Nucleophile-induced ring contraction in pyrrolo[2,1-c][1,4]benzothiazines: access to pyrrolo[2,1-b][1,3]benzothiazoles

• Ekaterina A. Lystsova,
• Maksim V. Dmitriev,
• Andrey N. Maslivets and
• Ekaterina E. Khramtsova

Beilstein J. Org. Chem. 2023, 19, 646–657, doi:10.3762/bjoc.19.46

• intermediates D [57], which underwent intramolecular nucleophilic substitution of the chloro substituent at C3a position with S5 [58] to give intermediates E. Then, intermediates E readily decarbonylated [59][60] to afford compounds 17 (Scheme 21). We suppose that in the reaction of APBTTs 1 with nucleophiles

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• Peter Kisszekelyi Radovan Sebesta Department of Organic Chemistry, Faculty of Natural Sciences, Comenius University Bratislava, Mlynská dolina, Ilkovičova 6, 842 15 Bratislava, Slovakia 10.3762/bjoc.19.44 Abstract Metal enolates are useful intermediates and building blocks indispensable in many

• organic synthetic transformations. Chiral metal enolates obtained by asymmetric conjugate additions of organometallic reagents are structurally complex intermediates that can be employed in many transformations. In this review, we describe this burgeoning field that is reaching maturity after more than 25

• . These transformations combine several reactions into a sequence that uses functionalities generated in previous steps without isolating intermediates [1]. Stabilized carbon-based nucleophiles, or in other words, conjugate bases of weak C–H acids, are termed enolates, and they participate in a large

Direct C2–H alkylation of indoles driven by the photochemical activity of halogen-bonded complexes

• Martina Mamone,
• Giuseppe Gentile,
• Jacopo Dosso,
• Maurizio Prato and
• Giacomo Filippini

Beilstein J. Org. Chem. 2023, 19, 575–581, doi:10.3762/bjoc.19.42

• -electron-transfer (BET), a suitable leaving group (LG) needs to be included in one of the precursors. In this manner, reactive intermediates (e.g., radical species) may be generated in solution through the irreversible fragmentation of the substrates [15][21][22]. These intermediates eventually react to

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• the case of TS2_1 and TS2_2 to the intermediates Int3_1 and Int3_2. Afterwards, the Cu–C bond is broken, and a Cu–O bond is formed. CuI is transferred to the oxygen atom from the phosphonate group, yielding Int4_1 and Int4_2. In the case of TS2_3 and TS2_4, the addition proceeds smoothly towards

• Int4_3 and Int4_4 without further intermediates (Scheme 7 and Scheme 8). Extrusion of a catalyst yields Pr1, Pr2, Pr3 and Pr4 as presented in Scheme 8. As shown in Table 2, the formation of the enantiomeric set Pr1 and Pr3 (ΔG = −44.6 and −44.1 kcal·mol−1) is slightly more favorable than the formation of

• Int2 yielding Int4_3 and Int4_4 without further intermediates. Formation of the products Pr1 to Pr4. Optimization of the reaction conditionsa. Change in Gibbs free energy ΔG (kcal∙mol−1) from the CuI-catalyzed cyclopropanation of the diazo compound with styrene for possible stereoisomers Pr1 to Pr4

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• elimination to generate ring-opened intermediates (Figure 2c). Fortunately, the metal center can be tuned to promote or hamper the β-H elimination, providing two routes for reaction propagation: ring opening and interception of the ring-opened intermediate or functionalization of the alkyl metal intermediate

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• would give compounds 12 and 13. A coupling reaction would give the corresponding diaryl ether Int-2, in a similar way to that suggested by Pettit, which could be selectively reduced to afford the corresponding seco-acid (intermediates Int-3 and Int-4). Subsequent macrolactonization would give the

• , and the formal synthesis of 2 was achieved after 8 steps with an overall yield of 4.5%. Rychnovsky and Hwang hypothesized that the low yields from the Mitsunobu reaction in the previous synthesis of compound 2 were linked to the instability of the allylic oxyphosphonium ion formed with intermediates

• combretastatin D on the use of computational calculations in order to find the intermediates with the lowest torsional energy for the cyclization step [43][44][45]. The authors came to the conclusion that both the formation of the double bond in compound 2 and the formation of the epoxide in compound 1 would

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• transborylation in catalysis (Scheme 6) [69]. Reactive intermediates were characterised and BH3 was observed to be generated in situ by the decomposition of HBpin. The proposed catalytic cycle involved nucleophile-promoted decomposition of HBpin to various borohydride species 19, which reacted with the BH3

Synthesis and reactivity of azole-based iodazinium salts

• Thomas J. Kuczmera,
• Annalena Dietz,
• Andreas Boelke and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 317–324, doi:10.3762/bjoc.19.27

• compounds based on azol-based iodazinium as reactive intermediates. Most interestingly, functionalization of the heteroarene salts was achieved without an undesired attack of the delicate C–I bond at the hypervalent iodine center. Experimental General procedure for the synthesis of azoiodazinium salts

Continuous flow synthesis of 6-monoamino-6-monodeoxy-β-cyclodextrin

• János Máté Orosz,
• Dóra Ujj,
• Petr Kasal,
• Gábor Benkovics and
• Erika Bálint

Beilstein J. Org. Chem. 2023, 19, 294–302, doi:10.3762/bjoc.19.25

• modified CDs for a long time. From the synthetic point of view, the most important derivatives are those versatile intermediates that can be effectively transformed according to the requirements of the specific application. The modification of a monosubstituted CD with a suitable functional group is an

• corresponding carboxylic acid derivatives [20]. An alternative strategy to overcome the difficulties associated with the preparation of mono-6-O-tosyl-CD intermediates is the direct preparation of 6-monoaldehyde-CD with Dess–Martin periodinane in a fairly good yield of 85%, which can be considered the most

• is simple and toxic or unstable intermediates are easier to handle, making the overall process safer. To the best of our knowledge, there is no publication on the continuous flow monosubstitution of CD derivatives. In this paper, first we wished to summarize the batch synthesis of 6A-O-(p

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• used this strategy to construct both A and B rings (Scheme 18) [50]. 2-Methylcyclopentenone 16 was selected as a suitable A-ring starting material for the synthesis of ophiobolin A (8) (Scheme 18). Sequential modulations resulted in dienyne intermediates 102 and 103, the latter presenting a

An efficient metal-free and catalyst-free C–S/C–O bond-formation strategy: synthesis of pyrazole-conjugated thioamides and amides

• Shubham Sharma,
• Dharmender Singh,
• Sunit Kumar,
• Vaishali,
• Rahul Jamra,
• Naveen Banyal,
• Deepika,
• Chandi C. Malakar and
• Virender Singh

Beilstein J. Org. Chem. 2023, 19, 231–244, doi:10.3762/bjoc.19.22

• and pharmaceutical molecules such as N-cyclohexylethyl-ETAsV [44], carbimazole, methimazole, propylthiouracil [45], and closthioamide [46] (Figure 1). Moreover, they also find widespread applications as intermediates for the construction of five- and six-membered heterocyclic compounds [47] and active

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• Houchao Xu Jeroen S. Dickschat Kekulé-Institute of Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany 10.3762/bjoc.19.18 Abstract Germacranes are important intermediates in the biosynthesis of eudesmane and guaiane sesquiterpenes. After their

• initial formation from farnesyl diphosphate, these neutral intermediates can become reprotonated for a second cyclisation to reach the bicyclic eudesmane and guaiane skeletons. This review summarises the accumulated knowledge on eudesmane and guaiane sesquiterpene hydrocarbons and alcohols that

• higher structural complexity. It was already noticed in the 1950s by Ruzicka [9] and Barton and de Mayo [10], followed by a more detailed elaboration by Hendrickson [11], that 10-membered sesquiterpenes such as hedycaryol (3) can serve as neutral intermediates that can react upon reprotonation to 6-6

Total synthesis of insect sex pheromones: recent improvements based on iron-mediated cross-coupling chemistry

• Eric Gayon,
• Guillaume Lefèvre,
• Olivier Guerret,
• Adrien Tintar and
• Pablo Chourreu

Beilstein J. Org. Chem. 2023, 19, 158–166, doi:10.3762/bjoc.19.15

• situ-formed intermediates, are gathered in Table 2. The beneficial role of the NMP co-solvent on the alkyl–alkenyl cross-coupling yield reported by Cahiez (Scheme 2b) and considerably used ever since was explained at a molecular level by Neidig in 2018. It was demonstrated that NMP did not act as a

• transmetallation step, and not in the coordination of the iron-containing intermediates [36][37]. The use of magnesium alkoxide salts, either as an ω-functionalization of the nucleophilic partner (Scheme 4) or as an external molecular additive such as EtOMgCl (Scheme 5), also likely proceeds similarly to the NMP

• RMgX:EtOMgX ratios, minor species possibly featuring alkoxide stabilized ferrous [FeII]-OEt intermediates were observed by paramagnetic 1H NMR spectroscopy. In line with this result, Fleischer and Lefèvre also recently demonstrated that the anionic thiolate leaving group EtS– released in Fukuyama cross

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• ). The use of the much stronger triflic acid actually paradoxically protects the rather sensitive indoline cycloaddition products such as the dearomatized product 100, derived from skatole (99), by keeping the adduct and all intermediates in their protonated form throughout the progress of the reaction

• use in intermolecular cycloadditions, as the putative gold(I)-coordinated intermediates like 112 are indeed quite similar to those expected to arise from dihydrodithiin alcohol 90 (see Scheme 19) [112]. However, our results with the simple 2-ethynyl-1,3-dithiolane (116) immediately showed that the

• nucleophile to the putative sulfonium-type dithiin intermediates such as 134. It is noteworthy that these Pummerer rearrangement-generated sulfonium intermediates do not give the expected fully unsaturated dithiin rings, but can be captured by nucleophiles before elimination of a proton happens. Conclusion In

Organophosphorus chemistry: from model to application

• György Keglevich

Beilstein J. Org. Chem. 2023, 19, 89–90, doi:10.3762/bjoc.19.8

• related N-heterocycles to prepare the respective bisphosphonate derivatives that were transformed to the corresponding diphosphonic acids. The Pudovik addition is still an evergreen reaction as it leads to α-hydroxyphosphonates that are versatile intermediates in organophosphorus chemistry. Yang et al

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• pyrrole-fused heterocyclic tricycles [33]. The involvement of Nazarov and in particular aza-Nazarov reactions in the cyclization of alkynes that go through metal carbene intermediates has recently been reviewed by Gao and co-workers [34]. In 2019, we reported a highly effective aza-Nazarov cyclization for

• provide the minor diastereomer 22. In the case of aza-Nazarov reactions of 3,4-dihydroisoquinoline derivatives, an E–Z isomerization of the iminium intermediates is not possible due to their cyclic nature, which leads to the formation of the aza-Nazarov products as single diastereomers. The aza-Nazarov

• differences between acyl chlorides 23 and 6 in the examined aza-Nazarov cyclizations can be understood when the electron densities on the two olefin moieties are considered. Indeed, while both of the proposed intermediates 29 and 9 (Scheme 1) can benefit from the β-silicon stabilization effect, the olefinic

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• calculations, even for the challenging intermediates anti and syn-31. The authors of that study chose to optimize the structures using the M06-2X functional with the 6-311++G(d,p) basis set, but we found that the smaller 6-31+G(d,p) basis set that we had been using was adequate. Each of the methods allowed the

Modern flow chemistry – prospect and advantage

• Philipp Heretsch

Beilstein J. Org. Chem. 2023, 19, 33–35, doi:10.3762/bjoc.19.3

• - and postrun fractions are discarded [6], leading to loss of reagent and substrate as well as to increased waste. This is even less tolerable when small quantities of precious intermediates from multistep routes are to be employed, as is typically the case in projects of the pharmaceutical industry and

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• intermediates closely related to the biosynthetic origins of the family. On the other hand, radical retrosynthetic disconnections on common scaffolds are much less predictable and rarely similar due to the plethora of radical chemical transformations available nowadays. Although radicals stopped being

• –cyclization of common synthetic intermediates 94 and 95 (Scheme 8). Compound 94 was obtained in three steps, with the key step being the Suzuki–Miyaura coupling of appropriately functionalized precursors 91 and 92 using Romo and co-worker’s protocol [52]. Reaction of 94 under PPTS acidic conditions initiated

• drastically the radical stability, nucleophilicity, and selectivity of 139 [73]. Furnishing of the common scaffold 130 can be carried out via an attack of intermediates of this type (e.g., 139) on Michael acceptors. Tosyl group deprotection of 130, followed by selenium anhydride oxidation and catalytic

Inline purification in continuous flow synthesis – opportunities and challenges

• Jorge García-Lacuna and
• Marcus Baumann

Beilstein J. Org. Chem. 2022, 18, 1720–1740, doi:10.3762/bjoc.18.182

• flexibility at low cost or exploit standardized flow reactor modules readily available from various vendors. The growing popularity of flow chemistry over the last two decades has led to many developments to streamline important chemical reactions, overcome limitations due to highly unstable intermediates

• -based inline extractions as the final purification step are rare, many applications exploit this approach as part of telescoped flow syntheses. This clearly shows the value of this approach for purifying reaction intermediates to remove spent reagents and unreacted reactants or remaining catalysts prior

• , which also improves safety issues as it traps toxic and explosive reactive intermediates (Scheme 7) [76]. Additional studies include a 3-step reaction to form triazoles in good yields [77], and the synthesis of the bisoxazole natural product siphonazole A using immobilized species [78]. The use of real

Total synthesis of grayanane natural products

• Nicolas Fay,
• Rémi Blieck,
• Cyrille Kouklovsky and
• Aurélien de la Torre

Beilstein J. Org. Chem. 2022, 18, 1707–1719, doi:10.3762/bjoc.18.181

• intermediates 54 and 60. Other synthetic efforts In 2011, Williams and co-workers reported an efficient synthetic route detailing the central core construction of pierisformaside C, which is the first grayanane isolated displaying three central double bonds (Scheme 10) [38]. The team’s objective was to develop

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• classified according to the catalytically active species or key intermediates: N-oxyl radicals, oxoammonium cations, amine cation radicals, thiyl radicals, quinones, dioxiranes and oxaziridines, hypervalent iodine compounds, etc. However, some examples of organocatalyzed oxidative processes, in which an

• play an important role in redox-neutral asymmetric organocatalysis by forming nucleophilic enamine intermediates or electrophilic iminium cations. The same principles are used in oxidative transformations, where an amine can play the role of chirality source and the activator of substrate for oxidation

• [62] has found numerous applications in oxidative transformations, especially in the CH-functionalization of aldehydes (Scheme 3). It is believed that NHCs reversibly form enaminols (Breslow intermediates, Scheme 3) from aldehydes [63]. In this transformation an electrophilic aldehyde carbon turns to

Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• and decoration of a NP scaffold. In comparison to biosynthetic assembly lines, intermediates are not permanently covalently bound to carrier proteins in discrete, multi-enzymatic assemblies. In both biosynthetic principles, the NP backbone is first assembled by core enzymes and then further modified

• minimally harbors three core domains, responsible for the activation and loading, tethering, and condensation of building blocks and intermediates. The biosynthesis is directional and starts at the N-terminal module with the activation and loading of the first building block onto the assembly line (Figure

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• common imine intermediate (7) underwent two different intramolecular aza-Prins reactions in the presence of formic acid to give the ethyl ester of (−)-1 and the lactone of (−)-2 in 64% yield and 8% yield, respectively. Subsequent hydrolysis of these intermediates under basic conditions afforded

• B ((+)-2). Synthesis of (−)-7-amino-7,8-dihydrobisabolene (4) and its conversion to cyclization precursor 7. Synthesis of the halichonic acids via a key intramolecular aza-Prins cyclization. Proposed intermediates for the intramolecular aza-Prins reaction leading to the formation of ethyl ester 8

A new route for the synthesis of 1-deazaguanine and 1-deazahypoxanthine

• Raphael Bereiter,
• Marco Oberlechner and
• Ronald Micura

Beilstein J. Org. Chem. 2022, 18, 1617–1624, doi:10.3762/bjoc.18.172

• reports found in the literature suffer from the requirement of hazardous intermediates and harsh reaction conditions. Here, we report a new six-step synthesis for c1G base, starting from 6-iodo-1-deazapurine. The key transformations are copper catalyzed C–O-bond formation followed by site-specific

• intermediates. Here, we present a new tactic for the syntheses of 1-deazaguanine and 1-deazahypoxanthine stimulated by a recently published route of our research group for the corresponding nucleosides [16][17], employing the same key reaction, namely the copper-catalyzed coupling of an aryl iodide with benzyl

• through different formations of the 1-deazapurine heterocycle. The syntheses of the diethyl 2,6-pyridinedicarbamate precursors via Curtius rearrangement, however, involved explosive chelidamyl diazide intermediates 3 (Scheme 1) [18][19]. Markees and Kidder used an ethyl protection for the O6 and described