A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• succeed to obtain single crystals of our metallosupramolecular assemblies that were suitable for single-crystal X-ray diffraction experiments. Therefore, we generated energy-minimized gas phase structures of 4, employing a force-field approach using the GFN2-xTB approach recently established to model

Selective and reversible 1,3-dipolar cycloaddition of 6-aryl-1,5-diazabicyclo[3.1.0]hexanes with 1,3-diphenylprop-2-en-1-ones under microwave irradiation

• Alexander P. Molchanov,
• Mariia M. Efremova,
• Mariya A. Kryukova and
• Mikhail A. Kuznetsov

Beilstein J. Org. Chem. 2020, 16, 2679–2686, doi:10.3762/bjoc.16.218

• ). Accordingly, two characteristic signals for carbon atoms of the pyrazolidine ring are present in the 13C NMR spectrum – at 72.2 (2СН) and 68.7 (СН) ppm. The spatial configuration of the adducts 3e and 3g was further determined by single crystal X-ray diffraction analysis (Figure 1 and Figure 2). All products

• Resonance, Center for Chemical analysis and materials research and X-ray Diffraction Center, respectively.

Particle size effect in the mechanically assisted synthesis of β-cyclodextrin mesitylene sulfonate

• Stéphane Menuel,
• Sébastien Saitzek,
• Eric Monflier and
• Frédéric Hapiot

Beilstein J. Org. Chem. 2020, 16, 2598–2606, doi:10.3762/bjoc.16.211

• (Table 1). As expected, an increase in the SSA was observed upon grinding because of the reduction of the β-CD particle size. XRD analysis X-ray diffraction data give additional evidence for the crystallinity variation of the β-CD particles upon grinding. Figure 3 shows a series of X-ray powder

• diffraction X-ray diffraction (XRD) measurements were performed using a Rigaku ULTIMA IV diffractometer equipped with Cu anticathode (λKα = 1.5418 Å), Soller slits to limit the divergence of X-ray beam and a nickel foil filter to attenuate the CuKβ line. XRD patterns were recorded in the range of 3–50° (scan

Thermodynamic and electrochemical study of tailor-made crown ethers for redox-switchable (pseudo)rotaxanes

• Henrik Hupatz,
• Marius Gaedke,
• Hendrik V. Schröder,
• Julia Beerhues,
• Arto Valkonen,
• Fabian Klautzsch,
• Sebastian Müller,
• Felix Witte,
• Kari Rissanen,
• Biprajit Sarkar and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2020, 16, 2576–2588, doi:10.3762/bjoc.16.209

• Information File 1). Slow diffusion of CH3CN into a concentrated solution of NDIC7 in CH2Cl2 yielded single crystals suitable for X-ray diffraction (Figure 2b). The macrocycle displays a folded conformation in the solid state due to the flexible linker, featuring an intramolecular NDI/naphthalene stacking

Synthesis of novel fluorinated building blocks via halofluorination and related reactions

• Attila Márió Remete,
• Tamás T. Novák,
• Melinda Nonn,
• Matti Haukka,
• Ferenc Fülöp and
• Loránd Kiss

Beilstein J. Org. Chem. 2020, 16, 2562–2575, doi:10.3762/bjoc.16.208

• (rac)-11b was unequivocally established by single-crystal X-ray diffraction (Figure 1). Then, the preparation of another model compound, the trans-annelated bicyclic carbamide derivative (rac)-13, was attempted. This compound was also unknown in the literature. In the reaction of commercially available

• both NOESY measurements and single-crystal X-ray diffraction (Figure 2 and Figure 3). The next rigid bicyclic system studied was the methyl diendo norbornene dicarboxylate 16. The treatment of 16 with NBS/Deoxo-Fluor® yielded the bromolactone (rac)-17a [37]. The reaction, when repeated only with NBS

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• the slight shift of the peaks further indicates the successful complexation of TBTQ-(OG)6 and C60. Simulations of complex TBTQ-(OG)6 C60 in water. In spite of numerous attempts, we failed to obtain good-quality crystals to determine the binding conformation of complex TBTQ-(OG)6 C60 by X-ray

• diffraction. Therefore, the optimized geometry of the 1:1 complex of TBTQ-(OG)6 C60 in water was simulated by density functional theory (DFT) calculations at the B3LYP/6-31G(d) level of theory, which was completed with the aid of Molclus, MOPAC, and ORCA 4.1.0 programs [54][55][56]. As shown in Figure 6, C60

Palladium nanoparticles supported on chitin-based nanomaterials as heterogeneous catalysts for the Heck coupling reaction

• Tony Jin,
• Malickah Hicks,
• Davis Kurdyla,
• Sabahudin Hrapovic,
• Edmond Lam and
• Audrey Moores

Beilstein J. Org. Chem. 2020, 16, 2477–2483, doi:10.3762/bjoc.16.201

• nanomaterials. Specifically, the deacetylation of ChNC into ChsNC led to a decrease in crystallinity in the nanomaterial. Indeed, this can be seen in the FTIR with the broadening of the N–H and O–H stretches from 3000–3500 cm−1. This was more notable in the powder X-ray diffraction (PXRD) spectra of ChNCs and

Design and synthesis of a bis-macrocyclic host and guests as building blocks for small molecular knots

• Elizabeth A. Margolis,
• Rebecca J. Keyes,
• Stephen D. Lockey IV and
• Edward E. Fenlon

Beilstein J. Org. Chem. 2020, 16, 2314–2321, doi:10.3762/bjoc.16.192

• appeared to hinder the formation of crystals suitable for X-ray diffraction to prove the topology of the product. The second-generation TLC approach to trefoil knots is presented here. It involves the binding of an electron-poor guest (2 or 3) in an electron-rich host (1) to promote the threading step, an

Convenient access to pyrrolidin-3-ylphosphonic acids and tetrahydro-2H-pyran-3-ylphosphonates with multiple contiguous stereocenters from nonracemic adducts of a Ni(II)-catalyzed Michael reaction

• Alexander N. Reznikov,
• Dmitry S. Nikerov,
• Anastasiya E. Sibiryakova,
• Victor B. Rybakov,
• Evgeniy V. Golovin and
• Yuri N. Klimochkin

Beilstein J. Org. Chem. 2020, 16, 2073–2079, doi:10.3762/bjoc.16.174

• (Scheme 2). An X-ray diffraction study [50] of the formyl derivative 10a showed its (2R,3R,4S)-configuration (Figure 3). The absolute configuration of the other phosphonates 10b–d and 11b–d is assumed by analogy. Hydrogenation of phosphonates 6d,f with o-anisyl and bulky adamantan-1-yl substituents at the

• of Henry/acetalyzation reaction with phosphonate 6ea. Supporting Information Supporting Information File 451: Experimental procedures, copies of NMR, FTIR, and mass spectra, HPLC and X-ray diffraction data. Supporting Information File 452: Crystallographic information files (CIF). Funding The

Metal-free synthesis of phosphinoylchroman-4-ones via a radical phosphinoylation–cyclization cascade mediated by K₂S₂O₈

• Qiang Liu,
• Weibang Lu,
• Guanqun Xie and
• Xiaoxia Wang

Beilstein J. Org. Chem. 2020, 16, 1974–1982, doi:10.3762/bjoc.16.164

• (Table 1, entry 1). The structure of 3aa was unambiguously confirmed by X-ray diffraction analysis of a single crystal (Figure 2) and by NMR spectroscopy (see Supporting Information File 1) [33]. The increase of the amount of K2S2O8 to 3 equiv resulted in the improvement of the yield of 3aa to 52% (Table

• the optimized conditions (Scheme 4). The reaction afforded the desired product 3ba in a good yield of 56%, and the structure was also confirmed by X-ray diffraction (see Supporting Information File 1) [33]. To gain an insight into the reaction mechanism, we carried out some control experiments (Scheme

Synthesis of 3(2)-phosphonylated thiazolo[3,2-a]oxopyrimidines

• Ksenia I. Kaskevich,
• Anastasia A. Babushkina,
• Vladislav V. Gurzhiy,
• Dmitrij M. Egorov,
• Nataly I. Svintsitskaya and
• Albina V. Dogadina

Beilstein J. Org. Chem. 2020, 16, 1947–1954, doi:10.3762/bjoc.16.161

• thiazolopyrimidine-5-ones by reacting 6-methyl-2-thiouracils with bromoethynylketones has been reported by Shishkin and co-workers (Scheme 4) [20]. The authors for the first time proved the structure of the 5-oxo isomer by single crystal X-ray diffraction analysis. The Pd-catalyzed Sonogashira coupling reaction

• those for 3-phenylthiazolo[3,2-a]-5-oxopyrimidine [40]. In addition, the structures of the phosphonylated thiazolopyrimidines 3a and 3d were unambiguously confirmed by single crystal X-ray diffraction data. The presence of the CH3 group at the position 5 of the thiouracil ring changes the reaction

• NMR spectroscopy. In the 13C NMR spectra of the thiazolopyrimidines 6a–c, the O=C–CH=CH fragment is observed by signals of equal intensity at δC 112–113 and 135–136 ppm. However, the unambiguous proof of the structure of thiazolopyrimidine-7-one 6b was obtained by single crystal X-ray diffraction

Selective preparation of tetrasubstituted fluoroalkenes by fluorine-directed oxetane ring-opening reactions

• Clément Q. Fontenelle,
• Thibault Thierry,
• Romain Laporte,
• Emmanuel Pfund and
• Thierry Lequeux

Beilstein J. Org. Chem. 2020, 16, 1936–1946, doi:10.3762/bjoc.16.160

• major isomer were obtained by recrystallization. The X-ray diffraction analysis clearly showed that the bromine atom was located on the carbon trans to the fluorine atom resulting in the major product with the E-geometry (see Supporting Information File 1). It should be noted that longer reaction times

• ]. Pleasingly, when subjecting compound 4 to the previous reaction conditions, a single isomer of bromoalcohol 4d formed (determined by 1H NMR of the crude) and the product was isolated in an excellent yield of 94% (Table 2, entry 3). The geometry of the product was confirmed to be E-4d by X-ray diffraction

On the hydrolysis of diethyl 2-(perfluorophenyl)malonate

• Ilya V. Taydakov and
• Mikhail A. Kiskin

Beilstein J. Org. Chem. 2020, 16, 1863–1868, doi:10.3762/bjoc.16.153

• File 1). The structure of acid 12 in solid form was studied by single crystal X-ray diffraction experiments (Figure 3). The structural parameters were deposited at CCDC (deposit No. 1993963, see Supporting Information File 1 for details). Since basic conditions seem to be unsuitable for the hydrolysis

• Supporting Information File 148: Detailed information about experimental procedures, X-ray diffraction experiments for compound 12 and characterization data for compounds 3 and 12. Acknowledgements Single crystal X-ray diffraction analysis was performed using the equipment at the Centre for Collective Use

Synthesis and highly efficient light-induced rearrangements of diphenylmethylene(2-benzo[b]thienyl)fulgides and fulgimides

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Valerii V. Tkachev,
• Andrey N. Utenyshev,
• Olga Yu. Karlutova,
• Alexander D. Dubonosov,
• Vladimir A. Bren,
• Sergey M. Aldoshin and
• Vladimir I. Minkin

Beilstein J. Org. Chem. 2020, 16, 1820–1829, doi:10.3762/bjoc.16.149

• -isomers and of products of the photoinduced rearrangement completed by 1,5-H shift reaction, 3a,4-dihydronaphtho[2,3-c]furans(pyrroles) C, were established based on the data of 1H and 13C NMR spectroscopy and X-ray diffraction studies. Keywords: benzo[b]thiophene; fulgide; fulgimide; photorearrangement

• ; X-ray diffraction; Introduction Photochromic compounds are of considerable interest as molecular switches, elements of optical memory and molecular logic devices [1][2][3][4]. Fulgides and fulgimides possessing excellent thermal and photochemical stability, structurally modulated fluorescent

• afford exclusively fulgimides 3Z and 7E, respectively, as the single products (Scheme 2 and Scheme 3). According to IR, 1H and 13C NMR spectroscopy data Z- and E-isomers of fulgide 3 exist in the form of the open isomers O. This was also confirmed by X-ray diffraction study. The molecular structures of

Microwave-assisted efficient one-pot synthesis of N²-(tetrazol-5-yl)-6-aryl/heteroaryl-5,6-dihydro-1,3,5-triazine-2,4-diamines

• Moustafa Sherief Moustafa,
• Ramadan Ahmed Mekheimer,
• Saleh Mohammed Al-Mousawi,
• Mohamed Abd-Elmonem,
• Hesham El-Zorba,
• Afaf Mohamed Abdel Hameed,
• Tahany Mahmoud Mohamed and
• Kamal Usef Sadek

Beilstein J. Org. Chem. 2020, 16, 1706–1712, doi:10.3762/bjoc.16.142

• unequivocally supported by single-crystal X-ray diffraction (Figure 1 and Table 2). A plausible mechanism for the formation of products 4 is postulated in Scheme 3. The dimerization of cyanamide 1 in basic medium to cyanoguanidine 5 and subsequent reaction with 5-aminotetrazole (3) yielded tetrazolylbiguanidine

Clickable azide-functionalized bromoarylaldehydes – synthesis and photophysical characterization

• Dominik Göbel,
• Marius Friedrich,
• Enno Lork and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2020, 16, 1683–1692, doi:10.3762/bjoc.16.139

• previous deprotection reactions, fluorene 21 was converted by means of a three-step sequence to the desired azide-functionalized 7-bromofluorene-2-carbaldehyde 5 in 86% yield and an overall yield of 45% (starting from fluorene). The molecular structure of 5 could be verified by X-ray diffraction (XRD, see

Rearrangement of o-(pivaloylaminomethyl)benzaldehydes: an experimental and computational study

• Csilla Hargitai,
• Györgyi Koványi-Lax,
• Tamás Nagy,
• Péter Ábrányi-Balogh,
• András Dancsó,
• Gábor Tóth,
• Judit Halász,
• Angéla Pandur,
• Gyula Simig and
• Balázs Volk

Beilstein J. Org. Chem. 2020, 16, 1636–1648, doi:10.3762/bjoc.16.136

• ) coupled with a Dionex Ultimate 3000 RS HPLC (Sunnyvale, CA, USA) system with a diode array detector. HRMS spectra of the diastereomeric 23a and 23b compounds are shown on page S44 of Supporting Information File 1. Single-crystal X-ray diffraction (SC-XRD) measurements were carried out on a Rigaku R-Axis

Fluorohydration of alkynes via I(I)/I(III) catalysis

• Jessica Neufeld,
• Constantin G. Daniliuc and
• Ryan Gilmour

Beilstein J. Org. Chem. 2020, 16, 1627–1635, doi:10.3762/bjoc.16.135

• established by single crystal X-ray diffraction (Figure 2). Interestingly, a study by Pattison has established that α-fluoroketones preferentially adopt a cis-conformation in polar solvents [54]. In the solid state, a dihedral angle of φ = −3.7° was observed thereby placing the C–F bond in the same plane as

Five-component, one-pot synthesis of an electroactive rotaxane comprising a bisferrocene macrocycle

• Natalie Lagesse,
• Luca Pisciottani,
• Maxime Douarre,
• Pascale Godard,
• Brice Kauffmann,
• Vicente Martí-Centelles and
• Nathan D. McClenaghan

Beilstein J. Org. Chem. 2020, 16, 1564–1571, doi:10.3762/bjoc.16.128

• structure of rotaxane 1a was determined by single crystal X-ray diffraction of crystals obtained by slow evaporation of a dichloromethane solution. The analysis of the X-ray solid-state structure of the rotaxane 1a showed a significant difference to Leigh’s rotaxane I [4]. Rotaxane I only presented two

One-pot synthesis of 1,3,5-triazine-2,4-dithione derivatives via three-component reactions

• Gui-Feng Kang and
• Gang Zhang

Beilstein J. Org. Chem. 2020, 16, 1447–1455, doi:10.3762/bjoc.16.120

• structures of 1,3,5-triazine-2,4-dithione derivatives were characterized by spectroscopic techniques as well as by single crystal X-ray diffraction. Keywords: aldehydes; multicomponent reactions; nitrogen heterocycles; thiourea; triazinethiones; Introduction The construction of nitrogen-containing

• structure unambiguously, as a representative example, the structure of 6aa was also confirmed by single crystal X-ray diffraction (XRD) studies after crystallization from ethyl acetate/hexane (Figure 2). CCDC 1991859 (for 6aa) contains the supplementary crystallographic data for this paper. These data are

Highly selective Diels–Alder and Heck arylation reactions in a divergent synthesis of isoindolo- and pyrrolo-fused polycyclic indoles from 2-formylpyrrole

• Carlos H. Escalante,
• Eder I. Martínez-Mora,
• Carlos Espinoza-Hicks,
• Alejandro A. Camacho-Dávila,
• Fernando R. Ramos-Morales,
• Francisco Delgado and
• Joaquín Tamariz

Beilstein J. Org. Chem. 2020, 16, 1320–1334, doi:10.3762/bjoc.16.113

• natural pyrrolizine- and isoindole-containing alkaloids. Structures of 9m (a) and 10m (b) as determined by single-crystal X-ray diffraction crystallography (ellipsoids at the 30% probability level). M06-2X/6-31+G(d,p) Optimized geometry for each of the SCs (a and d), TSs (b and e) and ADs (c and f) of the

• isomer 10m, the irradiation of the singlet of the methyl group of the C-4 acetyl group increased the size of the signals of the protons H-3a and H-8b, which are located on the same side as the acetyl group. The unambiguous assignment of their structures was accomplished by a single-crystal X-ray

• diffraction crystallography of both endo 9m and exo 10m adducts (Figure 2) [43]. In addition, the thermal cycloadditions of 2-vinylpyrroles 8a–j and maleimides 7b,c took place satisfactorily to deliver the expected adducts 9e–p/10e–p, also with high endo diastereoselectivity and good yields (Table 2, entries

Ferrocenyl-substituted tetrahydrothiophenes via formal [3 + 2]-cycloaddition reactions of ferrocenyl thioketones with donor–acceptor cyclopropanes

• Grzegorz Mlostoń,
• Mateusz Kowalczyk,
• André U. Augustin,
• Peter G. Jones and
• Daniel B. Werz

Beilstein J. Org. Chem. 2020, 16, 1288–1295, doi:10.3762/bjoc.16.109

• were formed with complete diastereoselectivity, leading to a single isomer. In order to establish the structure of the isomers, a single crystal obtained for compound 9c was studied by X-ray diffraction analysis which showed, that the Ph(C-2) group and Fc(C-5) substituent were mutually cis-oriented

• the slightly more polar one was isolated and identified as the minor isomer of 9d. In the course of crystallization from hexane the less polar fraction gave single crystals suitable for the X-ray diffraction analysis, which unambiguously confirmed that in this molecule the Ph(C-5) and Fc(C-2) groups

Synthesis, antiinflammatory activity, and molecular docking studies of bisphosphonic esters as potential MMP-8 and MMP-9 inhibitors

• Abimelek Cortes-Pacheco,
• María Adelina Jiménez-Arellanes,
• Francisco José Palacios-Can,
• José Antonio Valcarcel-Gamiño,
• Rodrigo Said Razo-Hernández,
• María del Carmen Juárez-Vázquez,
• Adolfo López-Torres and
• Oscar Abelardo Ramírez-Marroquín

Beilstein J. Org. Chem. 2020, 16, 1277–1287, doi:10.3762/bjoc.16.108

• , angiogenesis, and metastasis in cancer [12][13][14][15], pointing at bisphosphonates as potential treatments for cancer and other inflammation-related diseases. In this respect, MMP inhibition by phosphonates or bisphosphonates has been previously studied through computational or X-ray diffraction analyses to

• are well known. For example, the coordination of the P=O oxygen atom in bisphosphonates with a zinc cation in the catalytic site of the MMPs has been characterized, both through X-ray diffraction and molecular docking studies [11][36][37]. Consequently, we propose MMP-8 and MMP-9 as potential

Oxime radicals: generation, properties and application in organic synthesis

• Igor B. Krylov,
• Stanislav A. Paveliev,
• Alexander S. Budnikov and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2020, 16, 1234–1276, doi:10.3762/bjoc.16.107

• C-centered radical 125 by TBN [130]. Intermediate 127 was isolated in 96% yield and its structure was confirmed by a single-crystal X-ray diffraction. Under the action of Et3N, the dimeric nitroso compound 127 was converted into the more stable oxime tautomeric form 123a (Scheme 41). Another

Activated carbon as catalyst support: precursors, preparation, modification and characterization

• Melanie Iwanow,
• Tobias Gärtner,
• Volker Sieber and
• Burkhard König

Beilstein J. Org. Chem. 2020, 16, 1188–1202, doi:10.3762/bjoc.16.104

• phosphorous species in the carbons could be responsible for the examined difference [130]. X-ray diffraction (XRD): X-ray diffraction gives information on the crystallinity or amorphicity of activated carbons. Comparison of resulting XRD patterns with the crystallographic databases clarify that partially