Linker, loading, and reaction scale influence automated glycan assembly

• Marlene C. S. Dal Colle,
• Manuel G. Ricardo,
• Nives Hribernik,
• José Danglad-Flores,
• Peter H. Seeberger and
• Martina Delbianco

Beilstein J. Org. Chem. 2023, 19, 1015–1020, doi:10.3762/bjoc.19.77

• light (λ = 360 nm), L1 releases the glycan equipped with an aminoalkyl spacer at the reducing end, whereas L2 affords the free reducing sugar (α/β mixture). Previous data suggested that UV cleavage of L1 and L2 was equally efficient, permitting the isolation of a tetramannoside in around 60% yield [3

Five new sesquiterpenoids from agarwood of Aquilaria sinensis

• Hong Zhou,
• Xu-Yang Li,
• Hong-Bin Fang,
• He-Zhong Jiang and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 998–1007, doi:10.3762/bjoc.19.75

• deep insight into novel molecules with effective bioactivities from agarwood. Therefore, the continued study of Aquilaria sinensis has led to the isolation of ten sesquiterpenoids, including five new eudesmane-type sesquiterpenoids (Figure 1). Herein, we describe the isolation, structural elucidation

• , Shenzhen University, P.R. China. Extraction and isolation The dried and powdered agarwood sample (15.0 kg) was extracted by percolating with 95% EtOH to afford a crude extract, which was suspended in water followed by partition with EtOAc to afford an EtOAc-soluble extract (1.7 kg). The EtOAc extract was

Synthesis of tetrahydrofuro[3,2-c]pyridines via Pictet–Spengler reaction

• Elena Y. Mendogralo and
• Maxim G. Uchuskin

Beilstein J. Org. Chem. 2023, 19, 991–997, doi:10.3762/bjoc.19.74

• . In most cases, we observed the abundant tarring of the reaction mixture and we could not achieve the full conversion of the starting tetrahydrofuro[3,2-c]pyridine 4a in any experiment. The best results were achieved when HCl in 1,4-dioxane was used (Scheme 3). However, upon isolation and purification

• , without isolation of the intermediate 3-(2-oxopropyl)piperidin-4-one 5a, the reaction mixture after acid hydrolysis was treated with aniline and the desired tetrahydro-1H-pyrrolo[3,2-с]pyridine 6а was isolated in 19% yield only (Scheme 4). Finally, we studied some reactions of the obtained tetrahydrofuro

Clauson–Kaas pyrrole synthesis using diverse catalysts: a transition from conventional to greener approach

• Dileep Kumar Singh and
• Rajesh Kumar

Beilstein J. Org. Chem. 2023, 19, 928–955, doi:10.3762/bjoc.19.71

• amines 50 were reacted with 2,5-DMTHF (2) in 5 mol % Bi(NO3)3·5H2O in solvent-free conditions under ultrasound irradiation at room temperature. The main advantages of this procedure are its simple isolation process, excellent product yield without using expensive or sensitive solvents and reagents

• °C (Scheme 35). This solvent-free protocol has many advantages, including better selectivity and excellent product yields, mild reaction conditions, and ease of product isolation. (iii) Microwave-assisted reactions under organic solvents: Silveira and co-workers [90] developed the Clauson–Kaas

Intermediates and shunt products of massiliachelin biosynthesis in Massilia sp. NR 4-1

• Till Steinmetz,
• Blaise Kimbadi Lombe and
• Markus Nett

Beilstein J. Org. Chem. 2023, 19, 909–917, doi:10.3762/bjoc.19.69

• -chelating molecules, which are structurally and likely also biosynthetically linked to massiliachelin. However, these compounds are not related to the predicted lipopeptide siderophore. Herein, we describe their isolation, characterization and antibacterial activities, and we discuss their biosynthetic

• (Supporting Information File 1, Figure S1). In the absence of sodium pyruvate, the identification and isolation of minor metabolites from Massilia sp. NR 4-1 is facilitated, as already observed in the discovery of massinidine [17]. In the present study, several batch fermentations with a total culture volume

• a second reversed-phase HPLC run. This led to the isolation of six compounds (1–6, Figure 2). The NMR spectroscopic data of compound 1 (brownish oil, 1.7 mg) were found to be very similar to those of the previously reported massiliachelin [18], suggesting a structural relatedness. The empirical

Synthesis of aliphatic nitriles from cyclobutanone oxime mediated by sulfuryl fluoride (SO₂F₂)

• Xian-Lin Chen and
• Hua-Li Qin

Beilstein J. Org. Chem. 2023, 19, 901–908, doi:10.3762/bjoc.19.68

• the [Cun] catalyst and intermediate V. The critical β-H elimination step occurs smoothly in the presence of excessive base to generate the final nitrile product. Due to the high reactivity of the intermediate fluorosulfonate I, the attempt of isolation or detecting the in situ generated intermediate I

Asymmetric tandem conjugate addition and reaction with carbocations on acylimidazole Michael acceptors

• Brigita Mudráková,
• Renata Marcia de Figueiredo,
• Jean-Marc Campagne and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 881–888, doi:10.3762/bjoc.19.65

• charges at C-2 of enolates cannot account for the differences in the yields of the trapping products as these are affected by their specific stabilities and issues during isolation and purification. As an additional question that we tried to answer with these calculations was the comparison of the Zn

Eschenmoser coupling reactions starting from primary thioamides. When do they work and when not?

• Lukáš Marek,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2023, 19, 808–819, doi:10.3762/bjoc.19.61

• , whose isolation in the pure state failed. Comparable results were obtained in DCM at 25 °C with KHCO3 (Table 1, entry 13) but with TEA (Table 1, entry 14) only moderate yields of 8a and 9a were obtained. To generalize the results obtained with thiobenzamide, the reaction of 2b with thioacetamide was

• -bromoisoquinoline-1,3(2H,4H)-dione (3) with a yield of 65%. Its reaction with thiobenzamide and thioacetamide in DMF was carried out without isolation of the intermediary thioiminium salts 10a and 10b and only gave the ECR products 11a,b (Scheme 5) in good yield (75 and 78%, respectively). No thiazole (cf

• . reactions of compound 2b) formation was observed. An even better yield of ECR (11c, 91%) was achieved with thiobenzanilide, again without isolation of the intermediary salt 10c. The presence of any base or thiophile had no positive effect on the course of the reaction. Simplification of a structure of

Non-peptide compounds from Kronopolites svenhedini (Verhoeff) and their antitumor and iNOS inhibitory activities

• Yuan-Nan Yuan,
• Jin-Qiang Li,
• Hong-Bin Fang,
• Shao-Jun Xing,
• Yong-Ming Yan and
• Yong-Xian Cheng

Beilstein J. Org. Chem. 2023, 19, 789–799, doi:10.3762/bjoc.19.59

• -peptide small molecules, leading to the isolation of six new and three known compounds (Figure 1) from its extract. These structures were determined by 1D and 2D NMR spectra and the experimental and calculated electronic circular dichroism (ECD) spectra. The six new compounds have been named kronopoone A

• Science Center, Shenzhen University, PR China. Extraction and isolation The dried and powdered bodies of Kronopolites svenhedini (Verhoeff) (49 kg) were extracted using 50% EtOH (4 × 120 L, 24 h each time) to yield a crude extract. This extract (5.2 kg) was partitioned into six fractions (Fr. A–Fr. F

Sulfate radical anion-induced benzylic oxidation of N-(arylsulfonyl)benzylamines to N-arylsulfonylimines

• Joydev K. Laha,
• Pankaj Gupta and
• Amitava Hazra

Beilstein J. Org. Chem. 2023, 19, 771–777, doi:10.3762/bjoc.19.57

• with ortho-substituted anilines is also reported. The key features of the protocol include the use of a green oxidant, a short reaction time (30 min), chromatography-free isolation, scalability, and economical, delivering N-arylsulfonylimines in excellent yields of up to 96%. While the oxidation of N

• nucleophilic addition and as a result the corresponding cyclized product is not formed. The synthesis of these nitrogen heterocycles signifies the innate ability of in situ-generated N-arylsulfonylimines in a variety of reactions with various ortho-substituted anilines without the need for pre-isolation or

• -substituted anilines. The key features including the use of a green oxidant, a short reaction time, chromatography-free isolation, and scalability mark a distinction from the contemporary methods. Although we propose a dual role for SO4·− involving both hydrogen atom abstraction (HAT) and single electron

Synthesis of imidazo[1,2-a]pyridine-containing peptidomimetics by tandem of Groebke–Blackburn–Bienaymé and Ugi reactions

• Oleksandr V. Kolomiiets,
• Alexander V. Tsygankov,
• Maryna N. Kornet,
• Aleksander A. Brazhko,
• Vladimir I. Musatov and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2023, 19, 727–735, doi:10.3762/bjoc.19.53

• . Without isolation, the corresponding aldehyde, amine and isocyanide were added to the resulting iminopyridine product and the mixture was then stirred at room temperature for 12 h. But again, the expected compounds could not be obtained. Following this trend and based on published data, we synthesized

Photocatalytic sequential C–H functionalization expediting acetoxymalonylation of imidazo heterocycles

• Deepak Singh,
• Shyamal Pramanik and
• Soumitra Maity

Beilstein J. Org. Chem. 2023, 19, 666–673, doi:10.3762/bjoc.19.48

• reaction was carried out between 1a and 2a in dry CH3CN as solvent under N2 atmosphere using 4CzIPN as the photocatalyst. Irradiating the reaction mixture for 10 h under blue LEDs (450 nm) led to the isolation of products 5 (54%) and 6 (28%) (Table 1, entry 1). However, the same reaction, under aerobic

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• resulted in the isolation of one new cassane diterpenoid, 14β-hydroxycassa-11(12),13(15)-dien-12,16-olide (1), one new caged cassane diterpenoid dimer featuring a 6/6/6/6/6/5/6/6/6 nonacyclic ring system, 6′-acetoxypterolobirin B (3), and one known compound (Figure 1). Results and Discussion The fruits of

• °16'51.5"N 100°43'30.3"E) in August 2021 and identified by Mr. Martin van de Bult, Doi Tung Development Project. A voucher specimen (UP-CNP003) was deposited at the Chemistry of Natural Products for Sustainability Laboratory, School of Science, University of Phayao. Extraction and isolation The fresh

Nucleophile-induced ring contraction in pyrrolo[2,1-c][1,4]benzothiazines: access to pyrrolo[2,1-b][1,3]benzothiazoles

• Ekaterina A. Lystsova,
• Maksim V. Dmitriev,
• Andrey N. Maslivets and
• Ekaterina E. Khramtsova

Beilstein J. Org. Chem. 2023, 19, 646–657, doi:10.3762/bjoc.19.46

• conditions (Table 2) of the model reaction of APBTT 1a and benzylamine were optimized. The best yield of PBTA 7a was observed when acetonitrile was used as the solvent and heated at 85 °C for 3 h (entry 2, Table 2). Since the product 7a isolation procedure proceeded more conveniently in toluene (the product

• 12aa isolation procedure proceeded more conveniently in toluene, we chose these conditions (entry 7, Table 3) as a standard for further reactions. As in the cases of the above studied reactions (Scheme 7, Scheme 12), we had to derivatize the product 12aa (Scheme 17) by an earlier procedure developed by

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• , crop-protecting agents, or advanced materials. Their syntheses often involve numerous reaction steps requiring laborious isolation and intermediate product purification steps. An important strategy for improving syntheses’ effectiveness is the concept of domino reactions, cascade, or tandem reactions

• been shown to impart high levels of enantioselectivity for these ketones [46]. We performed the conjugate addition for 2 h and then added imine 58 having a tosyl protecting group. The workup allowed the isolation of domino products 59 as a mixture of diastereomers with dr 3:2 and enantiomeric purities

C3-Alkylation of furfural derivatives by continuous flow homogeneous catalysis

• Grédy Kiala Kinkutu,
• Catherine Louis,
• Myriam Roy,
• Juliette Blanchard and
• Julie Oble

Beilstein J. Org. Chem. 2023, 19, 582–592, doi:10.3762/bjoc.19.43

• reaction with formation of ruthenium aggregates and mononuclear Ru(0) catalyst. A) Isolation test of a reaction intermediate; B) XPS and TEM (in ethanol) of the recovered solid phase: showing the presence of Ru aggregates. Ruthenium aggregate-catalyzed alkylation reaction. Scope of continuous flow furfural

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• complex. Solubility of the t-Bu-containing ligand and its Schiff base complexes is increased, facilitating scaling-up the reaction procedure and isolation of the functionalized amino acid. Keywords: asymmetric synthesis; chiral auxiliaries; cysteine derivatives; Ni–Schiff base complexes; voltammetry

• controlled stereoselectivity. Finally, the solubility of the t-Bu-containing ligand and its Schiff base complexes is increased, facilitating scaling-up the reaction procedure and isolation of the functionalized amino acid. We hope that the chiral templates derived from the easily available and inexpensive

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• the unsymmetrically methyl-substituted bicyclic alkene producing a single regioisomer 55a. The authors noted the aminoborylated products bearing a BPin moiety were not always stable upon isolation, so they were either converted into the more stable Bdan (dan = 1,8-diaminonaphthalenyl) or Bpin-Bdan was

Total synthesis: an enabling science

• Bastien Nay

Beilstein J. Org. Chem. 2023, 19, 474–476, doi:10.3762/bjoc.19.36

• synthetic methodology developments and to natural product isolation or biosynthesis. Thus, thematic issues dealing with total synthesis in the Beilstein Journal of Organic Chemistry have naturally been published in these fields, such as "Transition-metal and organocatalysis in natural product synthesis

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• ; macrocycles; Introduction Conceptually, cyclic molecules containing more than 12 covalently connected atoms are called macrocycles and this class comprises several structurally distinct compounds [1]. Due to their structural characteristics and their different biological activities, the isolation of new

• characterized as an oxa[1.7]meta-paracyclophane framework. In the literature we can find reports about the isolation/synthesis of combretastatins D and their analogues which showed different biological activities, e.g., antineoplastic, anti-inflammatory, and α-glucosidase inhibition [13][14][15]. The presence

• compounds available in the literature, there is none which focuses only on combretastatins D and their isomers. Therefore, this review is divided into three main parts: the first comprises the isolation of these compounds from natural sources. In the following part, the biosynthetic pathway and the total

An efficient metal-free and catalyst-free C–S/C–O bond-formation strategy: synthesis of pyrazole-conjugated thioamides and amides

• Shubham Sharma,
• Dharmender Singh,
• Sunit Kumar,
• Vaishali,
• Rahul Jamra,
• Naveen Banyal,
• Deepika,
• Chandi C. Malakar and
• Virender Singh

Beilstein J. Org. Chem. 2023, 19, 231–244, doi:10.3762/bjoc.19.22

• product isolation procedures [58][59][60][61][62]. In the recent past, our group also reported two methods towards the exploration of elemental sulfur for the formation of a sulfur-containing framework; however, these methods suffer from some drawbacks such as lack of diversity in starting substrate, need

• elemental sulfur under metal and catalyst-free conditions. The salient features of the current protocol may be attributed to the broad substrate scope, commercially available secondary amines, operational simplicity, multicomponent character of the reaction, easy isolation of products, short reaction time

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• catalysis during compound isolations. The reporting of (–)-11, (+)-11 and 11 of unspecified absolute configuration all under the same CAS number (473-04-1) adds to the confusion. Moreover, one report is available that mentions the isolation of 11 from Atractylodes macrocephala [87]. For unclear reason, this

• compound for which the situation in the literature is very confusing. There is no paper available describing the isolation and structure elucidation of a compound with the structure of 50, and the first published paper that can be found under the CAS number of 50 (869998-21-0) does not mention this

• assignments and even error propagation, and shows the importance of structure elucidation by classical methods, i.e., isolation and compound characterisation by NMR spectroscopy and determination of optical rotation. Compound 51 can be generated biosynthetically from I3a through 1,2-methyl migration to I3b

Sequential hydrozirconation/Pd-catalyzed cross coupling of acyl chlorides towards conjugated (2E,4E)-dienones

• Benedikt Kolb,
• Daniela Silva dos Santos,
• Sanja Krause,
• Anna Zens and
• Sabine Laschat

Beilstein J. Org. Chem. 2023, 19, 176–185, doi:10.3762/bjoc.19.17

• -butyllithium and 5 equiv of alkyl iodide led to isolation of the alkyl-substituted compounds 25g–j with up to 54% yield. The reaction of 29a and 29f with TBAF·H2O gave bromoenynes 25m in 13% and 25n in 52% yield. Deprotonation of 25a and 25f with n-butyllithium and reaction with ethyl chloroformate yielded 25k

Identification and determination of the absolute configuration of amorph-4-en-10β-ol, a cadinol-type sesquiterpene from the scent glands of the African reed frog Hyperolius cinnamomeoventris

• Angelique Ladwig,
• Markus Kroll and
• Stefan Schulz

Beilstein J. Org. Chem. 2023, 19, 167–175, doi:10.3762/bjoc.19.16

• ) (for mass spectra see Supporting Information File 1). A minor diastereomer 14 was obtained in 9% yield after isolation by RP-HPLC using a LiChroPrep RP-18 phase because conventional column chromatography did not allow for good separation from the major products. Only one face of the carbonyl groups

• concept proved to be difficult to achieve, but by optimization of different parameters of this Domino reaction, the required enantiomerically almost pure ketones 9–11 were obtained (Table 1). The Mannich reaction worked best using diisopropylammonium trifluoroacetate as the catalyst [22]. The isolation of

• -enantiomers of amorph-4-en-10β-ol (14), δ-cadinol (12), epi-α-muurolol or τ-muurolol (21), α-cadinol (22), and 10-epi-α-cadinol or τ-cadinol (13), respectively. The isolation of product 14 proved unsuccessful due to the inseparability from the other cadinols. Nevertheless, with this material in hand, the

Nostochopcerol, a new antibacterial monoacylglycerol from the edible cyanobacterium Nostochopsis lobatus

• Naoya Oku,
• Saki Hayashi,
• Yuji Yamaguchi,
• Hiroyuki Takenaka and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2023, 19, 133–138, doi:10.3762/bjoc.19.13

• esterification. The resulting ester 2a or 2b was purified by reversed-phase HPLC and deprotected by a short treatment with 80% aqueous acetic acid at 58–59 °C to give 1-linoleoyl-sn-glycerol (3a) or 3-linoleoyl-sn-glycerol (3b), respectively (Scheme 1). Similarly, to our experience during the isolation of

• on a Bruker micrOTOF mass spectrometer. Optical rotation and UV spectra were recorded on a JASCO P-1030 polarimeter and a Shimadzu UV-1800 spectrophotometer, respectively. Biological material N. lobatus MAC0804NAN was cultured as described in [13]. Extraction and isolation A water-thawed specimen