Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• correspond, for instance, to biosynthesized intermediates (e.g., 1-O-alkyl-glycerol-3-phosphate [4], lyso-PAF [5]) or neutral ether lipids (e.g., diacyl ether glycerol [6]). Ether glycerolipids are present in mammalian but also in anaerobic bacteria [7], archea (with an inverted stereochemistry at the sn-2

• of the secondary alcohol produced 2.3. The primary alcohol was deprotected in acidic conditions to produce 2.4. The installation of the phosphocholine polar head group was achieved in two steps starting with the reaction of 2.4 with bromoethyl dichlorophosphate (2.5) to produce the phosphate

• oxidation with Br2 and hydrolysis, the bromoethyl phosphate 5.4. Finally, the quaternarization with trimethylamine produced 5.5 and the acetylation produced 5.6 PAF. The intermediate compounds like 6.2 (1-O-alkylglycerol) or the protected secondary alcohol 6.6, either as enantiopure or racemic forms, are

Enabling artificial photosynthesis systems with molecular recycling: A review of photo- and electrochemical methods for regenerating organic sacrificial electron donors

• Grace A. Lowe

Beilstein J. Org. Chem. 2023, 19, 1198–1215, doi:10.3762/bjoc.19.88

• tris buffer rather than phosphate [44]. Instead of using the regenerated NADH in a photocatalytic system, this team actually used an enzyme to consume the regenerated NADH and check its viability. Robert and co-workers recycled the NADH analogue 1,4-BNAH using different photosensitizers and cobalt

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

CO₂ complexation with cyclodextrins

• Cecilie Høgfeldt Jessen,
• Jesper Bendix,
• Theis Brock Nannestad,
• Heloisa Bordallo,
• Martin Jæger Pedersen,
• Christian Marcus Pedersen and
• Mikael Bols

Beilstein J. Org. Chem. 2023, 19, 1021–1027, doi:10.3762/bjoc.19.78

• coverage of the bottom. The analysis shown in Figure 3 was started at 28 °C, and was finished at a temperature of 150 °C with a heating rate of 5 °C/min. Determination of dissociation constants between 7 and CD’s. Samples were prepared that consisted of citrate-phosphate buffer (pH 3, 50 mM), 7 (40 μM) and

• association constants between CD’s and CO2. Samples were prepared that consisted of citrate-phosphate buffer (pH 3, 50 mM), 7 (40 μM) and a fixed concentration of cyclodextrin ([CD]o; 1–4 mM) and put into the pressure cell. The spectrum was recorded at 0, 2, 4 , 6 and/or 8 bar CO2 pressure over the liquid

• pressure autoclave. [CD]tot is the starting concentration of cyclodextrin. [CD·CO2]/[CD]tot is the calculated ratio of bound CO2 in solution using a Kg of 0.18 bar−1. Kd for binding of 7 and Ka for binding CO2 for cyclodextrin derivatives in citrate-phosphate buffer at pH 3. Crystal data and structure

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• dehydration to generate isoxazolium cation 80 paired with a phosphate anion. This chiral phosphate is engaged in H-bonding with the free NH of the heteroarene ring to ease the stereoselective 1,2-addition to in situ generate the cationic heterocyclic scaffold 81. The reaction proceeded faster with pyrroles

• Brønsted acid to generate (N-acyl)(propargyl)imine 90 as intermediate which added to the deprotonated phosphoric acid to form phosphate ester 91 as the next intermediate through an equilibrium process. Then, 1,2-addition by the C3 position of the heteroarene ring to the acylimine intermediate afforded the

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• according to experimental literature with slight modification [20]. α-Glucosidase (0.05 U/mL) and substrate, p-nitrophenyl-α-ᴅ-glucopyronoside (p-NPG) (1 mM) were dissolved in 0.1 M sodium phosphate buffer (pH 6.9). Fifty μL of sample (1 mg/mL in 10% DMSO) and 50 μL of α-glucosidase were preincubated at 37

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• response concerning the excimer band was obtained independently on polynucleotide’s structure and/or base composition. Fluorescence quenching upon binding was similar to the previously published bispyrene–guanidiniocarbonyl compound, which was found to bind along the phosphate backbone of most of examined

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• or by photolysis of pyrazolines bearing difluoromethylphosphonate moieties (Scheme 1C) [35][36][37][38]. Notably, among the various CF2-containing functionalities, difluoromethylphosphonates represent a distinct class of compounds whose potential as nonhydrolyzable phosphate mimics is unquestionable

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• for catalytic ester reduction with H2 [48], led to lower catalyst activity. Possible coordination of residual phosphate to the guanidine moiety was excluded as analysis by 31P NMR experiments. The copper(I)-catalyzed 1,2-reduction of functionalized ester 10 was also successfully achieved using the

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• to improve the water solubility of combretastatin D-2 (2) by converting it into a series of phosphate salts and other prodrugs. Thus, phosphorylation of combretastatin D-2 (2) using dibenzyl phosphite gave derivative 183. Further cleavage of the benzyl groups using TMSBr followed by the reaction of

• the obtained phosphoric acid derivative with a series of bases led to the formation of different phosphate salts 184–187 (Scheme 35) [55]. The authors observed that the prodrug salts had substantially improved solubility in water, an important feature for transport to metastatic cancer (Table 3) [75

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• -triazol-4-yl)methyl]amine, MW, 70 °C (iii) LiOH, water, room temperature, 3 h (iv) phosphate buffer pH 7, [Re(CO)3Br3][NEt4]2, 65 °C, 2 h (v) [99mTc(CO)3(H2O)3]+, pH 7.4, 90 °C, 30 min. Synthesis of meso-triazole-bridged porphyrin-quinolone conjugates 70a–e. Synthesis of meso-triazole-linked porphyrin

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• achieved. When AgOTf was replaced with silver (R)-BINOL phosphate, the asymmetric allylation proceeded in a moderate yield (60%) and enantioselectivity (40% ee). The structure of the ‘GaIOTf’ species was explored in more detail by Slattery, and a monovalent [GaI(18-crown-6)OTf] complex was isolated and

Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

• Robert N. Goldberg,
• Robert T. Giessmann,
• Peter J. Halling,
• Carsten Kettner and
• Hans V. Westerhoff

Beilstein J. Org. Chem. 2023, 19, 303–316, doi:10.3762/bjoc.19.26

• biochemical reaction and the many chemical reactions that accompany it is the hydrolysis reaction of ATP (adenosine 5’-triphosphate) to {ADP (adenosine 5’-diphosphate) + phosphate}: The apparent reaction quotient for this reaction is And the apparent equilibrium constant is Here, (aq) denotes that the

• reaction is taking place in aqueous media and c denotes the respective concentrations (units of mol∙dm−3) of total amounts of ATP, ADP, and phosphate. Note that Q′ and K′ have the same form but they differ critically in that a measured value of K′ refers to Equation 1 having been established to be at

• be written for total ADP and total phosphate. The word “total” is sometimes used to specify total concentrations and, while useful, it seems cumbersome and unnecessary if the context is clear. A substantial number of chemical reference reactions can be selected for the biochemical Equation 1 – a few

An accelerated Rauhut–Currier dimerization enabled the synthesis of (±)-incarvilleatone and anticancer studies

• Tharun K. Kotammagari,
• Sweta Misra,
• Sayantan Paul,
• Sunita Kunte,
• Rajesh G. Gonnade,
• Manas K. Santra and
• Asish K. Bhattacharya

Beilstein J. Org. Chem. 2023, 19, 204–211, doi:10.3762/bjoc.19.19

• a growth suppression. Colorimetric MTT assays are widely used to examine a growth suppression. In these assays, viable cells reduce MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) to its insoluble formazan by oxidoreductase enzymes in a nicotinamide adenine dinucleotide phosphate

Total synthesis of insect sex pheromones: recent improvements based on iron-mediated cross-coupling chemistry

• Eric Gayon,
• Guillaume Lefèvre,
• Olivier Guerret,
• Adrien Tintar and
• Pablo Chourreu

Beilstein J. Org. Chem. 2023, 19, 158–166, doi:10.3762/bjoc.19.15

• , the presence of NMP is actually detrimental. Indeed, for the cross coupling reaction of octylmagnesium chloride with 1-butadienyl phosphate in THF at −20°C in the presence of 1% Fe(acac)3 and 9 equivalents of NMP, the resulting 1,3-dodecadiene cross-coupling product was only obtained with a 54% yield

• and NHCs was also described by Duong for the aryl–aryl cross coupling [29]. Alkoxide salts appear as good alternatives to NMP or phosphate-based additives, since several classic alcohol sources display low toxicities and can also come from renewable resources [30]. In this context, Cahiez and Lefèvre

• nucleophilic partners and as a magnesium alkoxide additive source, enabling the development of iron-mediated cross-coupling procedures with alkenyl or dienyl halides, requiring neither heavy alkyl phosphate leaving groups nor toxic solvents such as NMP. Moreover, those procedures can be carried out at large

Preparation of β-cyclodextrin/polysaccharide foams using saponin

• Max Petitjean and
• José Ramón Isasi

Beilstein J. Org. Chem. 2023, 19, 78–88, doi:10.3762/bjoc.19.7

• , though their macroporosities are remarkably different. Experimental Materials β-cyclodextrin (Wacker, 12.5% H2O), xanthan gum (Sigma-Aldrich), locust bean gum (Sigma-Aldrich), chitosan (deacetylation degree of 90%), citric acid (Panreac AppliChem) and dibasic sodium phosphate (Na2HPO4 ≥ 98%), soapbark

• , plus 0.5 g of Quillaja saponaria saponin. After that, sodium phosphate dibasic (Na2HPO4, 0.28 g) is added to catalyse the reaction (see Supporting Information File 1, Table S1). Two main types of materials are prepared from these stock solutions. The first one (45spLiq*) is directly lyophilized until a

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• protected tryptamine starting materials. The utilization of a chiral phosphate base is essential for the formation of a hydrogen bond between phosphate and tryptamines, allowing the decrease of the oxidation potential. This concept was used for the synthesis of pyrroloindoline natural products (Scheme 17

• ). Thus, upon irradiation, iridium polypyridyl photocatalyst allowed the oxidation of the phosphate complex 207 to radical cation 206, which can be readily trapped by TEMPO, and hence stabilizing the imine and allowing cyclization with the pendant amine to form the pyrroloindoline core 210 in 81% yield

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• hydrolysis of compounds 8 and 9 to form the corresponding amino acids. Thus, treating bicycle 8 with aqueous lithium hydroxide resulted in hydrolysis of the ethyl ester, and subsequent neutralization with pH 7 phosphate buffer afforded halichonic acid ((−)-1) in 88% yield after purification by column

New triazole-substituted triterpene derivatives exhibiting anti-RSV activity: synthesis, biological evaluation, and molecular modeling

• Elenilson F. da Silva,
• Krist Helen Antunes Fernandes,
• Denise Diedrich,
• Jessica Gotardi,
• Marcia Silvana Freire Franco,
• Carlos Henrique Tomich de Paula da Silva,
• Ana Paula Duarte de Souza and
• Simone Cristina Baggio Gnoatto

Beilstein J. Org. Chem. 2022, 18, 1524–1531, doi:10.3762/bjoc.18.161

• -1,2,3-triazole (at C-28 position) of compound 8 mimicked the phosphate group and triazole ring of crystallographic ligands, respectively. In addition, the triterpene skeleton of compound 8 was located at the same region occupied by the aromatic rings of both IMP and inhibitor MAD1 ligands (Figure 3

Preparation of an advanced intermediate for the synthesis of leustroducsins and phoslactomycins by heterocycloaddition

• Anaïs Rousseau,
• Guillaume Vincent and
• Cyrille Kouklovsky

Beilstein J. Org. Chem. 2022, 18, 1385–1395, doi:10.3762/bjoc.18.143

• on the synthesis and the coupling of three main fragments. The central fragment was synthesized via a regio-and stereoselective nitroso Diels–Alder reaction with an enol phosphate, followed by reductive cleavage of the phosphate to the ketone 11b. Coupling studies of this fragment with the lactone

• studies for the conversion of enol phosphate to the corresponding ketone were accomplished using an unprotected primary alcohol. However, it appeared that hydroxy group protection was necessary: control experiments made on the racemic cycloadduct 8 showed that basic hydrolysis of the enol phosphate led to

• we wondered whether it was possible to perform the whole synthetic sequence with this protecting group. Accordingly, the enol phosphate 13 was synthesized in five steps (26% overall yield) from 1,4-butanediol (Scheme 5). Since cycloaddition with the Wightman reagent 6 releases hydrogen chloride in

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• , starting from fructose 6-phosphate and its synthesis ultimately arrives at the limiting step in alginate precursor biosynthesis, the action of GDP-mannose dehydrogenase (GMD), which oxidises GDP-mannose 1 to 5 (Figure 1a). GMD oxidation is suggested to have four discrete steps, first oxidising C6 to an

• shown to be a micromolar inhibitor of GMD (IC50 = 112 μM). Access to these chemical tools was established using a chemoenzymatic approach, whereby bespoke structural modifications were made to the mannose component, delivering an appropriate glycosyl 1-phosphate, followed by pyrophosphorylative

• , syntheses of C6-modified mannose 1-phosphates 13 and 17 were developed (Scheme 1). The synthesis of 6-amino-6-deoxymannose 1-phosphate 13 started from protected thioglycoside 10 [6]. A two-step modification using Appel halogenation followed by nucleophilic substitution with azide furnished 11. Conversion of

On drug discovery against infectious diseases and academic medicinal chemistry contributions

• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 1355–1378, doi:10.3762/bjoc.18.141

Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies

• Attila Palágyi,
• Jindřich Jindřich,
• Juraj Dian and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2022, 18, 1346–1354, doi:10.3762/bjoc.18.140

• phosphate buffer solutions of pH 1.08, 2.00, 3.00, 4.00, 5.00, 6.00, 7.00, 8.00, 9.00, 10.00 11.00, 12.00, and 12.80 were prepared (see Experimental section) using deuterium oxide instead of water to facilitate NMR spectroscopy experiments. Because of the low solubility of the pro-fragrance in water, it had

• heptanylimino-β-CD is more sustained (Figure 5B). Similar behavior at various pH conditions could be observed in the case of the release of benzaldehyde (2d) from the phosphate buffer (Figure 6A) and benzylimino-β-CD (3d, Figure 6B) and 5-methylfurfural (2j) from the phosphate buffer (Figure 7A) and 5

• -methylfurfurylimino-β-CD (3j, Figure 7B). Figures 5–7 show that the aldehyde release from the β-CD imino derivatives was slower than the release from the corresponding aldehyde aqueous phosphate buffers. This observation is consistent with the role of the physicochemical barrier that slows down the release of

Make or break: the thermodynamic equilibrium of polyphosphate kinase-catalysed reactions

• Michael Keppler,
• Sandra Moser,
• Henning J. Jessen,
• Christoph Held and
• Jennifer N. Andexer

Beilstein J. Org. Chem. 2022, 18, 1278–1288, doi:10.3762/bjoc.18.134

• of the enzymes and their thermodynamic reaction course is of need, especially in comparison to other kinases. Here, we tested four PPKs from different organisms under the same conditions without any coupling reactions. In comparison to other kinases using phosphate donors with comparably higher

• phosphate transfer potentials that are characterised by reaction yields close to full conversion, the PPK-catalysed reaction reaches an equilibrium in which about 30% ADP is left. These results were obtained for PPK1 and PPK2 enzymes, and are supported by theoretical data on the basic reaction. At high

• ; Introduction Polyphosphate (polyP, Figure 1) is a linear polymer of up to thousands of phosphate residues connected by phosphate anhydride bonds. It serves as a phosphate storage molecule and plays a crucial role in biofilm formation and stress responses of cells [1]. So far polyP has been detected in every

Mechanochemical bottom-up synthesis of phosphorus-linked, heptazine-based carbon nitrides using sodium phosphide

• Blaine G. Fiss,
• Georgia Douglas,
• Michael Ferguson,
• Jorge Becerra,
• Jesus Valdez,
• Trong-On Do,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2022, 18, 1203–1209, doi:10.3762/bjoc.18.125

• -based materials showed similar resonances to previous work by our group on phosphorus-linked triazine networks [38]. The 31P MAS NMR of g-h-PCN showed a broad resonance centered around −8.9 ppm, with a sharp residual phosphate resonance at 0.9 ppm (Figure 3a). NMR analysis of similar materials, by our

• group as well as others, suggest that the broad resonance corresponds to a largely amorphous phase with predominately phosphate and phosphite-like environments, with the broad resonance at −8.9 ppm possibly corresponding to hydrated sodium phosphate byproducts [43][44]. The NMR spectrum of the g-h