Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• as potential inhibitors of cathepsins. The phosphorus atom by default should mimic the tetrahedral intermediate, but this role may also be played by the hydroxy group present in hydroxyphosphonates, which mimic the carbonyl carbon in the peptide bond by forming a hydrogen bond with the amino group of

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• (Table 1, entry 11). These results indicate that the accessibility of the phosphorus center is important. Next, the solvent was investigated. Replacing acetonitrile with dimethyl sulfoxide (DMSO), or dimethylacetamide (DMA), or acetone, or ethyl acetate (EA), resulted in inferior yields (Table 1, entries

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• series of tri- and tetracoordinate phosphorus compounds using several basis sets and density functional theory (DFT) functionals gave a modest fit to experimental chemical shifts, but an excellent linear fit when plotted against the experimental values. The resultant scaling methods were then applied to

• best (mean absolute deviation/root mean square deviation (MAD/RMSD) = 6.9/8.5 ppm and 6.6/8.2 ppm, respectively), but for the full set of compounds gave higher deviations (MAD/RMSD = 8.2/12.3 ppm), and failed by over 60 ppm for a three-membered phosphorus heterocycle. Use of the M06-2X functional for

• /RMSD = 6.9/8.5 ppm and 6.8/9.1 ppm, respectively, over an experimental chemical shift range of −181 to 356 ppm. Due to the unexplained failures observed, we recommend use of more than one method when looking at novel structures. Keywords: calculations; DFT; phosphorus NMR; scaling methods

Comparison of crystal structure and DFT calculations of triferrocenyl trithiophosphite’s conformance

• Ruslan P. Shekurov,
• Mikhail N. Khrizanforov,
• Ilya A. Bezkishko,
• Tatiana P. Gerasimova,
• Almaz A. Zagidullin,
• Daut R. Islamov and
• Vasili A. Miluykov

Beilstein J. Org. Chem. 2022, 18, 1499–1504, doi:10.3762/bjoc.18.157

• orientations towards the phosphorus lone electron pair (LEP). A comparison of DFT calculations and X-ray diffraction data is presented, herein we show which conformations are preferred for a given ligand. Keywords: DFT calculations; multi-ferrocenyl compounds; phosphorus thioesters; trithiophosphite; X-ray

• phosphines, a relatively small number of trivalent phosphorus derivatives has been used to construct multiferrocene compounds. The use of ferrocene derivatives containing a phosphorus–sulfur bond is a promising direction, since coordination with a metal atom can occur both at the phosphorus and sulfur atoms

• [7]. It is important to know the conformational capabilities of such ligands for construction of such complexes [8][9][10][11]. However, to date, XRD data on phosphorus derivatives containing a ferrocenyl substituent at the sulfur atom are presented only in oxidized and sulfurized forms

Design, synthesis, and evaluation of chiral thiophosphorus acids as organocatalysts

• Karen R. Winters and
• Jean-Luc Montchamp

Beilstein J. Org. Chem. 2022, 18, 1471–1478, doi:10.3762/bjoc.18.154

• Karen R. Winters Jean-Luc Montchamp Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, Texas 76129, United States 10.3762/bjoc.18.154 Abstract A series of P-stereogenic chiral phosphorus acids (CPAs) were synthesized to determine the requirements for efficient

• the thiophosphorus acids was disappointing for this reaction, the work should be useful for developing structural design elements. Keywords: asymmetric; heterocycles; organocatalysis; phosphorus; synthesis; Introduction The importance of asymmetric organocatalysis was demonstrated by the 2021 Nobel

• Prize in Chemistry awarded to McMillan and List. A subclass of organocatalysts introduced independently by Akiyama and Terada in 2004 [1][2], are the C2-symmetrical chiral phosphorus acids (CPAs) initially derived from the BINOL scaffold, and later extended to other scaffolds such as VAPOL [3] and

Dissecting Mechanochemistry III

• Lars Borchardt and
• José G. Hernández

Beilstein J. Org. Chem. 2022, 18, 1454–1456, doi:10.3762/bjoc.18.150

• Margetić used dibrominated polycyclic imides as substrates to generate reactive alkenes, which could be trapped in situ by several dienes through Diels−Alder cycloadditions by ball milling (Scheme 3) [7]. Further, Moores and co-workers synthesized phosphorus-bridged heptazine-based carbon nitrides (g-h-PCN

1,4,6,10-Tetraazaadamantanes (TAADs) with N-amino groups: synthesis and formation of boron chelates and host–guest complexes

• Artem N. Semakin,
• Ivan S. Golovanov,
• Yulia V. Nelyubina and
• Alexey Yu. Sukhorukov

Beilstein J. Org. Chem. 2022, 18, 1424–1434, doi:10.3762/bjoc.18.148

• ]. In tripodal molecules, three functional arms are bound to a central trivalent scaffold, which can be a single atom (e.g., carbon, nitrogen, or phosphorus), a small ring (usually aromatic or saturated six-membered ring), or a macrocycle (Figure 1a). The functional properties of tripodal molecules are

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• = red, phosphorus = purple, chlorine = green, hydrogen = pink. C6–Cl is the gg rotamer (from the Cl6–C6–C5–O5 torsion angle). GMD function with probe 19 over 120 min (GMD (100 µg/mL), GDP sugars (50 µM), NAD+ (200 µM)). Dotted trace dictates expected fluorescence output following spiking with GDP-Man 1

Synthesis and electrochemical properties of 3,4,5-tris(chlorophenyl)-1,2-diphosphaferrocenes

• Almaz A. Zagidullin,
• Farida F. Akhmatkhanova,
• Mikhail N. Khrizanforov,
• Robert R. Fayzullin,
• Tatiana P. Gerasimova,
• Ilya A. Bezkishko and
• Vasili A. Miluykov

Beilstein J. Org. Chem. 2022, 18, 1338–1345, doi:10.3762/bjoc.18.139

• ; electrochemical properties; phosphacyclopentadienide anion; phosphaferrocene; phosphonium salt; phosphorus heterocycle; Introduction Among the various heterometallocenes reported to date, phosphaferrocenes are by far the most investigated because of their structural and electronic features [1][2] and remain the

• objects of growing interest in the fields of coordination chemistry [3][4][5] and asymmetric catalysis [6][7]. Due to the sp2-hybridization of the phosphorus atom, phosphaferrocenes are commonly regarded as phosphorus ligands with weaker σ-donor character than classical tertiary phosphines and stronger π

• mediator in the synthesis of asymmetric phosphines starting from white phosphorus [15]. Moreover, the presence of the lone pair of the P atom opens the route to polynuclear complexes [16][17][18] and coordination polymers [19][20][21] with the mixed σ-/π-coordination mode, which is not typical for

Dienophilic reactivity of 2-phosphaindolizines: a conceptual DFT investigation

• Nosheen Beig,
• Aarti Peswani and
• Raj Kumar Bansal

Beilstein J. Org. Chem. 2022, 18, 1217–1224, doi:10.3762/bjoc.18.127

• which their observed relative dienophilic reactivities could be rationalized. Besides, the Fukui functions of the carbon/nitrogen and phosphorus atoms of the >C=P– and –N=P– functionalities were also computed which revealed their hard electrophilic character and accorded well with the dienophilic

• of 1-aza-2-phosphaindolizines 3 with DMB and isoprene occurred at rt, although slowly and were speeded up by the use of sulfur or selenium which oxidized the phosphorus atom of the initially formed product thereby pushing the reaction in the forward direction [14]. The difference in the reactivities

• As discussed earlier, the descriptor Fukui function was developed to determine the hard/soft character of the reactive site in a molecule [19][20][21]. The Fukui functions at the carbon/nitrogen and phosphorus atoms of the >C=P– or –N=P– functionality of 2-phosphaindolizines calculated from the

Mechanochemical bottom-up synthesis of phosphorus-linked, heptazine-based carbon nitrides using sodium phosphide

• Blaine G. Fiss,
• Georgia Douglas,
• Michael Ferguson,
• Jorge Becerra,
• Jesus Valdez,
• Trong-On Do,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2022, 18, 1203–1209, doi:10.3762/bjoc.18.125

• , mechanochemical synthesis of phosphorus-bridged heptazine-based carbon nitrides (g-h-PCN). The structure of these materials was determined through a combination of powder X-ray diffraction (PXRD), X-ray photoelectron spectroscopy (XPS), 31P magic angle spinning nuclear magnetic resonance (MAS NMR), density

• -PCN300) show a reduction in photoluminescent recombination, as well as a nearly two-time increase in photocurrent under broad spectrum irradiation, which are appealing properties for photocatalysis. Keywords: carbon nitride; density functional theory; mechanochemistry; phosphorus; photochemistry

• ; Introduction The development of heteroatom-doped graphitic carbon nitrides (g-CN) has been a rapidly growing area of research since their first report towards water splitting in 2009 [1]. Since that time, the addition of elements such as boron [2], phosphorus [3][4][5], sulfur and oxygen [6] have shown to help

Lewis acid-catalyzed Pudovik reaction–phospha-Brook rearrangement sequence to access phosphoric esters

• Jin Yang,
• Dang-Wei Qian and
• Shang-Dong Yang

Beilstein J. Org. Chem. 2022, 18, 1188–1194, doi:10.3762/bjoc.18.123

• with highly air-sensitive and hazardous phosphorus halides, with the assistance of a suitable base [19][20][21][22][23][24]. As an alternative pathway, the phospha-Brook rearrangement [25][26][27][28][29][30] represents a green approach to phosphoric esters since it uses α-hydroxyphosphonates, which

• catalyst through a similar transformation under solvent-free conditions [44]. Recently, Zhang’s group disclosed a cesium carbonate-catalyzed Pudovik reaction–phospha-Brook rearrangement sequence and extended the phosphorus source from phosphate to phosphonate [45]. Despite of these important advancements

• 3ai was obtained in 21% yield, while the meta-methyl-substituted derivative 1h was converted into the corresponding product 3ah in 63% yield. In addition, the configuration of 3ak was determined by an X-ray crystallographic analysis (CCDC 2177793). To our delight, phosphorus sources containing a

Synthetic strategies for the preparation of γ-phostams: 1,2-azaphospholidine 2-oxides and 1,2-azaphospholine 2-oxides

• Jiaxi Xu

Beilstein J. Org. Chem. 2022, 18, 889–915, doi:10.3762/bjoc.18.90

• China 10.3762/bjoc.18.90 Abstract γ-Phostams include γ-phosphonolactams and γ-phosphinolactams and their fused derivatives, phosphorus analogues of γ-lactams. They are 1,2-azaphospholidine 2-oxides and 1,2-azaphospholine 2-oxides and important biological five-membered azaphosphaheterocycles. They have

• [1][2][3][4][5][6][7][8] and have been widely applied in agrochemicals, medicinal agents, and materials science [9][10]. They are also organic synthetic intermediates and building blocks [7][11][13]. 1,2-Azaphosphaheterocycle oxide derivatives, phosphonolactams and phosphinolactams, are phosphorus

• analogues of the corresponding lactams [11][12][13][14]. 1,2-Azaphospholidine 2-oxides and 1,2-azaphospholine 2-oxides, also called γ-phosphonolactams and γ-phosphinolactams, and their fused derivatives are important five-membered 1,2-azaphosphaheterocyclic derivatives. They are γ-phostams, phosphorus

A trustworthy mechanochemical route to isocyanides

• Francesco Basoccu,
• Federico Cuccu,
• Federico Casti,
• Rita Mocci,
• Claudia Fattuoni and
• Andrea Porcheddu

Beilstein J. Org. Chem. 2022, 18, 732–737, doi:10.3762/bjoc.18.73

• formamide with POCl3 in the presence of a base. Apart from phosphorus-mediated compounds, phosgene or diphosgene [18] work well, despite being still affected by the same limitations of POCl3. Therefore, organic chemists decided to move to other safer shores, so different dehydrating agents were also

Direct C–H amination reactions of arenes with N-hydroxyphthalimides catalyzed by cuprous bromide

• Dongming Zhang,
• Bin Lv,
• Pan Gao,
• Xiaodong Jia and
• Yu Yuan

Beilstein J. Org. Chem. 2022, 18, 647–652, doi:10.3762/bjoc.18.65

• and 3). Different copper salts were tested and the reactions proved to be less efficient (Table 1, entries 4 and 5). Except for triethyl phosphite, the reaction could not be carried out with other phosphorus species (Table 1, entries 6–8). The optimum result was obtained when benzene was employed as

Synthesis and bioactivity of pyrrole-conjugated phosphopeptides

• Qiuxin Zhang,
• Weiyi Tan and
• Bing Xu

Beilstein J. Org. Chem. 2022, 18, 159–166, doi:10.3762/bjoc.18.17

• the designed peptides combines solution synthesis of the enzyme trigger or the fluorophore with the solid-phase synthesis of the pyrrole-peptide conjugates. We used phosphorus pentoxide and phosphoric acid to react with ᴅ-tyrosine, ʟ-tyrosine, ʟ-serine, or ᴅ-serine to produce ᴅ-phosphotyrosine, ʟ

Silica gel and microwave-promoted synthesis of dihydropyrrolizines and tetrahydroindolizines from enaminones

• Robin Klintworth,
• Garreth L. Morgans,
• Stefania M. Scalzullo,
• Charles B. de Koning,
• Willem A. L. van Otterlo and
• Joseph P. Michael

Beilstein J. Org. Chem. 2021, 17, 2543–2552, doi:10.3762/bjoc.17.170

• [57][58][59][60][61][62][63][64][65]. Results are summarized in Table 2. Triphenylphosphine and triethyl phosphite could be used interchangeably in the sulfur extrusion step. However, in most cases the co-elution of enaminones 15 with phosphorus-derived byproducts during chromatographic purification

• was unavoidable, and multiple chromatographic separations reduced the isolated yields. Such contamination with phosphorus-containing byproducts is a well-known problem in Eschenmoser condensations [30]. With particularly difficult separations we simply subjected the impure intermediates (for most of

Exfoliated black phosphorous-mediated CuAAC chemistry for organic and macromolecular synthesis under white LED and near-IR irradiation

• Azra Kocaarslan,
• Zafer Eroglu,
• Önder Metin and
• Yusuf Yagci

Beilstein J. Org. Chem. 2021, 17, 2477–2487, doi:10.3762/bjoc.17.164

• , we present a novel synthetic methodology for the photoinduced CuAAC reaction utilizing exfoliated two-dimensional (2D) few-layer black phosphorus nanosheets (BPNs) as photocatalysts under white LED and near-IR (NIR) light irradiation. Upon irradiation, BPNs generated excited electrons and holes on

• molecular properties of the intermediates and final products were evaluated by spectral and chromatographic analyses. Keywords: black phosphorus; click chemistry; heterogeneous photocatalyst; near infrared; phosphorene; Introduction For the last decade, click chemistry has been recognized as an

• black phosphorus (BP), the most stable allotrope of phosphorus, has been shown as a highly efficient photocatalyst possessing superior features in many respects [36][37]. BP, a vital semiconductor 2D material with excellent physicochemical properties such as high carrier mobility, tunable optical

A novel methodology for the efficient synthesis of 3-monohalooxindoles by acidolysis of 3-phosphate-substituted oxindoles with haloid acids

• Li Liu,
• Yue Li,
• Tiao Huang,
• Dulin Kong and
• Mingshu Wu

Beilstein J. Org. Chem. 2021, 17, 2321–2328, doi:10.3762/bjoc.17.150

• proton at the C-3-position of 3-monohalooxindoles gave diagnostic singlets (5.25–5.93 Hz) instead of double peaks due to the absence of coupling with the phosphorus atom in the 1H NMR experiment. This indicated that the methylene moiety adjacent to the phosphate group had been displaced by a halogen atom

Post-functionalization of drug-loaded nanoparticles prepared by polymerization-induced self-assembly (PISA) with mitochondria targeting ligands

• Janina-Miriam Noy,
• Fan Chen and
• Martina Stenzel

Beilstein J. Org. Chem. 2021, 17, 2302–2314, doi:10.3762/bjoc.17.148

• same conditions as described above. The conjugation product was analysed using 1H and 31P NMR spectroscopy. The 31P NMR spectrum (Figure 2a) shows a peak at 23.07 ppm which belongs to the phosphorus of the triphenylphosphonium moiety. Furthermore, the additional peaks in the region between 7.5–8.2 ppm

Synthesis of O⁶-alkylated preQ₁ derivatives

• Laurin Flemmich,
• Sarah Moreno and
• Ronald Micura

Beilstein J. Org. Chem. 2021, 17, 2295–2301, doi:10.3762/bjoc.17.147

• ] and gave nearly quantitative yields of N2-pivaloyl preQ0 in our hands. Finally, transformation of the 6-carbonyl group by using phosphorus oxychloride gave 6-chloro-7-deazapurine derivative 3 [33]. Notably, attempts to directly transform preQ0 (without N2 protection) into 6-chloro-7-cyano-7

Catalyzed and uncatalyzed procedures for the syntheses of isomeric covalent multi-indolyl hetero non-metallides: an account

• Ranadeep Talukdar

Beilstein J. Org. Chem. 2021, 17, 2102–2122, doi:10.3762/bjoc.17.137

• , nitrogen, oxygen, silicon, phosphorus, sulfur, selenium, and tellurium. This review will skip the reports on the corresponding carbon-centered analogs. Boranes First discovered in 1894 [34], 2,2’-bisarylborinates are used for treating prostate cancers utilizing their property of inhibiting the transient

Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

• Mathias B. Danielsen and
• Jesper Wengel

Beilstein J. Org. Chem. 2021, 17, 1828–1848, doi:10.3762/bjoc.17.125

• negatively charged phosphorus-based linkages. ASOs have the distinctive ability to bind endogenous nucleic acid targets in a sequence-specific manner, thereby inhibiting gene expression and offering opportunities for the treatment of a broad range of diseases. As ASOs interact with their RNA (or DNA) targets

• , ASOs carrying the novel guanidinium modification were mainly localized in the cytoplasm, indicating that the ASOs are taken up by endocytosis but are retained in part in the endocytic vesicles [112]. Utilizing the phosphorus atom as an attachment point for cationic aminoalkyl groups has been employed

• strategy to introduce cationic aminoalkylated moieties onto phosphorus atoms of the ON backbone involves aminoalkylated phosphorothioate linkages. In general, modifications of the backbone have been used in the context of the phosphodiester linkage, while only a few examples can be found for the PS linkage

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• . This modification is achiral at the phosphorus atom (Figure 1C), and thus, unlike the phosphoromonothioate (PS) analogues (extensively covered in other reviews [18][42][87][88]), the synthesized oligonucleotide is stereochemically pure. This simplifies their purification, as there is no longer the need

Highly regio- and stereoselective phosphinylphosphination of terminal alkynes with tetraphenyldiphosphine monoxide under radical conditions

• Dat Phuc Tran,
• Yuki Sato,
• Yuki Yamamoto,
• Shin-ichi Kawaguchi,
• Shintaro Kodama,
• Akihiro Nomoto and
• Akiya Ogawa

Beilstein J. Org. Chem. 2021, 17, 866–872, doi:10.3762/bjoc.17.72

• Innovation, Faculty of Agriculture, Saga University, 152-1 Shonan-cho, Karatsu, Saga 847-0021, Japan 10.3762/bjoc.17.72 Abstract The homolytic cleavage of the PV(O)–PIII bond in tetraphenyldiphosphine monoxide simultaneously provides both pentavalent and trivalent phosphorus-centered radicals with different

• reactivity of the P–P bond, therefore, when the combination of pentavalent phosphorus and trivalent phosphorus was examined, it was found that the desired radical addition of Ph2P(X)PPh2 (X = O, S) to alkenes successfully occurred [42][43] (Scheme 1c and 1d). However, in the case of Ph2P(O)PPh2, its

• near-UV region. When benzene was used instead of CDCl3 under xenon lamp irradiation, the reaction did not proceed because 1 was less soluble in benzene than CDCl3 (Table 1, entry 4). The radical initiator, V-40, was found to be an appropriate initiator for the generation of phosphorus-centered radicals