +/Fc. The exact number of electrons for the full consumption of sulfur hexafluoride was determined and this gas further quantitatively transformed into environmentally benign fluoride anion and sulfur by electrochemical reduction. Keywords: electroreduction; fluoride anion; redox potential; sulfur

• disappearance of SF6 after 6 hours as well as all the fluorinated organic compounds. The only peak detected by 19F NMR is around −153 ppm. This value corresponds to the classical chemical shift range of a fluoride anion. Due to its broad appearance, we can postulate the association with cations coming from the

• ]: They can associate themselves with the F− anions and generate bifluoride HF2 anions or even polyfluorides F(HF). The presence of fluoride anions can produce a Hoffman elimination on the alkyl chain of TBA giving rise to tributylamine, butene, and HF. We can suppose that the anion S2− could also be

Fluorine effect in nucleophilic fluorination at C4 of 1,6-anhydro-2,3-dideoxy-2,3-difluoro-β-D-hexopyranose

• Danny Lainé,
• Vincent Denavit,
• Olivier Lessard,
• Laurie Carrier,
• Charles-Émile Fecteau,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2020, 16, 2880–2887, doi:10.3762/bjoc.16.237

• retention of configuration was unexpected since the fluoride anion would have to approach the more sterically hindered β-face. To account for the retention of configuration (minor product) in the fluorination of compound 13, we proposed the involvement of an oxiranium-like intermediate A (Figure 3b

• reaction mixture was treated under acidic conditions and furnished the desired acetylated analogue 23 in 54% over 3 steps. This synthetic sequence represents a useful alternative to DAST or TBAF (tetrabutylammonium fluoride) that lead to elimination byproducts. Finally, after acetates removal, reduction of

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• PBIm12 was also examined in the presence of many other anions such as iodide, bromide, fluoride, acetate, bicarbonate, sulfate, etc. and all of them exhibited only negligible changes in the excimeric emission (Supporting Information File 1, Figure S14). ATP detection in the presence of 150 mM NaCl In

Optical detection of di- and triphosphate anions with mixed monolayer-protected gold nanoparticles containing zinc(II)–dipicolylamine complexes

• Lena Reinke,
• Julia Bartl,
• Marcus Koch and
• Stefan Kubik

Beilstein J. Org. Chem. 2020, 16, 2687–2700, doi:10.3762/bjoc.16.219

• . AuNP-based probes for inorganic anions, for example, can serve to monitor the water quality [14][15]. An example is the probe for halides that was described by the Sessler group. It comprised AuNPs with immobilized calix[4]pyrrole residues that are known to interact with chloride and fluoride. The

Vicinal difluorination as a C=C surrogate: an analog of piperine with enhanced solubility, photostability, and acetylcholinesterase inhibitory activity

• Yuvixza Lizarme-Salas,
• Alexandra Daryl Ariawan,
• Ranjala Ratnayake,
• Hendrik Luesch,
• Angela Finch and
• Luke Hunter

Beilstein J. Org. Chem. 2020, 16, 2663–2670, doi:10.3762/bjoc.16.216

• = tetrahydrofuran, AD-mix-α = commercially available asymmetric dihydroxylation reagent, TBAF = tetrabutylammonium fluoride, DeoxoFluor = bis(2-methoxyethyl)aminosulfur trifluoride. Synthesis of compound 2 via a stepwise fluorination approach (ester series). DIC = diisopropylcarbodiimide, HOBt

Synthesis and characterization of S,N-heterotetracenes

• Astrid Vogt,
• Florian Henne,
• Christoph Wetzel,
• Elena Mena-Osteritz and
• Peter Bäuerle

Beilstein J. Org. Chem. 2020, 16, 2636–2644, doi:10.3762/bjoc.16.214

• –Hartwig amination of dibromide 7 with n-hexylamine in the presence of sodium tert-butoxide as base and Pd(dba)2/dppf as the catalytic system. The TIPS group was removed from Hex-SN4 8 upon treatment with tetra-n-butylammonium fluoride (TBAF) and the parent system Hex-SN4 9 was obtained in 80% yield

Activation of pentafluoropropane isomers at a nanoscopic aluminum chlorofluoride: hydrodefluorination versus dehydrofluorination

• Maëva-Charlotte Kervarec,
• Thomas Braun,
• Mike Ahrens and
• Erhard Kemnitz

Beilstein J. Org. Chem. 2020, 16, 2623–2635, doi:10.3762/bjoc.16.213

• such as hydrodefluorinations and dehydrofluorinations were observed, followed by hydroarylation and Friedel–Crafts-type reactions under mild conditions. Keywords: aluminum fluoride; C–F bond activation; dehydrofluorination; hydrodefluorination; hydrofluorocarbons; Introduction Hydrofluorocarbons

• pentafluoropropanes (HFC-245 isomers) using chromia-based catalysts, or metal chloride/fluoride (AlF3, MgF2)-supported catalysts at elevated temperatures (350 °C) [11][14][15][17][18]. The group of Lu recently reported the gas-phase transformation of 1,1,1,3,3-pentafluoropropane (HFC-245eb) into 1,3,3,3

• -tetrafluoropropene (HFO-1234ze) using mesoporous nanoscopic aluminum fluoride-based catalysts [19]. The catalysts were prepared via a sol–gel process in the presence of polyols, allowing for the evolution of a large surface area and improved acidic properties when compared to fluorinated Cr2O3 or traditional β-AlF3

Synthesis of novel fluorinated building blocks via halofluorination and related reactions

• Attila Márió Remete,
• Tamás T. Novák,
• Melinda Nonn,
• Matti Haukka,
• Ferenc Fülöp and
• Loránd Kiss

Beilstein J. Org. Chem. 2020, 16, 2562–2575, doi:10.3762/bjoc.16.208

• process, an alkene reacts with a halogen cation to form a halonium ion, which immediately undergoes ring opening by fluoride to form a vicinal halofluoride (see Scheme 1). The overall result is an anti-addition of the XF moiety (X = Cl, Br, I) across the double bond. Since many nucleophilic fluorine

• transformation, and COOH→CF3 transformation), is also an important nucleophilic fluorination method [2][3][4][5][10][11][18]. The synthesis of fluorinated compounds via deoxyfluorination [21][22][23][24][25][26][27][28][29][30] or utilizing sulfur fluoride deoxyfluorinating reagents [31][32] is a highlighted

• topic. It is notable that halofluorination reactions applying sulfur fluoride deoxyfluorinating reagents as fluoride sources are practically unknown [33], but analogous reactions with α-fluoroamines (another class of deoxyfluorinating reagents) were reported [20]. As a result, our main aim was to