Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors

• Jens Frackenpohl,
• David M. Barber,
• Guido Bojack,
• Birgit Bollenbach-Wahl,
• Ralf Braun,
• Rahel Getachew,
• Sabine Hohmann,
• Kwang-Yoon Ko,
• Karoline Kurowski,
• Bernd Laber,
• Rebecca L. Mattison,
• Thomas Müller,
• Anna M. Reingruber,
• Dirk Schmutzler and
• Andrea Svejda

Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46

• 11b as thiol–thione tautomer consisting of 6-bromo-5-(2-fluorophenyl)[1,3]thiazolo[4,5-b]pyridine-2-thiol and 6-bromo-5-(2-fluorophenyl)[1,3]thiazolo[4,5-b]pyridine-2(3H)thione (17.20 g, 97%). 1H NMR (400 MHz, CDCl3, δ) 9.96 (br s, 1H), 8.01 (s, 1H), 7.50–7.44 (m, 1H), 7.41–7.38 (m, 1H), 7.29–7.25 (m

• , 1H), 7.19–7.15 (m, 1H). The thiol–thione tautomer 11b (14.55 g, 42.64 mmol, 1.0 equiv) was dissolved in acetic acid (200 mL), and iron powder (35.71 g, 639.61 mmol, 15 equiv) was carefully added in portions. The resulting reaction mixture was stirred at 100 °C for 10 h. After full conversion

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• ); ref codes IZICEA [47], XOPZEK and XOPZIO [48]) are known. Interestingly, in contrast to the previously described acyclic structures no OH···O(H) hydrogen bonds are present in structure 5e – the molecules are linked by OH···O(NO2) interactions. Discussion Keto–enol tautomer studies have shown that DBM

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• –H proton. Therefore, three tautomeric forms are possible for 5 (Scheme 4), one of which, the 7H-tautomer 7b, inevitably adopts a bipolar or biradical structure. According to the data from the DFT calculations performed at the B3LYP/6-311++G(d,p) approximation (Figure S6, Supporting Information File

•  1), the energetically preferred tautomer is the 14H-form 7a. The least stable 7H-isomer 7b conforms to a minimum on the corresponding potential energy surface. However, the stable wave function of 7b corresponds to an electronic state with a broken symmetry [20], indicating the presence of two

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• -phenylenediamine (1a) with 1,2-dibromobenzene (2) in the presence of 5 mol % of PdCl2(CH3CN)2 and 5 mol % of t-BuXPhos, with Et3N (2.5 equiv) and Mo(CO)6 in DMF at 150 °C, surprisingly this afforded the 5H-dibenzo[b,e][1,4]diazepin-11-ol (5), the tautomer of DBDAP (4a) in 53% (Scheme 2). We attempted to convert

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• helpful when dealing with sensitive dienes. A nice illustration of this is afforded by De Lucchi’s simple synthesis of barrelene (33) from oxepin (29, Scheme 8b) [52]. Oxepin’s equally unstable valence tautomer 30 (benzene oxide) is quite reactive as a diene in Diels–Alder reactions, and can react with 7

A one-pot electrochemical synthesis of 2-aminothiazoles from active methylene ketones and thioureas mediated by NH₄I

• Shang-Feng Yang,
• Pei Li,
• Zi-Lin Fang,
• Sen Liang,
• Hong-Yu Tian,
• Bao-Guo Sun,
• Kun Xu and
• Cheng-Chu Zeng

Beilstein J. Org. Chem. 2022, 18, 1249–1255, doi:10.3762/bjoc.18.130

• produce α-iodo ketone with the molecular I2 produced by anodic oxidation. Subsequently, the nucleophilic substitution between intermediate 4 and thiourea tautomer gives α-sulfur substituted ketone 5. Intermediate 5 undergoes intramolecular nucleophilic addition to the carbonyl group and followed by

Synthesis and HDAC inhibitory activity of pyrimidine-based hydroxamic acids

• Virginija Jakubkiene,
• Gabrielius Ernis Valiulis,
• Markus Schweipert,
• Asta Zubriene,
• Daumantas Matulis,
• Franz-Josef Meyer-Almes and
• Sigitas Tumkevicius

Beilstein J. Org. Chem. 2022, 18, 837–844, doi:10.3762/bjoc.18.84

• °C (Scheme 2). It is known that there are two possible tautomeric forms of each hydroxamic acid: the keto and enol tautomer. Furthemore, each tautomer can adopt an E or Z conformation (Figure 2) [32][33][34][35][36]. The results of NMR spectra and theoretical calculations showed that hydroxamic acids

Synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via cyclopropene cycloadditions to the stable azomethine ylide derived from Ruhemann's purple

• Alexander S. Filatov,
• Olesya V. Khoroshilova,
• Anna G. Larina,
• Vitali M. Boitsov and
• Alexander V. Stepakov

Beilstein J. Org. Chem. 2022, 18, 769–780, doi:10.3762/bjoc.18.77

• betaine form 1 is the most thermodynamically stable of all tautomers (ΔG = −4.9 kcal/mol). It is also not surprising that the O-protonated form 1', which is both a ketone and an enol, is found to be the most unfavorable (ΔG = 10.8 kcal/mol). In contrast to the O-protonated tautomer 1', both the N

An isoxazole strategy for the synthesis of 4-oxo-1,4-dihydropyridine-3-carboxylates

• Timur O. Zanakhov,
• Ekaterina E. Galenko,
• Mikhail S. Novikov and
• Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2022, 18, 738–745, doi:10.3762/bjoc.18.74

• -3-carboxylates. Synthesis of Isoxazoles 11–13. Synthesis of isoxazoles 1. Synthesis of pyridones 2. Transformations of pyridones 2. Gibbs free energies of the pyridole tautomer relatively to the pyridone tautomer of compounds 2 (in kcal/mol, 298 K). Supporting Information Supporting Information

Synthesis of 3,4,5-trisubstituted isoxazoles in water via a [3 + 2]-cycloaddition of nitrile oxides and 1,3-diketones, β-ketoesters, or β-ketoamides

• Md Imran Hossain,
• Md Imdadul H. Khan,
• Seong Jong Kim and
• Hoang V. Le

Beilstein J. Org. Chem. 2022, 18, 446–458, doi:10.3762/bjoc.18.47

• enol tautomer of the 1,3-diketone was predominant in CDCl3, while the keto tautomer was predominant in methanol-d4, which is a more polar solvent than CDCl3 (Figure 7). Our observations thus reinforce Meyer’s rule [34][35], which states that the keto tautomer is favored as the solvent polarity

• thermodynamical product. The solvent polarity also affects the keto–enol equilibrium of the intermediate II-D. In polar solvents, the keto tautomer is predominant as an electrophilic group for the intramolecular cyclization, while in nonpolar solvents, the enol tautomer could not accept a nucleophilic attack for

• a further cycloaddition. In addition, the conjugation between the new C=N bond and the enol double bond promotes the enol tautomer formation. This may also explain why the trifluoromethylated 1,3-diketones produced the trifluoromethyl-substituted isoxazoles with lower yields than the methyl

1,2-Naphthoquinone-4-sulfonic acid salts in organic synthesis

• Ruan Carlos B. Ribeiro,
• Patricia G. Ferreira,
• Amanda de A. Borges,
• Luana da S. M. Forezi,
• Fernando de Carvalho da Silva and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 53–69, doi:10.3762/bjoc.18.5

• with reddish hues. The reaction with aniline forms the substitution product of the sulfonic group with a phenylamino group in a 90% yield. In his study, he proposed that the structure of the nucleophilic addition product was tautomer 19 (Scheme 1B). In search of a reagent that could form stable adducts

• -d5, and NaOD solutions in D2O. In neutral solvents, the most stable tautomer is 4-arylamino-1,2-naphthoquinone A, while in weakly basic solvents, or ethanolic sulfuric acid, B is the most stable tautomer (Scheme 3C). Reactions employing equimolecular amounts of β-NQS and primary arylamines are

• naphthoquinones A prevail in all pH regions except for extreme acidity, where there is a shift to the form of 2-hydroxy-1,4-naphthoquinone-4-arylimines [73][74]. However, in weakly acidic or alkaline solutions, A is the most stable tautomer (Scheme 3C) [75]. Fragoso and co-workers [76] studied the tautomeric

Photophysical, photostability, and ROS generation properties of new trifluoromethylated quinoline-phenol Schiff bases

• Inaiá O. Rocha,
• Yuri G. Kappenberg,
• Wilian C. Rosa,
• Clarissa P. Frizzo,
• Nilo Zanatta,
• Marcos A. P. Martins,
• Isadora Tisoco,
• Bernardo A. Iglesias and
• Helio G. Bonacorso

Beilstein J. Org. Chem. 2021, 17, 2799–2811, doi:10.3762/bjoc.17.191

• , according to Temel and co-workers who studied a similar scaffold, namely, 4-bromo-2-((quinoline-8-yl)methyl)phenol [27], no imine–hemiaminal tautomer peak transition was observed for the Schiff bases 3. In general, there were slightly significant changes in the transitions according to the changes in the

Silica gel and microwave-promoted synthesis of dihydropyrrolizines and tetrahydroindolizines from enaminones

• Robin Klintworth,
• Garreth L. Morgans,
• Stefania M. Scalzullo,
• Charles B. de Koning,
• Willem A. L. van Otterlo and
• Joseph P. Michael

Beilstein J. Org. Chem. 2021, 17, 2543–2552, doi:10.3762/bjoc.17.170

• cyclization to the expected pyrrolizinone 13a or tautomer 13a' did not take place (Table 1, entry 1). More vigorous conditions were therefore investigated. Heating 15a in acetic acid (150 W) for 10 minutes at 140 °C produced a new product in 72% yield (Table 1, entry 2). However, the isolated product was not

Nomimicins B–D, new tetronate-class polyketides from a marine-derived actinomycete of the genus Actinomadura

• Zhiwei Zhang,
• Tao Zhou,
• Taehui Yang,
• Keisuke Fukaya,
• Enjuro Harunari,
• Shun Saito,
• Katsuhisa Yamada,
• Chiaki Imada,
• Daisuke Urabe and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2194–2202, doi:10.3762/bjoc.17.141

• canonical structures of 4 (4a–d in Figure 5). The calculated ECD spectra of 4a–d and the one of 4, which includes all contributions from each tautomer according to the energy distribution, are shown in Figure 5 and Figure 4, respectively. The experimental ECD spectrum of 4, with positive and negative Cotton

• tautomer are included in Supporting Information File 1. Biological assays Antimicrobial activity and cytotoxicity were evaluated according to the procedures previously described [29]. Structures of nomimicins A–D (4 and 1–3). COSY and key HMBC correlations for 1. Relative configuration of 1 determined by

Regioselective N-alkylation of the 1H-indazole scaffold; ring substituent and N-alkylating reagent effects on regioisomeric distribution

• Ryan M. Alam and
• John J. Keating

Beilstein J. Org. Chem. 2021, 17, 1939–1951, doi:10.3762/bjoc.17.127

• achieve regioselective indazole N-alkylation have exploited the noted difference in reactivity between the N-1 and N-2 atom of the indazole scaffold [15], as the 1H-indazole tautomer is typically considered to be more thermodynamically stable than the corresponding 2H-tautomer [16]. Using appropriate α

A recent overview on the synthesis of 1,4,5-trisubstituted 1,2,3-triazoles

• Pezhman Shiri,
• Ali Mohammad Amani and
• Thomas Mayer-Gall

Beilstein J. Org. Chem. 2021, 17, 1600–1628, doi:10.3762/bjoc.17.114

• corresponding triazole products in moderate yield (Scheme 8) [42]. The authors proposed a reaction mechanism in which the β-thioenaminone 18 tolerates deprotonation to afford anionic intermediate 21 through the tautomer 20 in the presence of a base. In the next step, the nucleophilic addition of 21 to the azide

Synthetic accesses to biguanide compounds

• Oleksandr Grytsai,
• Cyril Ronco and
• Rachid Benhida

Beilstein J. Org. Chem. 2021, 17, 1001–1040, doi:10.3762/bjoc.17.82

• sites, and eight possible tautomeric forms. The major tautomer of biguanide has long been debated and different representations have been depicted in textbooks and research articles. Historically, the biguanide structure was presented similarly to diketones (Figure 1, 1a), which led to misunderstandings

• represented as the major tautomer 1b with the conjugated system –C=N–C=N– and the numbering of the different atoms will be established as depicted in Figure 1. Biguanides are relatively strong bases, with pKa1H ≈ 11.5 (pKa of the conjugate acid of biguanide); however, significantly less basic than guanidine

Synthesis of dibenzosuberenone-based novel polycyclic π-conjugated dihydropyridazines, pyridazines and pyrroles

• Ramazan Koçak and
• Arif Daştan

Beilstein J. Org. Chem. 2021, 17, 719–729, doi:10.3762/bjoc.17.61

• was converted to pyrrole 15a,b. Finally, the phenolic parts of 15a,b were oxidized to p-quinone methides 16a,b with PIFA in excellent yield (89–97%, Scheme 8). For the formation of unexpected compound 13, we propose two different mechanisms. First, following the formation of phenolic tautomer 12A by

Identification of volatiles from six marine Celeribacter strains

• Anuj Kumar Chhalodia,
• Jan Rinkel,
• Dorota Konvalinkova,
• Jörn Petersen and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 420–430, doi:10.3762/bjoc.17.38

• from the roseobacter group is the production of the sulfur-containing antibiotic tropodithietic acid (TDA) in Phaeobacter piscinae DSM 103509T [28], a compound that is in equilibrium with its tautomer thiotropocin [29] that was first described from Pseudomonas sp. CB-104 [30]. Its biosynthesis depends

1,2,3-Triazoles as leaving groups: S_NAr reactions of 2,6-bistriazolylpurines with O- and C-nucleophiles

• Dace Cīrule,
• Irina Novosjolova,
• Ērika Bizdēna and
• Māris Turks

Beilstein J. Org. Chem. 2021, 17, 410–419, doi:10.3762/bjoc.17.37

• –purine conjugate 5c were 40.9 and 61.7 ppm, respectively. This range does not fully correspond to the theoretical values 80–140 ppm, expected for the Csp2 atom of the N–H form B. In compound 5c the N–H form 5cB is possibly the major tautomer in CDCl3 solution as it is stabilized via an intramolecular

• experiments did not determine preference for tautomer A or B of compound 5a, it was analysed in its deprotonated form C (CD3OD/D2O/NaOD). Interestingly, that the 13C NMR spectrum of 5a in basic medium revealed a similar chemical shift for carbon C(2’’) (40.9 ppm) as in neutral CD3OD. The 13C NMR analysis of

• purine–dimedone conjugate 5b revealed two downfield shifts of 194.1 and 185.3 ppm. It showed that the structure is not symmetrical and corresponds to either tautomer structure B or C in CDCl3 solution with a theoretical preference for enol form C. Finally, the structure of C–H tautomer 5dA was proved by

Synthesis of legonmycins A and B, C(7a)-hydroxylated bacterial pyrrolizidines

• Wilfred J. M. Lewis,
• David M. Shaw and
• Jeremy Robertson

Beilstein J. Org. Chem. 2021, 17, 334–342, doi:10.3762/bjoc.17.31

• , it seems reasonable to envisage that ready equilibration of the pyrrolizixenamide enantiomers (and those of related molecules such as jenamidine A and the prelegonmycins) via the hydroxypyrrole tautomer, and aerial oxidation of this electron-rich intermediate, would offer a non-enzymatic route to the

Selective synthesis of α-organylthio esters and α-organylthio ketones from β-keto esters and sodium S-organyl sulfurothioates under basic conditions

• Jean C. Kazmierczak,
• Roberta Cargnelutti,
• Thiago Barcellos,
• Claudio C. Silveira and
• Ricardo F. Schumacher

Beilstein J. Org. Chem. 2021, 17, 234–244, doi:10.3762/bjoc.17.24

• between the keto and the enol tautomer is given based on the 1H NMR analysis. These results are consistent with the report by Tan and collaborators [55] and are evidence to help understand the reaction mechanism. Although detailed mechanisms for these reactions remain to be elucidated, the literature has

• place in β-keto esters, which is followed by CO2 displacement under heating [61][62][63][64]. We assume that in our case, when only 2 equiv of base are used, the keto–enol tautomer intermediates undergo a hydrolysis–decarboxylation process preferentially to a retro-Claisen reaction. This process forms

Recent developments in enantioselective photocatalysis

• Callum Prentice,
• James Morrisson,
• Andrew D. Smith and
• Eli Zysman-Colman

Beilstein J. Org. Chem. 2020, 16, 2363–2441, doi:10.3762/bjoc.16.197

• tautomer 147, and the CPA-catalysed Povarov reaction between them gives the enantioenriched THQ 144 in good yields and enantioselectivities (4 examples, up to 97:3 er). This reactivity has been extended to enamides 148, with the imine generated from the α-amino acid 149 now reacting with 148 in a CPA

• -catalysed Povarov reaction rather than with its own tautomer (Scheme 21a) [70]. Zhang and You developed a catalytic dearomatisation reaction of indoles 150 using similar chemistry, where the generated imine 151 now reacts intramolecularly with a pendant nucleophile and is further oxidised to a carbocation

Regiodivergent synthesis of functionalized pyrimidines and imidazoles through phenacyl azides in deep eutectic solvents

• Paola Vitale,
• Luciana Cicco,
• Ilaria Cellamare,
• Filippo M. Perna,
• Antonio Salomone and
• Vito Capriati

Beilstein J. Org. Chem. 2020, 16, 1915–1923, doi:10.3762/bjoc.16.158

• putative azide tautomer 4, the latter deriving from the corresponding α-phenacyl azide precursor 2 via an acid-catalyzed enolization process [34]. The pyrolysis of α-azido ketones in conventional VOCs (trichlorobenzene) is known to take place under harsh conditions, which are based on heating the mixture

• after column chromatography on silica gel; only one tautomer has been depicted for simplicity; imidazoles 3c/3c', 3i/3i', 3j, 3k/3k' were found to precipitate as they formed, and were isolated by filtration/centrifugation and washing with a few drops of AcOEt or Et2O; synthesis of imidazoles 3k/3k': 10

Rearrangement of o-(pivaloylaminomethyl)benzaldehydes: an experimental and computational study

• Csilla Hargitai,
• Györgyi Koványi-Lax,
• Tamás Nagy,
• Péter Ábrányi-Balogh,
• András Dancsó,
• Gábor Tóth,
• Judit Halász,
• Angéla Pandur,
• Gyula Simig and
• Balázs Volk

Beilstein J. Org. Chem. 2020, 16, 1636–1648, doi:10.3762/bjoc.16.136

• , gave isomeric aldehyde 2a (48%) and the dimer-like racemic product 3a (11%). Both transformations were rationalized by the intermediacy of the isoindole 4a (Scheme 1). The formation of aldehyde 2a can be explained by a protonation of the ring tautomer 1a, followed by an acid-catalyzed water elimination