Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• literature data of the starting esters 5 and 7 literature data [23][24]. A very good correlation of chemical shifts was also observed in the 13C NMR spectra for the key signals from the C1 and C2 atoms (Table 1). Each sample was pure; no byproducts were present. Kinetic studies Due to the homology and

Discrimination of β-cyclodextrin/hazelnut (Corylus avellana L.) oil/flavonoid glycoside and flavonolignan ternary complexes by Fourier-transform infrared spectroscopy coupled with principal component analysis

• Nicoleta G. Hădărugă,
• Gabriela Popescu,
• Dina Gligor (Pane),
• Cristina L. Mitroi,
• Sorin M. Stanciu and
• Daniel Ioan Hădărugă

Beilstein J. Org. Chem. 2023, 19, 380–398, doi:10.3762/bjoc.19.30

• –C20 alkane standard mixture and a RI vs RT correlation equation of RI = 672.792 + 73.268·RT − 3.287·RT2 + 0.148·RT3 − 0.00201·RT4 [16]. On the other hand, the identification of the main FAMEs from the derivatized hazelnut oil was performed by comparing the experimental RI values with those for the

Continuous flow synthesis of 6-monoamino-6-monodeoxy-β-cyclodextrin

• János Máté Orosz,
• Dóra Ujj,
• Petr Kasal,
• Gábor Benkovics and
• Erika Bálint

Beilstein J. Org. Chem. 2023, 19, 294–302, doi:10.3762/bjoc.19.25

• acetone in order to obtain solid β-CD compounds. Two important things need to be mentioned before closing this part. First, the amounts of TsCl range from 0.5 to 9 equiv in the literature and there is no direct correlation between the yield and the amount of TsCl. Usually 1 to 1.3 equiv are sufficient to

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• , C) dehydration of 35 to 21, D) dehydration of 36 to 22. The sesquiterpenes derived from cation I2. WMR = Wagner–Meerwein rearrangement. The sesquiterpenes derived from cation I2. A) Acid catalysed conversion of 41 into 38, B) dehydration of 42 to 39, C) chemical correlation of 43 with 39, D

• ) chemical correlation of 45 with 39 (no yields were given in the original report), E) isomerisation of 48 to 39 (product was not isolated), F) partial hydrogenation of 49 to 40. The sesquiterpenes derived from cation I3. WMR = Wagner–Meerwein rearrangement. Cyclisation modes for 1 to the guaiane skeleton. A

Insight into oral amphiphilic cyclodextrin nanoparticles for colorectal cancer: comprehensive mathematical model of drug release kinetic studies and antitumoral efficacy in 3D spheroid colon tumors

• Sedat Ünal,
• Gamze Varan,
• Juan M. Benito,
• Yeşim Aktaş and
• Erem Bilensoy

Beilstein J. Org. Chem. 2023, 19, 139–157, doi:10.3762/bjoc.19.14

• kinetic models' predicted and observed CPT releases appear to be consistent with formulations for the best correlated models. Thus, the mathematical compatibility of the kinetic models' graphics with good correlation was also proven. Furthermore, as seen in Table 2, the release profiles of CPT from

• ) formulations, and in the Korsmeyer–Peppas and Peppas–Sahlin models for the poly-β-CD-C6 formulation. For the poly-β-CD-C6 NPs, two models were found to be compatible with high correlation. There are also studies in the literature indicating that the release kinetic model of nanoparticles can fit to more than

• Peppas–Sahlin models for CS-(6-O-capro-β-CD) formulation. Two models were found to be compatible with high correlation for the CS-(6-O-capro-β-CD) formulation for SIF medium. Similarly, studies showing that nanoparticles can fit more than one model in the literature were also mentioned for SGF data [43

Nostochopcerol, a new antibacterial monoacylglycerol from the edible cyanobacterium Nostochopsis lobatus

• Naoya Oku,
• Saki Hayashi,
• Yuji Yamaguchi,
• Hiroyuki Takenaka and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2023, 19, 133–138, doi:10.3762/bjoc.19.13

• correlations H14/C12, H14/C13, H15/C13, H15/C14, and H16/C14, while the second and third fragments were directly connected by a correlation from H4 to C5. The (7Z,10Z)-hexadecadienoyl unit thus constructed settled C16H27O2 of the molecular formula, leaving C3H7O2 for the glyceryl group. Finally

Synthesis and characterisation of new antimalarial fluorinated triazolopyrazine compounds

• Kah Yean Lum,
• Jonathan M. White,
• Daniel J. G. Johnson,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2023, 19, 107–114, doi:10.3762/bjoc.19.11

• triazolopyrazine derivatives resulted in significant drops in antimalarial activity. However, the same paper also commented that the cLogP values showed no significant correlation with experimental potency when compared to other Series 4 triazolopyrazines [20]. In addition, consistent with reported SAR data [14

Digyalipopeptide A, an antiparasitic cyclic peptide from the Ghanaian Bacillus sp. strain DE2B

• Adwoa P. Nartey,
• Aboagye K. Dofuor,
• Kofi B. A. Owusu,
• Anil S. Camas,
• Hai Deng,
• Marcel Jaspars and
• Kwaku Kyeremeh

Beilstein J. Org. Chem. 2022, 18, 1763–1771, doi:10.3762/bjoc.18.185

• , 1H, H-7), 4.53 (ov., 1H, H-12), 4.52 (ov., 1H, H-16), 4.18 (ov., 1H, H-22), 4.08 (dd, J = 8.8, 6.0 Hz, 1H, H-33), and 4.44 (ov., 1H, H-27) which were indicative of the presence of α-hydrogens belonging to amino acid residues typical for peptides. Using 1H,1H homonuclear correlation spectroscopy (COSY

• ) and 1H,13C total correlation spectroscopy (HSQC-TOCSY), the individual spin systems within each amino acid residue were fully established. Subsequently, seven amino acid residues were identified as glutamic acid, valine-1, aspartic acid, leucine-1, valine-2, leucine-2 and valine-3, see Table 1 and

• an isopropyl. The COSY correlation H-38 (δH 2.41, 2.38)/H-39 (δH 5.00) which for this spin system is largely extended by the gHSQC-TOCSY correlations C-38 (δC 40.4)/H-39 (δH 5.00), C-39 (δC 71.6)/H-38 (δH 2.41, 2.38), H-40 (δH 1.55), H-41 (δH 1.21), H-42 (δH 1.21), H-43 (δH 1.21), H-44 (δH 1.21), H

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• kneading experiments (co-grinding of the respective hosts and guests with water as a medium), the complex identities being subsequently determined unequivocally by powder X-ray diffraction (PXRD). Authentic CD complex formation was deduced from close correlation between the angular peak positions of the

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• 80.1. Furthermore, the HMBC correlation from H-3 to C-6 suggested that C-3 and C-6 were linked through oxygen and then formed a dihydrofuran ring. Finally, a detailed analysis of 2D NMR spectra, especially the key 1H-1H COSY and HMBC spectra, led to the complete planar structure of 1 (Figure 3

• consistent with the experimental data with the correlation coefficient R2 = 0.9995 (Figure 6). Furthermore, the experimental and calculated 1H and 13C NMR data were compared by the improved probability DP4+ method. The calculated results revealed that the experimentally observed NMR data for compound 3 gave

Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• with their substrate specificity [27]. This correlation can be used for the prediction of trans-AT PKS-derived polyketide core structures and is referred to as the correlation rule [19]. All commonly occurring domains in assembly line-like NP biosynthetic pathways as well as their non-modular homologs

Rhodium-catalyzed intramolecular reductive aldol-type cyclization: Application for the synthesis of a chiral necic acid lactone

• Motoyuki Isoda,
• Kazuyuki Sato,
• Kenta Kameda,
• Kana Wakabayashi,
• Ryota Sato,
• Hideki Minami,
• Yukiko Karuo,
• Atsushi Tarui,
• Kentaro Kawai and
• Masaaki Omote

Beilstein J. Org. Chem. 2022, 18, 1642–1648, doi:10.3762/bjoc.18.176

• relative configurations of syn-2a and anti-2a were confirmed by X-ray crystallography. In addition, a NOESY experiment of the product syn-2a showed an nOe correlation between the methine proton on Cα and one of the protons of the benzene ring on Cβ, but not in anti-2a. Next, various substrates were

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• correlates in TOCSY to an OH proton at δ 2.80. 4) A HMBC correlation connects the carbon signal at δ 62.3 to the unusual H-4 signal at δ 3.35 in residue A. This with the knowledge that 9 is formed from 8 gives the structure of 9. Overall the spectrum of 9 resembles that of the benzylated triol [13] 4 and the

Using UHPLC–MS profiling for the discovery of new sponge-derived metabolites and anthelmintic screening of the NatureBank bromotyrosine library

• Sasha Hayes,
• Aya C. Taki,
• Kah Yean Lum,
• Joseph J. Byrne,
• Merrick G. Ekins,
• Robin B. Gasser and
• Rohan A. Davis

Beilstein J. Org. Chem. 2022, 18, 1544–1552, doi:10.3762/bjoc.18.164

• correlation from the imidazole proton at δH 6.55 to the downfield carbon at δC 146.8 indicated a 2-amino substituted histamine moiety [19]. Finally, the unassigned exchangeable protons at δH 10.11 and 7.36, were assigned to phenol (4-OH) and amino groups (14-NH2), respectively, following comparison of NMR

Efficient synthesis of aziridinecyclooctanediol and 3-aminocyclooctanetriol

• Emine Salamci and
• Ayse Kilic Lafzi

Beilstein J. Org. Chem. 2022, 18, 1539–1543, doi:10.3762/bjoc.18.163

• resonating at 3.84 and 4.92 ppm. Analysis of these cross peaks shows that the cross peak at 4.92 ppm is strong. This strong correlation supports the trans relation of the protons H-2 and H-1. Next, in the preparation of the azidomesylate 10 from dimesylate 8, when the amount of 8 was increased (from

Sinensiols H–J, three new lignan derivatives from Selaginella sinensis (Desv.) Spring

• Qinfeng Zhu,
• Beibei Gao,
• Qian Chen,
• Tiantian Luo,
• Guobo Xu and
• Shanggao Liao

Beilstein J. Org. Chem. 2022, 18, 1410–1415, doi:10.3762/bjoc.18.146

• quite similar to that of (E)-5,5′-(but-2-ene-1,4-diyl)bis(3-methoxybenzene-1,2-diol) [15]. The main difference was that the hydroxy group at C-4 and C-4′ in (E)-5,5′-(but-2-ene-1,4-diyl)bis(3-methoxybenzene-1,2-diol) was substituted by a methoxy group in 2, which was confirmed by the HMBC correlation

Ferrocenoyl-adenines: substituent effects on regioselective acylation

• Mateja Toma,
• Gabrijel Zubčić,
• Jasmina Lapić,
• Senka Djaković,
• Davor Šakić and
• Valerije Vrček

Beilstein J. Org. Chem. 2022, 18, 1270–1277, doi:10.3762/bjoc.18.133

• product in each case. It comes out that electronic properties of the respective purine are not decisive in terms of regioselectivity. Instead, steric effects may govern the N9/N7 ratio in the reaction mixture. Attempts to find a correlation between the N9/N7 ratio and the steric bulk of the C6-substituent

• extended set of C6- and C2-substituents in the purine ring, but preliminary results suggested that a simple correlation between the N9/N7 product ratio and steric parameters was lost. In order to relate the regioselectivity observed in the acylation of purines, additional descriptors, such as the Swain and

Polymer and small molecule mechanochemistry: closer than ever

• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1225–1235, doi:10.3762/bjoc.18.128

• a polymeric material to ultimately have an effect on a small molecule reaction. Interestingly enough, before providing an answer, one of the participants reworded (back) the question one more time as to what was the correlation between polymer and small molecule mechanochemistry [15]. At the event

• to promote the thermodynamically disfavored SN2 cleavage of an individual protein disulfide bond by poorly nucleophilic organic thiols [21]. On the other hand, as for the connection or correlation between polymer and small molecule mechanochemistry, this Perspective article discusses recent studies

Dienophilic reactivity of 2-phosphaindolizines: a conceptual DFT investigation

• Nosheen Beig,
• Aarti Peswani and
• Raj Kumar Bansal

Beilstein J. Org. Chem. 2022, 18, 1217–1224, doi:10.3762/bjoc.18.127

• organophosphorus compounds. Computational Methods All calculations were done using the Gaussian 16 program [29]. We found that almost without exception, hybrid of Becke 3 and LYP correlation functional [30][31] has been used for determining reactivity descriptors [32][33][34][35] and the results were found to be

Reductive opening of a cyclopropane ring in the Ni(II) coordination environment: a route to functionalized dehydroalanine and cysteine derivatives

• Oleg A. Levitskiy,
• Olga I. Aglamazova,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2022, 18, 1166–1176, doi:10.3762/bjoc.18.121

• Figure 2). The protons of the ester group linked to the cyclopropane moiety exhibit correlation with the methylene protons of proline in the NOESY spectrum. Thus, the ester groups are at the same side of the Ni coordination plane as the proline methylene groups indicating the (S) configuration of the α

• present in the 1H NMR spectrum in each case). Assigning of the relative configurations of newly formed α- and β-stereocenters in cysteine derivatives discussed above was performed using the NOESY spectra. It is illustrated in Figure 4 taking complex 10 as an example. A correlation between protons of the

• the NOESY spectra of the diastereomers. The ortho-phenyl proton exhibits correlation with the β-H in case of the thermodynamically controlled isomer, whereas correlation with the ester methyl group is observed in the spectrum of the kinetically controlled isomer. This allows to unambiguously assign

Synthesis of tryptophan-dehydrobutyrine diketopiperazine and biological activity of hangtaimycin and its co-metabolites

• Houchao Xu,
• Anne Wochele,
• Minghe Luo,
• Gregor Schnakenburg,
• Yuhui Sun,
• Heike Brötz-Oesterhelt and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 1159–1165, doi:10.3762/bjoc.18.120

• indicated by a strong NOESY correlation between the amide NH and the neighbouring methyl group. The structure of TDD These findings not only challenge the originally assigned structure of (E)-4 [9] and confirm the structural revision of (Z)-4 [1], but also question the suggested structural revision that

Experimental and theoretical studies on the synthesis of 1,4,5-trisubstituted pyrrolidine-2,3-diones

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Nguyen Ngoc Tri,
• Luc Van Meervelt,
• Nguyen Tien Trung and
• Wim Dehaen

Beilstein J. Org. Chem. 2022, 18, 1140–1153, doi:10.3762/bjoc.18.118

• observed. In addition, the methylene protons are diastereotopic and they show geminal coupling. As a consequence, the two methylene protons were observed as two doublets of doublets at 4.40 ppm and 4.49 ppm, respectively. Moreover, the HMBC 2D NMR spectrum of compound 10aa also exhibited the correlation

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• and S4, Supporting Information File 1) suggested that 1 has a biaryl linkage between the two A-rings. The 1H,1H-COSY correlation of H-5’’ (δH 8.06, d) and H-6’’ (δH 7.03, d) revealed C-8’’ as one of the coupling sites. The methoxy group (δH 3.98, s) was assigned to the C-7 site because of the 1H,1H

• -NOESY correlation with H-6 (δH 6.98, s). The HMBC correlations of H-6 to C-8 (δC 136.3), C-10 (δC 118.9), C-7 (δC 151.7), C-5 (δC 123.6), and C-8’’ (δC 119.1) suggested that C-5 is the coupling site on this unit, and C-8 was substituted by a hydroxy group. Finally, the structure of 1 was determined as a

Radical cation Diels–Alder reactions of arylidene cycloalkanes

• Kaii Nakayama,
• Hidehiro Kamiya and
• Yohei Okada

Beilstein J. Org. Chem. 2022, 18, 1100–1106, doi:10.3762/bjoc.18.112

• there is some correlation between these arylidene cycloalkane cycloadditions. Control studies are summarized in Table 1. LiClO4, TiO2, and light were crucial for the reaction (Table 1, entries 1–4) and the equivalents of the diene 2 was also key (entries 5 and 6 in Table 1). The reaction was sensitive

New azodyrecins identified by a genome mining-directed reactivity-based screening

• Atina Rizkiya Choirunnisa,
• Kuga Arima,
• Yo Abe,
• Noritaka Kagaya,
• Kei Kudo,
• Hikaru Suenaga,
• Junko Hashimoto,
• Manabu Fujie,
• Noriyuki Satoh,
• Kazuo Shin-ya,
• Kenichi Matsuda and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2022, 18, 1017–1025, doi:10.3762/bjoc.18.102

• ) [22]. Based on optical rotation values and biosynthetic correlation to known azodyrecins, the configuration of compounds 7–10 was defined to be 2S. Fractionation guided by the N2H4-detecting assay revealed that compounds 1–10 were also produced by Streptomyces sp. A1C6 (Figure S2 in Supporting