Nucleophilic functionalization of thianthrenium salts under basic conditions

• Xinting Fan,
• Duo Zhang,
• Xiangchuan Xiu,
• Bin Xu,
• Yu Yuan,
• Feng Chen and
• Pan Gao

Beilstein J. Org. Chem. 2024, 20, 257–263, doi:10.3762/bjoc.20.26

• in 88% yield under the following optimal conditions: S-(alkyl)thianthrenium salt 1a and 4-bromothiophenol (2a) as the model substrates, N,N-diisopropylethylamine (DIPEA) as the base, were added to a vessel in air; after stirring for 16 hours at room temperature, the corresponding product was isolated

• , alkyl-OTf is prone to decomposition and poses challenges for storage at ambient temperature (for details, see Supporting Information File 1). Conclusion In summary, using the presented operational simple and metal-free method, we have synthesized thioethers and amines from bench stable and readily

• using nucleophiles directly, without the need for an external metal catalyst. Synthetic application of thianthrenium salts. Substrate scope. Reaction conditions: alkylthianthrenium salts 1 (0.3 mmol), thiophenols 2 (0.2 mmol), DIPEA (0.4 mmol) in 2.0 mL of MeCN at room temperature for 16 h under air

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• underwent E–Z photoisomerization in benzene upon irradiation with yellow light and returned to E-isomer in darkness at room temperature within about 30 seconds [39]. One year later, Pummerer and Marondel attempted to reproduce this experiment and to detect the Z-isomer of N,N'-dimethylindigo 11a upon

• to the presence of the electron-withdrawing ester groups. Importantly, only the Z-form of 18c was found to be stable enough with a half-life of 2.8 min at room temperature in acetonitrile (77% of Z-isomer in PSS) and 4.1 minutes in toluene (91% of Z-isomer in PSS) after irradiation with red light

• , extending from 0.48 seconds to 22 hours at room temperature due to formation of the long-living intramolecular dimeric species. Photochromic N,N'-diacylindigos After the initial report on the photochromic behavior of N,N'-diacetylindigo (9a) in 1954 [37], Wyman and Zenhäusern continued spectroscopic studies

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• conditions such as transitioning from 0 °C to room temperature and extending the reaction duration from 3 to 24 hours, we did not observe the anticipated enhancements (51% yield, entry 1, Table 1). This trend persisted when we attempted glycosylation between C6-acetylated MurNAc derivative 2b and 1a, where

• observations, we initially noted that at room temperature, the degradation rate of glycosyl donor 1a exceeded the rate of product formation. This led to a complex mixture consisting of the target product 3a, acceptor 2a, and various degraded products of donor 1a. This situation posed challenges, as even

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

• temperature proceeded to afford the desired unsymmetrical β-trifluoromethyl diacyl-β-amino ester 4a in 54% yield (Table 1, entry 1). The loading amount of catalyst CuI plays a crucial role in the formation of the desired product 4a. Increasing the loading amount of CuI, the yield could be raised to 66% when

• 20 mol % of CuI was used as catalyst (Table 1, entries 2 and 3). However, further increasing the amount of the catalyst led to an obvious decrease in the yield of product 4a (Table 1, entries 4 and 5). Variation on the reaction temperature also afforded the corresponding product 4a but failed to

• General procedure for copper-catalyzed multicomponent reaction of β-amino esters Into a flask were added amines 1 (0.4 mmol), acids 3 (0.1 mmol), CuI (20 mol %), and CH3CN (2 mL). Then, the mixture was stirred at room temperature under a nitrogen atmosphere and t-BuONO (0.4 mmol) was added dropwise

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• (1a) as the model substrate, Hantzsch ester (HE-Et) as the hydrogen source, and BINOL-derived chiral phosphoric acids (CPA) as the catalyst (Table 1). With chiral phosphoric acid CPA-1, the transfer hydrogenation reaction proceeded well in PhCF3 at room temperature and the target product 2a was

• enantioselectivity decreased when the reaction temperature was reduced to 0 °C (Table 2, entry 7). With the optimal reaction conditions in hand, the substrate range of 2-alkynyl-3,3-difluoro-3H-indoles 1 for this transfer hydrogenation reaction was investigated (Scheme 2). Fluoro-, chloro-, and bromo-substituted 3,3

• and the reaction mixture was stirred at room temperature for 3 h. After concentrating the mixture, the residue was purified by column chromatography on silica gel using a mixture of petroleum ether/ethyl acetate 30:1 (v/v) as the eluent to afford products 2. The yields were determined by 19F NMR

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• relevant heterocycles in high efficiency [10]. The Chan–Lam coupling is considered a greener alternative to traditional C–N coupling reactions, as it can be carried out under mild reaction conditions (room temperature and short reaction times, etc.), plus it does not require expensive metals like Pd, being

• the reaction time to 1 h. Interestingly, we noticed that in the initial one-pot reactions indicated in Table 1, the yields of the diarylamine 3a were better when Mo(CO)6 was present (compare entry 4, Table 1 to entry 7, Table 2). This might be due to (a) the fact that the temperature used for the

• DMF. The reaction was performed at 130 °C, as we believed that high temperature will promote the cyclization of the sterically hindered intermediate 3a, but no DBDAP was achieved under these conditions (entry 1, Table 3). Next, Pd(OAc)2 was employed under ligand-free conditions, but again the desired

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• outcome. Although polarimetry data clearly suggest, in our opinion, the presence of different supramers in solutions of glycosyl donors 1 and 2 with different concentrations at ambient temperature (28 °C) (Figure 1, Table 1), the situation may be different at much lower temperatures (≤−40 °C), at which

• rotation values were measured with a PU-07 automatic digital polarimeter (Russia) at 28 °C in a jacketed glass cell (10 cm length). Special precautions were made to ensure the stability of the instrument and the temperature within the measuring compartment of the instrument and the cell, which was

• maintained with an accuracy of ±0.2 °C. After the instrument was warmed up for at least 1 h (as experience suggests, after this period the temperature within the instrument remains stable for at least 8–10 h of continuous work) the instrument readings were verified against the quartz standards (α = +21.267

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• in formation of a homogenous solution, but still no conversion to the sulfated product, even when the temperature was raised to 80 °C [28][29]. Switching the sulfating reagent to SO3·Py or performing the reaction at 150 °C in a microwave did not improve the outcome [30][31]. Since there was no

• cell. Samples were prepared at the concentration (g/100 mL) in the solvent indicated. Deprotected glycans were lyophilised using a freeze-dryer Alpha 1-2 LDplus (Christ Ltd): pressure: 0.055 mbar; ice-condenser temperature: −55 °C. 2-[2-(2-Azidoethoxy)ethoxy]ethyl 3-O-acetyl-2-deoxy-4,6-O-di-tert

• molecular sieves (10.2 g) were added and the resulting suspension was stirred at room temperature for 16 hours. NIS (6.66 g, 29.6 mmol) and AgOTf (760 mg, 2.96 mmol) were then added, and the reaction was stirred at room temperature for 40 minutes. The reaction was then quenched with Et3N, filtered through

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• , the amount of alkyl bromide and temperature affected the reaction significantly (Table 1, entries 20 and 21). Finally, control experiments demonstrated that copper promoted the transformation and a base was the indispensable factor for the reaction (Table 1, entries 22–24). Therefore, a facile and

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• + 2] CA–RE reaction is extremely slow when applied to mono-substituted alkynes bearing an DMA group. Conversely, for bis-substituted alkynes, the reaction occurs readily at room temperature, yielding the corresponding TCBD products, as shown in Scheme 2. This reaction required the presence of two

• agent for TCNE. Anthracene-based ynamide 16 offers two potential reactive sites for TCNE, one residing at the anthracene moiety and other at the alkyne moiety, as shown in Scheme 9 [71]. As exemplified by Trolez et al., the introduction of one equivalent of TCNE to 16 at room temperature initiates a [4

• substituents on the alkynes. The remarkable reactivity displayed by angle-strained alkynes makes them highly valuable tools in biorthogonal chemistry [107][108][109]. The reaction between dibenzo-fused cyclooctyne 20 and TCNE was observed to occur at room temperature, quantitatively yielding 22, wherein the

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• room temperature without additives. Mechanistic investigations support a photochemical process initiated by the homolysis of Umemoto's reagent under visible light irradiation. This method provides rapid access to a diverse range of trifluoromethylated dihydropyrido[1,2-a]indolone derivatives in

• room temperature for 12 hours under visible light irradiation (450 nm). After completion, the reaction mixture was concentrated, and the crude product was purified by column chromatography to afford the desired dihydropyrido[1,2-a]indolone product. Representative dihydropyrido[1,2-a]indolone

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• , and gHMBC experiments. The spectra were processed with the MestreNova software. The mass spectra were recorded with a Finnigan LCQ Deca (driving current: 6 kV, collision gas: argon, capillary temperature: 200 °C, support gas: nitrogen) and an Orbitrap mass spectrometer Thermo Fisher Exactive (driving

• current: 3.5 kV, capillary temperature: 300 °C, capillary voltage: 45 V, injection rate: 5 μL/min, scanning range: 150−750 m/z, and resolution: ultra-high) and processed with the software Xcalibur. The CHNS analysis data were determined in-house with a HEKAtech EuroEA combustion analyzer. The melting

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• nanotubular-shaped fullerene inside the peapod. Kinetic analysis with the variable-temperature (VT) SMART-TEM method for the aforementioned C60 dimerization has also been reported by these authors [9]. They concluded that the SWCNT, which accumulates energy by the interaction with the electron beam, activates

• settings) is also predicted to be formed. Free energy difference between the two isomers, estimated in the gas phase, is somewhat reduced when increasing temperature (see Supporting Information File 1, Table S1). Therefore, the molar fraction of (1-Cs)•+@CNT would increase slightly at higher temperatures

• confinement for the reaction to proceed. The barriers for the reversible phase 1 are found to be easily surmountable at ambient temperature for both the forward and the inverse processes, especially for the dimerization of radical cation fullerenes. For the initial steps of irreversible phase 2, up to six C–C

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• substrate and allowed to dry at room temperature. To improve the conductivity and achieve higher resolution SEM imaging, a 20 nm thick layer of Au was sputtered onto the sample surface. For EDS mapping, the samples were not sputtered with Au to avoid interference during the determination of Pt. UV–vis

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• phenolate zwitterions at room temperature. Nine different zwitterions were synthesized and fully characterized. Zwitterions with the poor Michael acceptors methyl methacrylate and methyl crotonate formed, but could not be isolated in pure form. The solid-state structures of two phosphonium phenolate

• toward the desired product 3-(allyloxy)propanenitrile was observed after stirring the reaction mixture for 24 h at room temperature. Analyzing the reaction mixture with 1H NMR spectroscopy revealed the formation of a minor amount of a novel compound characterized by two multiplets centered at 3.31 and

• with allyl alcohol (in both cases using a molar ratio of 1:1.05 and dichloromethane as the solvent). While in the latter case only the starting materials were observed after 24 h at room temperature, the reaction of 1 with acrylonitrile turned yellow during the same time and exclusively yielded the

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• groups. Aromatic micelle (PA-CH3)n was furthermore found to be stable for at least six days at room temperature in the dark (see Figure S37 in Supporting Information File 1). Noncovalent encircling of various nanocarbons in water By employing a simple grinding–sonication protocol, various nanocarbons

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• -carbonitrile (4) in 5% yield when the reaction was carried out at room temperature in 1,4-dioxane in the presence of an equivalent amount of TEA (Table 1, entry 1). This result is in contrast to our previous findings where the reaction of compound 1a with sulfonyl azides led to 5-amino-1,2,3-triazole-4-N

• -sulfonylamidines selectively [17]. The following screening of organic (Table 1, entries 2‒7 and 8) and inorganic (Table 1, entry 10) bases at room temperature revealed that using DBU resulted in the highest yield of triazole 3a. Analysis of experiments with 100 mol %, 120 mol %, and 80 mol % of DBU (Table 1

• temperature. A similar yield of the target product 3a was obtained by the reaction in ethanol in the presence of NaOH at 0 °С (entry 11 in Table 1). The latter conditions can be an alternative for the synthesis of compounds 3. Synthesis of N-heteroaryl amidines 3 We hypothesized that both 3,3

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• iodane. bphenoxazines 3b–e required a higher reaction temperature of 135 °C. Optimization of reaction conditions.a Supporting Information Supporting Information File 22: Experimental part. Funding Funding for NC was provided by DFG project NA955/3-1.

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• with alternative solvents could represent an important innovation for alkyne hydration. In particular, ionic liquids (ILs) could represent a valid alternative to conventional organic solvents. ILs are generally liquid salts at or near room temperature, formed by large unsymmetrical organic cations and

• this way, the hydration product was not obtained. In addition to the different reactivity, due to the presence or not of chlorine in the para position of the phenyl group, the different physical state (liquid for 1m vs solid for 1n) and the possible different solubility in BMIm-BF4 at room temperature

• anolyte and the mixture was kept under stirring at room temperature for 30 min. Then, the neat anolyte was analysed by NMR (19F and 13C). The 19F NMR spectrum showed a new peak at −148.7 ppm and, to our great astonishment, we found only one set of signals in the 13C NMR spectrum (55.0, 42.8, 17.4, 16.0

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• typical deprotection and cleavage conditions using concentrated ammonium hydroxide at elevated temperature. At this stage, the mixture contained the desired full-length sequence 3 and impurities such as failure sequences 4 and small molecules from ODN deprotection (Scheme 1). It is noted that the full

Aldiminium and 1,2,3-triazolium dithiocarboxylate zwitterions derived from cyclic (alkyl)(amino) and mesoionic carbenes

• Nedra Touj,
• François Mazars,
• Guillermo Zaragoza and
• Lionel Delaude

Beilstein J. Org. Chem. 2023, 19, 1947–1956, doi:10.3762/bjoc.19.145

• report described the preparation of a CAAC·CS2 zwitterion. Thus, in 2009 Bertrand et al. obtained the betaine 2 by reacting the free carbene 1 with a slight excess of CS2 in THF at room temperature (Scheme 1) [62]. The starting material that featured a bulky and rigid spirocyclic alkyl group derived from

• required the use of a double amount of base. The suspensions were brought back to room temperature and allowed to settle down to ease the filtration of the inorganic byproducts (KCl or KBF4), along with any unreacted starting materials. Adding an excess of CS2 to the free carbene solutions led to the

• equiv) in THF at 0 °C. The potassium iodide byproduct was filtered off and carbon disulfide (3.3 equiv) was added to the carbene solution leading to an immediate color change. After 30 min at room temperature, the solvent was evaporated under vacuum. The residue was washed with petroleum ether and dried

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• bootstrap error analysis and visually for equilibration and production runs. WHAM (weighted histogram analysis method [43]) was performed using Grossfield’s WHAM program [44] to calculate the potential of mean force (PMF). For bootstrap analysis, 0.001 iteration tolerance, 300 K as temperature, and 1000 as

Construction of diazepine-containing spiroindolines via annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates

• Xing Liu,
• Wenjing Shi,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1923–1932, doi:10.3762/bjoc.19.143

• shortened to 12 h or prolonged to 36 h (Table 1, entries 8 and 9). Also, neither decreasing or increasing the reaction temperature did improve the yield of product 3a which was obtained in 26% yield at 0 °C and 52% yield in refluxing DCM, respectively (Table 1, entries 10 and 11). In the presence of

• temperature for 24 hours in the presence of an excess amount of triethylamine. With the optimized reaction conditions in hands, we next examined the scope of the reaction by employing various functionalized substrates and the results are summarized in Scheme 2. As it can be seen, the expected dihydrospiro

• , α-halogenated p-toluenesulfonylhydrazones 6 were also used in the reaction and the results are summarized in Scheme 4. As it can be seen, the triethylamine-mediated [4 + 3] cycloaddition could be accomplished at room temperature in two hours. These results clearly showed that the α-halogenated p

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• (19) in the presence of activated zinc dust in THF (Scheme 4) [35]. By making minor adjustments to the reaction conditions, such as employing DMF as the solvent and raising the temperature to 100 °C, along with utilizing compound 20 as the starting material, Barton and his team achieved the synthesis

• ]. In their study, they effectively synthesized POA 87 utilizing 2,3-dibromotetracene (85) as substrate at a temperature of 430 K, employing ultra high vacuum conditions on Ag(111). Subsequent scanning tunneling microscopy (STM) analyses unveiled not only the linear POA 87 resulting from surface

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• ) to 2-chloroacrylonitrile (29) was selected (Figure 5) [68]. In the presence of 5 mol % of the best fullerene catalyst 21, conversion into dicyanide 30 reached 72% within 5 days at ambient temperature [67]. While enantioselectivity was negligible, dr 5.3:1 was the best diastereoselectivity among all