Synthesis of imidazo[1,2-a]pyridine-containing peptidomimetics by tandem of Groebke–Blackburn–Bienaymé and Ugi reactions

• Oleksandr V. Kolomiiets,
• Alexander V. Tsygankov,
• Maryna N. Kornet,
• Aleksander A. Brazhko,
• Vladimir I. Musatov and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2023, 19, 727–735, doi:10.3762/bjoc.19.53

• , Zaporizhzhya National University, Zhukovsky str., 66, Zaporizhzhya, 69600, Ukraine 10.3762/bjoc.19.53 Abstract Peptidomimetics with a substituted imidazo[1,2-a]pyridine fragment were synthesized by a tandem of Groebke–Blackburn–Bienaymé and Ugi reactions. The target products contain substituted imidazo[1,2-a

• ]pyridine and peptidomimetic moieties as pharmacophores with four diversity points introduced from readily available starting materials, including scaffold diversity. A small focused compound library of 20 Ugi products was prepared and screened for antibacterial activity. Keywords: Groebke–Blackburn

• –Bienaymé reaction; imidazo[1,2-a]pyridine; isocyanide; multicomponent reaction; peptidomimetic; Ugi reaction; Introduction The use of isocyanide multicomponent reactions (IMCR) to prepare biologically active compounds is one of the most promising tools in modern organic and medicinal chemistry. Therefore

Photocatalytic sequential C–H functionalization expediting acetoxymalonylation of imidazo heterocycles

• Deepak Singh,
• Shyamal Pramanik and
• Soumitra Maity

Beilstein J. Org. Chem. 2023, 19, 666–673, doi:10.3762/bjoc.19.48

• triple role as activator of IPs, halide scavenger, and acetylating agent. Results and Discussion Optimization In the quest for the optimal reaction conditions, we started our investigations with 2-phenylimidazo[1,2-a]pyridine (1a) and diethyl bromomalonate (2a) as model substrates. Initially, the

• diverse electronic properties were present in the pyridine ring of the IP moieties (4l–q). With substrates having a methyl substitution at C-7 and C-8 of the pyridine ring, the yields and regioselectivity were still excellent (4l and 4m), but reduced significantly upon introducing a halogen group onto the

• pyridine ring. Except for the 6-bromo-substituted compound (4o), all other substrates having a halogen substituent in the pyridine ring showed reduced yields (4n, and 4p,q). The number of substituents also seemed to negatively affect the yield, as observed for products 4p and 4q, featuring two substituents

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• (phosphite/phosphine-pyridine amide, phosphine-sulfoxide, phosphoramidite, MINBOL, see Figure 1) and they usually showed excellent diastereoselectivity (dr >20:1). The catalytic systems even with low catalyst loadings tolerated both electron-donating and withdrawing groups on the aromatic substituents

• functional group tolerance with excellent stereoselectivities. In 2016, Ellman and co-workers demonstrated a Rh- or Co-catalyzed highly diastereoselective tandem C–H bond addition/aldol reaction sequence [96][97]. The C–H activation was promoted by pyridine, pyrazole, or imine directing groups, while the

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• -catalyzed [3 + 2] annulation/ring-opening/dehydration domino reaction of oxabicyclic alkenes 30 with 2-(1-methylhydrazinyl)pyridine (MHP) directed arenes 87 for the synthesis of benzo[b]fluorenones 88 (Scheme 16) [52]. C–H bond functionalization with heterobicyclic alkenes as annulation partners has

• C–H activation as well as its involvement in the dehydration process. This reaction proceeded smoothly with a variety of both EWGs and EDGs on the 2-phenylpyridine. Interestingly, when swapping the pyridine directing group for thiophene or furan, yields were improved although quinolinyl and

Transition-metal-catalyzed C–H bond activation as a sustainable strategy for the synthesis of fluorinated molecules: an overview

• Louis Monsigny,
• Floriane Doche and
• Tatiana Besset

Beilstein J. Org. Chem. 2023, 19, 448–473, doi:10.3762/bjoc.19.35

• , up to 91% yield) [119]. 2-Arylpyridine derivatives bearing electron-donating groups, electron-withdrawing groups or halogen at the para- and meta-positions of the aromatic ring were readily functionalized (11a–g, 58–85% yields). Also 2-(2-methoxyphenyl)pyridine (11h) and 2-(2-naphthyl)pyridine (11i

• methyl, methoxy or methylthio groups (17b–d) or by halogen (17e) was achieved (Scheme 8, up to 77% yield). Note that in case of disubstituted 2-(4-ethoxy-3-fluorophenyl)pyridine (17h), the expected product 18h was isolated in 31% yield. Moreover, selective oxidation of the SCF3 residue into the

• derivatives using AgSCF3 (Scheme 11) [124]. This methodology allowed the functionalization of several aromatic compounds bearing a pyridine or a pyrimidine as a directing group (20 examples, up to 65% yield). The reaction proceeded smoothly with substrates bearing an electron-donating group (25b,c), halogen

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• potassium carbonate or methylcopper in pyridine led to compound 116 in only 10% yield. The cleavage of the benzyl ether proved to be complicated, as TFA also opened the lactone at the ester group (Scheme 24) [55]. In an attempt to circumvent these problems, the authors chose to use isovanillin (80) as

• macrocyclization using SO3·pyridine [68] gave the corresponding thioether 151, which was oxidized to the cyclic sulfone 152 using m-CPBA. Extrusion of SO2 by FVP followed by demethylation of the formed macrolide furnished the compound 154 which can be converted in combretastatin D-1 (1) by known methodologies [43

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• hydroboration of imines [87][92][97], nitriles [92][98][99][100][101], carbodiimides [92][100][102], pyridine [92], and isocyanides [92] with HBpin (Scheme 23). These generally follow a similar proposed catalytic cycle; aluminium-mediated reduction, followed by Al‒N/B‒H exchange with HBpin (Scheme 23). The

Continuous flow synthesis of 6-monoamino-6-monodeoxy-β-cyclodextrin

• János Máté Orosz,
• Dóra Ujj,
• Petr Kasal,
• Gábor Benkovics and
• Erika Bálint

Beilstein J. Org. Chem. 2023, 19, 294–302, doi:10.3762/bjoc.19.25

• easier process than the optimization of a new monosubstitution reaction on a native CD [5]. Monotosylation of the primary rim of CDs is the most widely used method to obtain C-6 monofunctionalized CDs. Tosyl chloride (TsCl) reacts with α-, β-, and γ-CD in pyridine to give the C-6-monosubstituted product

• in about 30% yield (for β-CD) [6][7]. The C-6 regioselectivity can be attributed to the inclusion of pyridine into the CD cavity in such a way that it activates only the hydroxy groups on the primary side. Several alternative methods have been developed with the aim of further improving the yield of

• monotosylation or replacing pyridine with a more user-friendly solvent [8]. Regardless of which strategy is used, the complete conversion of the starting material into the monosubstituted product does not occur, and a mixture of overtosylated products and unreacted starting CD is formed. The target

Synthesis, α-mannosidase inhibition studies and molecular modeling of 1,4-imino-ᴅ-lyxitols and their C-5-altered N-arylalkyl derivatives

• Martin Kalník,
• Sergej Šesták,
• Juraj Kóňa,
• Maroš Bella and
• Monika Poláková

Beilstein J. Org. Chem. 2023, 19, 282–293, doi:10.3762/bjoc.19.24

• conditions: (a) Tf2O, pyridine, CH2Cl2, 0 °C, 1.5 h, 64%; (b) 10% aq NaOH, EtOH, reflux, 24 h, 67%; (c) ArCH2Br, K2CO3, DMF, 0 °C–rt, overnight; (d) 20% HCl, MeOH, rt, 72 h; (e) H2, Pd/C, MeOH, rt, 5 h, then, conc. HCl, 0 °C, 86%. Inhibition (IC50, Ki values and selectivity index, SI) of class II GH38 α

An efficient metal-free and catalyst-free C–S/C–O bond-formation strategy: synthesis of pyrazole-conjugated thioamides and amides

• Shubham Sharma,
• Dharmender Singh,
• Sunit Kumar,
• Vaishali,
• Rahul Jamra,
• Naveen Banyal,
• Deepika,
• Chandi C. Malakar and
• Virender Singh

Beilstein J. Org. Chem. 2023, 19, 231–244, doi:10.3762/bjoc.19.22

• -tethered thioamides inspired us to generate analogous pyrazole-pyridine conjugates having an amide linkage. For this purpose, 5-(4-fluorophenyl)-1-phenyl-1H-pyrazole-3-carbaldehyde (1) and 2-aminopyridine (F) were selected as the model reactants to explore this transformation. Initially, we conducted an

• (entry 16, Table 2). From the above screening experiments, it was concluded that 10.0 equiv of hydrogen peroxide in THF at 70 °C proved to be the optimal conditions for the construction of the pyrazole-pyridine conjugate with an amide linkage (entry 16, Table 2). Having the optimized conditions in hand

• -aminopyridine. Thereafter, a nucleophilic attack of H2O2 on the imine carbon may afford the intermediate 17. Finally, the loss of a water molecule from the intermediate 17 may generate the pyrazole-pyridine conjugate with amide linkage 1F. Conclusion In summary, a simple, straightforward and efficient approach

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• structure was subsequently secured by preparation from 1 through Cope rearrangement [20] and through dehydration of elemol (7) with POCl3 in pyridine yielding 5 and β-elemene (8) (Scheme 3D) [45]. Compound 5 has also frequently been reported from natural sources especially after heat treatment of the sample

Revisiting the bromination of 3β-hydroxycholest-5-ene with CBr₄/PPh₃ and the subsequent azidolysis of the resulting bromide, disparity in stereochemical behavior

• Christian Schumacher,
• Jas S. Ward,
• Kari Rissanen,
• Carsten Bolm and
• Mohamed Ramadan El Sayed Aly

Beilstein J. Org. Chem. 2023, 19, 91–99, doi:10.3762/bjoc.19.9

• retention of configuration at C3 [17]. In 2008, a direct dehydroxyazidation of cholesterol by treatment of the steroid with a zinc azide–pyridine complex, diisopropyl azodicarboxylate (DIAD), and PPh3 was described [18]. This Mitsunobu-like reaction occurred with complete inversion at C3 to afford 3α

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• substantial decrease of the product yield. FGI, followed by methylenation provided the common scaffold 88. Further elaboration of 88 to natural products 90 and 89 was accomplished by UV irradiation at 365 nm in MeOH and by utilizing singlet oxygen (using rose Bengal) in MeCN/pyridine, 40:1, respectively

Total synthesis of grayanane natural products

• Nicolas Fay,
• Rémi Blieck,
• Cyrille Kouklovsky and
• Aurélien de la Torre

Beilstein J. Org. Chem. 2022, 18, 1707–1719, doi:10.3762/bjoc.18.181

• corresponding ketone was achieved using Dess–Martin periodinane with a pyridine buffer. Addition of Me3SiCH2Li efficiently afforded the Peterson adduct 33. The 1,1-disubtituted alkene was then submitted to Mukaiyma hydration to form the tertiary alcohol, in presence of Mn(dpm)3, PhSiH3 and O2. Then, the ketone

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• [74][76][80][86][87][88]. To facilitate the anodic oxidation of N-hydroxyphthalimide, basic pyridine derivatives are used as the N-hydroxyphthalimide proton acceptors [87]. In many cases electrolysis can be performed in the galvanostatic mode in a simple undivided cell, which is convenient for

• application scope, robustness, and selectivity [74]. Recently, an electrochemical NHPI/PINO-mediated benzylic iodination was achieved using lutidine or 2,6-di-tert-butylpyridine as bases with low nucleophilicity [89] (Scheme 10). When pyridine was used instead 2,6-disubstituted pyridines its N-benzylation by

• -oxyl (ACT) allows for the oxidation of alcohols and aldehydes to carboxylic acids by controlled potential electrolysis, while maintaining the stereocenter configuration in the R-substituent [102] (Scheme 14). The method is also suitable for molecules with chelating pyridine moieties. An outstanding

A new route for the synthesis of 1-deazaguanine and 1-deazahypoxanthine

• Raphael Bereiter,
• Marco Oberlechner and
• Ronald Micura

Beilstein J. Org. Chem. 2022, 18, 1617–1624, doi:10.3762/bjoc.18.172

• dicarbonate (Boc2O, 888.89 mg, 4.07 mmol), 4-(dimethylamino)pyridine (DMAP, 35 mg, 0.29 mmol) and triethylamine (NEt3, 589 mg, 811 µL, 5.82 mmol) were added and the clear solution was stirred for one hour at room temperature. The mixture was subsequently quenched with saturated ammonium chloride solution

• of 1-deazaguanine (11) described by Markees and Kidder in 1956 [18]. Synthesis of 1-deazaguanine (11) described by Gorton and Shive in 1957 [19]. Six-step synthesis of 1-deazaguanine (11). Abbreviations: p-toluenesulfonic acid (TsOH), 4-(dimethylamino)pyridine (DMAP), trifluoroacetic anhydride (TFAA

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• according to the published procedure (Scheme 1) [26] with some modifications to achieve better results. We started with silylation of 6-azido-β-CD, using imidazole/DMF base/solvent mixture instead of pyridine, which gave higher yields and lower reaction time. Also, we found the recrystallization from the

Functionalization of imidazole N-oxide: a recent discovery in organic transformations

• Koustav Singha,
• Imran Habib and
• Mossaraf Hossain

Beilstein J. Org. Chem. 2022, 18, 1575–1588, doi:10.3762/bjoc.18.168

• fluoroborate complexes of the N-oxides O-acylated by TsHal and the cine-substitution occurs with the help of a halogen group releasing the tosyl group. Here, 1.0 equiv 2-unsubstituted imidazole N-oxides were refluxed with 1.0 equiv TsHal in 1.0 equiv pyridine that played the role as both the base and the

• salts 41. The latter underwent deprotonation in the presence of triethylamine in pyridine to generate the carbene intermediates 42 (Scheme 9). After that, the optically active imidazole-2-thiones 43 were obtained through the reaction with elemental sulfur. In CHCl3 solutions, the study of the optical

• rotation of the isolated products 43a–h did not show any racemization under the standard reaction conditions. Thereafter, imidazolium salts 45a–d, obtained from imidazole N-oxides 44a–d, provided the desired optically active 3-butoxyimidazole-2-thiones 47a–d in 66–83% yield using triethylamine in pyridine

Efficient synthesis of aziridinecyclooctanediol and 3-aminocyclooctanetriol

• Emine Salamci and
• Ayse Kilic Lafzi

Beilstein J. Org. Chem. 2022, 18, 1539–1543, doi:10.3762/bjoc.18.163

• )cyclooctene 6 in 70% yield (Scheme 1). Oxidation of the dibenzylated compound 6 with OsO4/NMO provided the corresponding diol 7 in 90% yield. The exact configuration of 7 was confirmed by 1H and 2D NMR spectroscopic data. Next, mesylation of the hydroxy groups in 7 with MsCl in pyridine yielded dimesylate 8

Synthesis of the biologically important dideuterium-labelled adenosine triphosphate analogue ApppI(d₂)

• Petri A. Turhanen

Beilstein J. Org. Chem. 2022, 18, 1466–1470, doi:10.3762/bjoc.18.153

• mL), and distilled pyridine (375 µL, 368 mg, 4.7 mmol) and tosyl chloride (900 mg, 4.7 mmol) were added. Then, the reaction mixture was stirred for 4 h at room temperature before being evaporated to dryness in vacuum. The residue was dissolved in diethyl ether, filtered, and evaporated to dryness in

Oxa-Michael-initiated cascade reactions of levoglucosenone

• Julian Klepp,
• Thomas Bousfield,
• Hugh Cummins,
• Sarah V. A.-M. Legendre,
• Jason E. Camp and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2022, 18, 1457–1462, doi:10.3762/bjoc.18.151

• yields (Table 1, entries 5 and 7). Electron-poor aromatic aldehydes including 3-nitrobenzaldehyde and 3-pyridine carboxaldehyde also afforded good yields of the expected products 5g and 5j (Table 1, entries 10 and 13). The reaction of 5-methylfurfural afforded a low yield of 7, and the aldol condensation

Dienophilic reactivity of 2-phosphaindolizines: a conceptual DFT investigation

• Nosheen Beig,
• Aarti Peswani and
• Raj Kumar Bansal

Beilstein J. Org. Chem. 2022, 18, 1217–1224, doi:10.3762/bjoc.18.127

• Nosheen Beig Aarti Peswani Raj Kumar Bansal Department of Chemistry, The IIS (Deemed to be University), Jaipur 302020, India 10.3762/bjoc.18.127 Abstract The >C=P– or –N=P– functionality in 1,3-azaphospholo[1,5-a]pyridine, named as 2-phosphaindolizine and its 1- and 3-aza derivatives act as

• ; Fukui function; global hardness; nucleophilicity index; 2-phosphaindolizines; Introduction In 1988, we developed a simple synthetic method for the synthesis of 1,3-azaphospholo[1,5-a]pyridine derivative (1, R1 = Me, R2 = PhCO) from the reaction of 2-ethyl-1-phenacylpyridinium bromide with PCl3 and Et3N

• -diazaphospholo[1,2-a]pyridines, i.e., 1-aza-2-phosphaindolizines 3 [2], 1,2,3-diazaphospholo[1,5-a]pyridines, i.e., 3-aza-2-phosphaindolizines 4 [3], and 1,2,4,3-triazaphospholo[1,5-a]pyridine, i.e., 1,3-diaza-2-phosphaindolizine (5, Figure 2) [4]. We succeeded in developing another method involving a 1,5

Lewis acid-catalyzed Pudovik reaction–phospha-Brook rearrangement sequence to access phosphoric esters

• Jin Yang,
• Dang-Wei Qian and
• Shang-Dong Yang

Beilstein J. Org. Chem. 2022, 18, 1188–1194, doi:10.3762/bjoc.18.123

• yield (see 3ar–au). Next, we studied the scope with respect to the α-pyridinecarboxaldehyde by using 1a as the reaction partner (Scheme 3). Firstly, we investigated the effect of steric hindrance on the pyridine ring of the α-pyridinealdehyde. Under standard conditions, a methyl group was introduced at

• in moderate to good yield. Delightfully, in addition to aldehydes, a ketone was also applicable under standard conditions, albeit affording the product in a comparably lower yield, probably due to the lower reactivity and steric hindrance of the substrate (see 3bl). Moreover, pyridine bearing two

Thermally activated delayed fluorescence (TADF) emitters: sensing and boosting spin-flipping by aggregation

• Ashish Kumar Mazumdar,
• Gyana Prakash Nanda,
• Nisha Yadav,
• Upasana Deori,
• Upasha Acharyya,
• Bahadur Sk and
• Pachaiyappan Rajamalli

Beilstein J. Org. Chem. 2022, 18, 1177–1187, doi:10.3762/bjoc.18.122

• thermally activated delayed fluorescence (TADF) characteristics are emerging due to the potential applications in optoelectronic devices, time-resolved luminescence imaging, and solid-phase sensing. Herein, we synthesized two (4-bromobenzoyl)pyridine (BPy)-based donor–acceptor (D–A) compounds with varying

• beneficial for suppressing nonradiative deactivation channels, leading to aggregated- or solid-state emission properties. To this end, we chose tert-butylcarbazole (TC) and bulky tricarbazole (3C), respectively, as donor unit in combination with a (4-bromobenzoyl)pyridine (BPy) acceptor core to demonstrate

Synthesis, optical and electrochemical properties of (D–π)₂-type and (D–π)₂Ph-type fluorescent dyes

• Kosuke Takemura,
• Kazuki Ohira,
• Taiki Higashino,
• Keiichi Imato and
• Yousuke Ooyama

Beilstein J. Org. Chem. 2022, 18, 1047–1054, doi:10.3762/bjoc.18.106

• -based photoabsorption and fluorescence bands of OTK-2 appear in a shorter wavelength region than those of the corresponding (D–π)2A-type fluorescent dye having an azine ring (pyridine, pyrazine or triazine ring) as a substitute for the phenyl ring. However, the molar extinction coefficient (εmax) and