Efficient catenane synthesis by cucurbit[6]uril-mediated azide–alkyne cycloaddition

• Antony Wing Hung Ng,
• Chi-Chung Yee,
• Kai Wang and
• Ho Yu Au-Yeung

Beilstein J. Org. Chem. 2018, 14, 1846–1853, doi:10.3762/bjoc.14.158

• interactions are preserved under the MS conditions. Inclusion of the triazole in the CB[6] cavity was evidenced by the upfield shifted triazole resonance from 8.5 ppm to 6.4 ppm when compared with that of free triazole in non-interlocked system [22][24][25]. NOE cross peaks between the triazole and CB[6

Synthesis of spirocyclic scaffolds using hypervalent iodine reagents

• Fateh V. Singh,
• Priyanka B. Kole,
• Saeesh R. Mangaonkar and
• Samata E. Shetgaonkar

Beilstein J. Org. Chem. 2018, 14, 1778–1805, doi:10.3762/bjoc.14.152

• -substituted phenol 126 to tricyclic spiroketals 127a,b in 56% yield using PIDA (15) as electrophilic species in acetonitrile at room temperature (Scheme 47). The mixture of both isomers was separated by flash column chromatography and the stereochemistry of major isomer 127a was assigned on the basis of NOE

Synthesis of diamido-bridged bis-pillar[5]arenes and tris-pillar[5]arenes for construction of unique [1]rotaxanes and bis-[1]rotaxanes

• Ying Han,
• Li-Ming Xu,
• Cui-Yun Nie,
• Shuo Jiang,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2018, 14, 1660–1667, doi:10.3762/bjoc.14.142

• cavity of one molecular pillar[5]arene, while another pillar[5]arene as the bigger stopper. Additionally, 2D NOESY spectra of the compound 5d provided more strong evidence for the formation of [1]rotaxane (Figure 3). The NOE correlations were clearly observed between Ha, Hb, Hc, Hd, and He protons of the

• be seen that the NOE correlations were clearly observed between Ha, Hb, Hc, Hd, Hf, Hg, Hh protons of the bridging diaminohexylene chain and the protons Hi, Hj in the core of pillar[5]arene. Additionally, some correlations exists between protons Ha, He, Hd and Hh and active amino (N–H) group. These

• NOE correlations clearly indicated the two bridged diaminohexylene chain threading into the cavity of the two pillar[5]arenes to form the bis-[1]rotaxane. The similar correlations were also observed in the NOESY spectra of the tris-pillar[5]arene 9b and 9c (see Supporting Information File 1, Figures

Lanyamycin, a macrolide antibiotic from Sorangium cellulosum, strain Soce 481 (Myxobacteria)

• Lucky S. Mulwa,
• Rolf Jansen,
• Dimas F. Praditya,
• Kathrin I. Mohr,
• Patrick W. Okanya,
• Joachim Wink,
• Eike Steinmann and
• Marc Stadler

Beilstein J. Org. Chem. 2018, 14, 1554–1562, doi:10.3762/bjoc.14.132

• their macrolactone ring was assigned based on NOE and vicinal 1H NMR coupling constants and by calculation of a 3D model. Lanyamycin inhibited HCV infection into mammalian liver cells with an IC50 value of 11.8 µM, and exhibited a moderate cytotoxic activity against the mouse fibroblast cell line L929

• , i.e., 0.57 ppm, for C-43*. This allowed to observe a strong NOE between C-43 and 25OH, while the NOE between C-43* and 25*OH was only weak. Similarly, only the aromatic 35*/31* proton signals had an NOE with H-24* while the corresponding correlation was absent in isomer 1. Thus, the high-field shift

• = 9.5 Hz and J14/15 = 8 Hz indicated the trans orientation of their protons in the macrolactone ring with torsion angles of 177° and 170°. Further, the distances between proton pairs showing NOE interactions in the ROESY spectra of 1/2 were analyzed (Table 2). These distances showed a very good relation

An overview of recent advances in duplex DNA recognition by small molecules

• Sayantan Bhaduri,
• Nihar Ranjan and
• Dev P. Arya

Beilstein J. Org. Chem. 2018, 14, 1051–1086, doi:10.3762/bjoc.14.93

• ). This has been attributed to strong self-association (dimerization) in an antiparallel, head-to-tail orientation in aqueous solution during complex formation with duplex DNA oligomers verified via NOE experiments [61]. They further reported several structurally diverse MGBs, derived from distamycin, in

Cross-coupling of dissimilar ketone enolates via enolonium species to afford non-symmetrical 1,4-diketones

• Keshaba N. Parida,
• Gulab K. Pathe,
• Shimon Maksymenko and
• Alex M. Szpilman

Beilstein J. Org. Chem. 2018, 14, 992–997, doi:10.3762/bjoc.14.84

• based on 2D-NOE NMR (Scheme 3). The enolate 21 was then converted into enolonium species 22 and cross-coupled with a second equivalent of 21 to give the two separable diastereoisomers of 23 one meso and one rac in 6:1 diastereoselectivity. This in conjunction with earlier work from our group [34

An efficient and facile access to highly functionalized pyrrole derivatives

• Meng Gao,
• Wenting Zhao,
• Hongyi Zhao,
• Ziyun Lin,
• Dongfeng Zhang and
• Haihong Huang

Beilstein J. Org. Chem. 2018, 14, 884–890, doi:10.3762/bjoc.14.75

• easily attacked by the nucleophilic amine (compared with the carbonyl at the 4-position, shown in Scheme 4) exemplified by the reaction of 12d with ethylamine to afford 13k. NOESY analysis of 13k was used to confirm the relative positions of 3,4-diamide groups formed. NOE correlations between an H of the

Recent developments in the asymmetric Reformatsky-type reaction

• Hélène Pellissier

Beilstein J. Org. Chem. 2018, 14, 325–344, doi:10.3762/bjoc.14.21

• prepiscibactin through five supplementary steps, including Zn(II)-induced thiazolidine formation followed by lactamization. On the basis of NOE methods, the synthetic prebiscibactin was found spectroscopically indistinguishable from the natural product. More recently, excellent results were also reported by

¹⁵N-Labelling and structure determination of adamantylated azolo-azines in solution

• Sergey L. Deev,
• Alexander S. Paramonov,
• Tatyana S. Shestakova,
• Igor A. Khalymbadzha,
• Oleg N. Chupakhin,
• Julia O. Subbotina,
• Oleg S. Eltsov,
• Pavel A. Slepukhin,
• Vladimir L. Rusinov,
• Alexander S. Arseniev and
• Zakhar O. Shenkarev

Beilstein J. Org. Chem. 2017, 13, 2535–2548, doi:10.3762/bjoc.13.250

• ROESY) also did not provide unequivocal structures of the N-adamantylated derivatives [13][14]. For example, the attachment of an adamantyl group to the N1 or N3 atom in the azole ring of compounds 5 and 6 could not be distinguished by NOE data. Similar problems with the unambiguous determination of the

• the studies of N-alkylated heterocyclic compounds with a high abundance of nitrogen nuclei, where 13C chemical shifts and 1H-1H NOE data cannot provide reliable structural information. The incorporation of the 15N-labels also permitted the study of the mechanism of isomerization of N-adamantylated

Synthesis of ergostane-type brassinosteroids with modifications in ring A

• Vladimir N. Zhabinskii,
• Darya A. Osiyuk,
• Yuri V. Ermolovich,
• Natalia M. Chaschina,
• Tatsiana S. Dalidovich,
• Miroslav Strnad and
• Vladimir A. Khripach

Beilstein J. Org. Chem. 2017, 13, 2326–2331, doi:10.3762/bjoc.13.229

• transformed, on treatment with KOH, into the epoxide 24. The structures of isomeric epoxides 22 and 24 were confirmed by their NOESY spectra as shown in Scheme 4. The obvious NOE correlation between H-3 and H-5 in 24 suggested the spatial vicinity of these two protons, thus the epoxide ring was β-oriented. On

Difunctionalization of alkenes with iodine and tert-butyl hydroperoxide (TBHP) at room temperature for the synthesis of 1-(tert-butylperoxy)-2-iodoethanes

• Hao Wang,
• Cui Chen,
• Weibing Liu and
• Zhibo Zhu

Beilstein J. Org. Chem. 2017, 13, 2023–2027, doi:10.3762/bjoc.13.200

• excellent yields. Especially, according to the detection of NMR and NOE analysis, the substrate 1-methylcyclopent-1-ene (1t) affords (1R,2R)-1-(tert-butylperoxy)-2-iodo-1-methylcyclopentane (2t) as the only product. And even more exciting this reaction was easily scaled up to 10 mmol with no obvious loss in

The chemistry and biology of mycolactones

• Matthias Gehringer and
• Karl-Heinz Altmann

Beilstein J. Org. Chem. 2017, 13, 1596–1660, doi:10.3762/bjoc.13.159

Switchable highly regioselective synthesis of 3,4-dihydroquinoxalin-2(1H)ones from o-phenylenediamines and aroylpyruvates

• Juraj Dobiaš,
• Marek Ondruš,
• Gabriela Addová and
• Andrej Boháč

Beilstein J. Org. Chem. 2017, 13, 1350–1360, doi:10.3762/bjoc.13.132

• chain like in 3 (Scheme 1). This knowledge, in combination with a simple NOE experiment (interaction H-N(4) with a narrow doublet of H-C(5) (ca 1.5 Hz) in SYN or H-N(4) with a broad doublet of H-C(5) (8.4 Hz) in ANTI, allows for the determination of the regioisomerism more effectively (no need for HMBC

• ), in the case that the NOE experiment was performing (which was not always the case). The same approach to distinguish regioisomers can be applied on space interactions between H-N(1) and H-C(8) signals (NOESY in Figure 2 or for NOE see the Supporting Information File 1). Finally, all six regioisomeric

• -dihydroquinoxaline-2(1H)-ones. Their ANTI (17) or SYN (16) structures were assigned by complex 2D NMR techniques (HSQC, NOESY and HMBC) or by a proposed simplified method (NOE interaction between higher 1H NMR (DMSO-d6) shifted H-N(4), bonded by intramolecular hydrogen bond, and H-C(5) or interaction of lower

Total synthesis of elansolids B1 and B2

• Liang-Liang Wang and
• Andreas Kirschning

Beilstein J. Org. Chem. 2017, 13, 1280–1287, doi:10.3762/bjoc.13.124

• desired (Z,E,Z)-configured triene 19. Again, we did not encounter formation of stereoisomers in the triene unit. The configuration of the triene was unequivocally assigned by analysis of coupling constants (J) and by measuring nuclear Overhauser effects (nOe). Finally, desilylation and global

New tricks of well-known aminoazoles in isocyanide-based multicomponent reactions and antibacterial activity of the compounds synthesized

• Maryna V. Murlykina,
• Maryna N. Kornet,
• Sergey M. Desenko,
• Svetlana V. Shishkina,
• Oleg V. Shishkin,
• Aleksander A. Brazhko,
• Vladimir I. Musatov,
• Erik V. Van der Eycken and
• Valentin A. Chebanov

Beilstein J. Org. Chem. 2017, 13, 1050–1063, doi:10.3762/bjoc.13.104

• analysis (Figure 3). In the case of compounds 9 the presence of NOE between the signals of the methyl group and the CH group in the isoxazole moiety allowed to distinguish closely located signals of two CH groups (Figure 4). Ultimately, the structure of compounds 9 was proven by an X-ray analysis of

• . Selected data of NOE and HSQC experiments for compound 9d. Molecular structure of N-(2-(tert-butylamino)-1-(4-chlorophenyl)-2-oxoethyl)-N-(5-methylisoxazol-3-yl)-3-phenylpropiolamide (9e) (X-ray diffraction data). Non-hydrogen atoms are presented as thermal ellipsoids with 50% probability. Aminoazoles in

Cycloheximide congeners produced by Streptomyces sp. SC0581 and photoinduced interconversion between (E)- and (Z)-2,3-dehydroanhydrocycloheximides

• Li Yang,
• Ping Wu,
• Jinghua Xue,
• Huitong Tan,
• Zheng Zhang and
• Xiaoyi Wei

Beilstein J. Org. Chem. 2017, 13, 1039–1049, doi:10.3762/bjoc.13.103

• pseudo-axial positions and on the same face of the cyclohexenone ring. This was further corroborated by the presence of strong NOE correlations of H3-8 with both H5ax and H5eq and of H5eq with both H6 and H4 in the NOESY spectrum (Figure 2). It was also in agreement with no NOE correlation being detected

• with the diagnostic NOE interaction of Hα/H5eq observed in the NOESY spectrum. In turn, (4R,6R,αR)-1 afforded the dominant conformers (accounting for about 82% equilibrium populations), as represented by the global energy minimum (R)-1a1 (Figure 2), having an anti relationship (ΦH6/Hα ≈ 174°) between

• Hα/H6, which were inconsistent with the small JH6/Hα value (4.3 Hz) and the absence of an NOE correlation between Hα/H5ax in the experimental spectra. Accordingly, the relative configuration of 1 was assigned to be 4R*,6R*,αS*. In order to determine the absolute configuration, the low-energy

Synthesis of D-manno-heptulose via a cascade aldol/hemiketalization reaction

• Yan Chen,
• Xiaoman Wang,
• Junchang Wang and
• You Yang

Beilstein J. Org. Chem. 2017, 13, 795–799, doi:10.3762/bjoc.13.79

• , and 2D NMR spectra (see Supporting Information File 1 for details). The anomeric α-configuration of compound 2 was confirmed by analysis of the NOE effects between the C-1 hydrogen and the C-5 hydrogen. With the ketoheptose building block 2 in hand, we turned our attention to the synthesis of D-manno

Synthesis of ribavirin 2’-Me-C-nucleoside analogues

• Fanny Cosson,
• Aline Faroux,
• Jean-Pierre Baltaze,
• Jonathan Farjon,
• Régis Guillot,
• Jacques Uziel and
• Nadège Lubin-Germain

Beilstein J. Org. Chem. 2017, 13, 755–761, doi:10.3762/bjoc.13.74

• 1D NOESY experiments (Figure 4). First, the hydrogen H3’ in 13a and 13b was selectively excited. The nOes observed for compound 13a are in the following order of decreasing intensity: CH3 > H5’a > H5’b-H4’ > H1’ confirming that CH3 and H3’ are spatially close. In the case of 13b the nOe intensities

Inclusion complexes of β-cyclodextrin with tricyclic drugs: an X-ray diffraction, NMR and molecular dynamics study

• Franca Castiglione,
• Fabio Ganazzoli,
• Luciana Malpezzi,
• Andrea Mele,
• Walter Panzeri and
• Giuseppina Raffaini

Beilstein J. Org. Chem. 2017, 13, 714–719, doi:10.3762/bjoc.13.70

• 7, 20131 Milano, Italy 10.3762/bjoc.13.70 Abstract Tricyclic fused-ring cyclobenzaprine (1) and amitriptyline (2) form 1:1 inclusion complexes with β-cyclodextrin (β-CD) in the solid state and in water solution. Rotating frame NOE experiments (ROESY) showed the same geometry of inclusion for both 1

• . Keywords: amitriptyline; β-cyclodextrin; crystal structure; cyclobenzaprine; molecular dynamics simulations; NOE; Introduction The present paper reports on a multidisciplinary approach [1][2] based on single crystal X-ray diffraction, solution NMR spectroscopy and molecular dynamics (MD) simulations with

• intermolecular contacts with H5’ and H3’ of the β-CD, indicating that the ring system of 1 is deeply inserted into the cavity of the β-CD. The selective NOE between H12 and H3’ suggests that the alkylammonium chain is protruding out of the β-CD cavity from the secondary OH rim. The analysis of intermolecular

Isoxazole derivatives as new nitric oxide elicitors in plants

• Anca Oancea,
• Emilian Georgescu,
• Florentina Georgescu,
• Alina Nicolescu,
• Elena Iulia Oprita,
• Catalina Tudora,
• Lucian Vladulescu,
• Marius-Constantin Vladulescu,
• Florin Oancea and
• Calin Deleanu

Beilstein J. Org. Chem. 2017, 13, 659–664, doi:10.3762/bjoc.13.65

• experiments. The 3,5-disubstitution was also experimentally proven by NOE experiments which indicated through space interaction between the H-4 proton and the protons from both 3- and 5- substituents. Biological activity We investigated the inductor effects of 3,5-disubstituted isoxazoles 6–11 on NO and

Secondary metabolome and its defensive role in the aeolidoidean Phyllodesmium longicirrum, (Gastropoda, Heterobranchia, Nudibranchia)

• Alexander Bogdanov,
• Cora Hertzer,
• Stefan Kehraus,
• Samuel Nietzer,
• Sven Rohde,
• Peter J. Schupp,
• Heike Wägele and
• Gabriele M. König

Beilstein J. Org. Chem. 2017, 13, 502–519, doi:10.3762/bjoc.13.50

• constants to the vicinal axial H-2β and H-4β of 12 Hz and to the equatorial H-2α and H-4α of 6 Hz. NOE correlations of H-3 to H-1α, H-2α and H-4α indicate thus an α-orientation of axial H-3 and a β-orientation of the equatorial hydroxy group at C-3. The identical 13C NMR shift of C-3 (δC 68.0) with the

• -orientation of the substituent at the bridge head carbon C-5. NOEs between the resonances for H-2β as well as H-1β to H3-19 showed the latter to be β-orientated, and thus the trans configuration of the decaline system. The 1H NMR signal at δH 3.66 for H-6 exhibited NOE correlation with H-4α (δH 1.70, m

• ) indicating β-orientation of the equatorial OH-group at C-6. Contrary to the reported epoxy-secosteroid by Naz et al. [22], no NOE was observed between the resonances of H-6 and β-oriented H3-19 confirming the β-orientation of the hydroxy group at C-6 (see Figure 5). NOE correlations between H3-19 and H-8, as

Multicomponent synthesis of spiropyrrolidine analogues derived from vinylindole/indazole by a 1,3-dipolar cycloaddition reaction

• Manjunatha Narayanarao,
• Lokesh Koodlur,
• Vijayakumar G. Revanasiddappa,
• Subramanya Gopal and
• Susmita Kamila

Beilstein J. Org. Chem. 2016, 12, 2893–2897, doi:10.3762/bjoc.12.288

• which showed NOE interactions between H1 and H2 on the asymmetric carbon atoms correlated to the syn-configuration (Figure 1). Upon irradiation of H1 the NOE enhancement was observed for H3 and H4 and the same was observed by irradiation of the ring-junction proton H2. The regioselectivity of cyclic

• compounds that could find use in different areas of chemistry. The advantages of the synthesis described are its ease of execution, short reaction times and diversity of the products synthesized. NOE interactions in compound 8c supporting the stereochemical assignments for 8a–k. H1 and H2 on the asymmetric

Synthesis of spiro[isoindole-1,5’-isoxazolidin]-3(2H)-ones as potential inhibitors of the MDM2-p53 interaction

• Salvatore V. Giofrè,
• Santa Cirmi,
• Raffaella Mancuso,
• Francesco Nicolò,
• Giuseppe Lanza,
• Laura Legnani,
• Agata Campisi,
• Maria A. Chiacchio,
• Michele Navarra,
• Bartolo Gabriele and
• Roberto Romeo

Beilstein J. Org. Chem. 2016, 12, 2793–2807, doi:10.3762/bjoc.12.278

• -range coupling was detected between H9 and C18 (43.40 ppm), the carbon atom of the benzyl group at N2. NOE experiments support the assigned stereochemical relationships. In agreement with the internuclear distance values, obtained from computational data (see Supporting Information File 1), irradiation

• of H9, in compound 6a, induces a positive NOE effect for methylene protons at C7 (4.25 and 4.06 ppm), while, for 7a, a NOE enhancement was observed for methylene protons at C18 (5.06 and 4.82 ppm) (Figure 3). Furthermore, X-ray diffraction measurements confirm the structural assignment. Unfortunately

Computational methods in drug discovery

• Sumudu P. Leelananda and
• Steffen Lindert

Beilstein J. Org. Chem. 2016, 12, 2694–2718, doi:10.3762/bjoc.12.267

• [68]. NMR information has been used in many studies to intelligently guide protein structure prediction [69][70][71]. NMR Nuclear Overhauser Effect (NOE) data and chemical shifts have been used in combination with Rosetta ab initio structure prediction to obtain better protein structure predictions

Enduracididine, a rare amino acid component of peptide antibiotics: Natural products and synthesis

• Darcy J. Atkinson,
• Briar J. Naysmith,
• Daniel P. Furkert and
• Margaret A. Brimble

Beilstein J. Org. Chem. 2016, 12, 2325–2342, doi:10.3762/bjoc.12.226

• ) were isolated from Streptomyces hygroscopicus LL-AC98 in 2002 [7] and their structures were elucidated using mass spectrometry and extensive NMR analysis. The absolute stereochemistry was proposed following degradation and nOe studies. The configuration of the β-methylphenylalanine stereocentre was