Mechanochemical bottom-up synthesis of phosphorus-linked, heptazine-based carbon nitrides using sodium phosphide

• Blaine G. Fiss,
• Georgia Douglas,
• Michael Ferguson,
• Jorge Becerra,
• Jesus Valdez,
• Trong-On Do,
• Tomislav Friščić and
• Audrey Moores

Beilstein J. Org. Chem. 2022, 18, 1203–1209, doi:10.3762/bjoc.18.125

• a chlorine terminated monomeric unit based on an experimentally resolved, nitrogen-bridged, paddlewheel structure (Figure 4d) [48]. Calculations resulted in a single chemical environment for the phosphorus atoms in the three model structures. The corrugated and planar network structures have

• the benefit of pairing DFT calculations to experimental, structural studies. PXRD patterns of g-h-PCN (green) and g-h-PCN300 (teal). XPS scans of a) C 1s, b) N 1s and c) P 2p for the pre-annealed g-h-PCN and d) C 1s, e) N 1s and f) P 2p focused scans of g-h-PCN300 after annealing at 300 °C for 1 hour

Derivatives of benzo-1,4-thiazine-3-carboxylic acid and the corresponding amino acid conjugates

• Péter Kisszékelyi,
• Tibor Peňaška,
• Klára Stankovianska,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2022, 18, 1195–1202, doi:10.3762/bjoc.18.124

• better results, but the oxidative dimerization was still a competitive reaction. NMR analyses of the isolated product 10ac also revealed the presence of the corresponding 2H-isomer in a low amount, but it was not isolated separately. Quantum chemical calculations (ωB97xD/6-31G(d)//MN15/6-311+G(2d,p

• obtained by DFT calculations (ωB97xD/6-31G*). Conditions applied for the condensation reactions.a Stereoselective catalytic hydrogenation reactions of dehydroamino acid ester 14. Supporting Information Supporting Information File 230: Experimental procedures and characterization data, additional

Thermally activated delayed fluorescence (TADF) emitters: sensing and boosting spin-flipping by aggregation

• Ashish Kumar Mazumdar,
• Gyana Prakash Nanda,
• Nisha Yadav,
• Upasana Deori,
• Upasha Acharyya,
• Bahadur Sk and
• Pachaiyappan Rajamalli

Beilstein J. Org. Chem. 2022, 18, 1177–1187, doi:10.3762/bjoc.18.122

• Supporting Information File 1. Both compounds were further purified by temperature-gradient vacuum sublimation and characterized by 1H and 13C NMR spectroscopy (Figures S9–S12, Supporting Information File 1) as well as high-resolution mass spectrometry. Photophysical studies and DFT calculations The UV–vis

• stronger molar extinction coefficient was obtained for the CT band in BPy-pTC (ε373 nm = 17310 M−1⋅cm−1) as compared to BPy-p3C (ε365 nm = 14690 M−1⋅cm−1). Computational calculations were performed to understand the ground state electronic communication between the donor and acceptor in BPy-pTC and BPy-p3C

• 12.7% in THF solution to 7.0% in the aggregated state. The enhanced emission in the aggregated state of BPy-p3C as compared to the THF solution was due to the restricted D–A rotation in the aggregated state [21]. As revealed from the photophysical studies and DFT calculations, BPy-p3C has a twisted

Experimental and theoretical studies on the synthesis of 1,4,5-trisubstituted pyrrolidine-2,3-diones

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Nguyen Ngoc Tri,
• Luc Van Meervelt,
• Nguyen Tien Trung and
• Wim Dehaen

Beilstein J. Org. Chem. 2022, 18, 1140–1153, doi:10.3762/bjoc.18.118

• proposed based on computational results and the main product is formed favorably following the PES via the lowest ΔG# pathway in both the gas-phase and an ethanol solvent model. DFT calculations showed that kinetic selectivity is more significant than thermodynamic selectivity for forming main products

• level brings an efficient evaluation and good orientation in experimental work [43]. Density functional theory (DFT) calculations were used to explore the mechanistic aspects of the reaction between 4-acetyl-3-hydroxy-1,5-diphenyl-3-pyrrolin-2-one and methylamine (CH3NH2) to achieve 4-(1-methylamino

• 4a–c in DMSO [46], a hydrogen-bond accepting solvent (Scheme 3). To clarify further this statement, DFT calculations were performed at the B3LYP/6-311++G(2d,2p)//B3LYP/6-31+G(d,p) level of theory as given in Table 2 and Table 3. The theoretical results show that structure 4a is more stable than 4a

A Streptomyces P450 enzyme dimerizes isoflavones from plants

• Run-Zhou Liu,
• Shanchong Chen and
• Lihan Zhang

Beilstein J. Org. Chem. 2022, 18, 1107–1115, doi:10.3762/bjoc.18.113

• compound for calculation of ABTS-reducing activity (in %). Computational ECD calculation of compound 1 Merck molecular force field (MMFF) and DFT as well as TDDFT calculations were carried out with the Spartan 14 software (Wavefunction Inc.) and the Gaussian 16 program [41], respectively. Conformers within

• the 2 kJ/mol energy window were generated and optimized using DFT calculations at the B3LYP/6-31+G (d,p) level. Frequency calculations were performed at the same level to confirm that each optimized conformer was true minimum and to estimate the relative thermal free energy (ΔG) at 298.15 K. The two

• conformers were chosen for ECD calculations in methanol at the B3LYP/6-311+G (d,p) level. Solvent effects were taken into consideration using the self-consistent reaction field (SCRF) method with the polarizable continuum model (PCM). The ECD spectrum was generated by the SpecDis program [42] using a

Synthesis, optical and electrochemical properties of (D–π)₂-type and (D–π)₂Ph-type fluorescent dyes

• Kosuke Takemura,
• Kazuki Ohira,
• Taiki Higashino,
• Keiichi Imato and
• Yousuke Ooyama

Beilstein J. Org. Chem. 2022, 18, 1047–1054, doi:10.3762/bjoc.18.106

• stannyl D–π unit with 1,3-diiodobenzene, respectively. Their optical and electrochemical properties were investigated by photoabsorption and fluorescence spectroscopy, time-resolved fluorescence spectroscopy, cyclic voltammetry (CV) and molecular orbital (MO) calculations. In toluene the photoabsorption

• orbital (MO) calculations. Results and Discussion Using a toluene solution containing 1,3-diiodobenzene and (diphenylamino)carbazole-thiophenestannane derivative 1 [33] in the presence of Pd(PPh3)4, the (D–π)2-type and (D–π)2Ph-type fluorescent dyes OTK-2 [33] and OTT-2 were obtained by Stille coupling of

• ) of OTK-2. Semi-empirical MO calculations (PM5, INDO/S method) revealed that for OTK-2 both the HOMO and LUMO were mostly localized on the two (diphenylamino)carbazole-thiophene moieties. On the other hand, for OTT-2 both the HOMO and LUMO are delocalized over the whole molecule through the thiophene

Understanding the competing pathways leading to hydropyrene and isoelisabethatriene

• Shani Zev,
• Marion Ringel,
• Ronja Driller,
• Bernhard Loll,
• Thomas Brück and
• Dan T. Major

Beilstein J. Org. Chem. 2022, 18, 972–978, doi:10.3762/bjoc.18.97

• two byproducts, isoelisabethatrienes A and B. Fascinatingly, a single active site mutation (M75L) diverts the product distribution towards isoelisabethatrienes A and B. In the current work, we study the competing pathways leading to these products using quantum chemical calculations in the gas phase

• inherent chemistry in these reactions and also points to some understanding of the possible thermodynamic and kinetic control in the enzyme. Results Reaction mechanism To better understand the HP and IE reaction pathways, we performed quantum mechanics (QM) calculations using density functional theory (DFT

• ). We studied the inherent chemistry of the reaction leading to HP and IE using gas-phase calculations. This provided the free energy of distinct carbocation intermediates and transition states along the proposed reaction path leading to products in the gas phase. The gas phase is a natural choice as a

Electrochemical and spectroscopic properties of twisted dibenzo[g,p]chrysene derivatives

• Tomoya Imai,
• Ryuhei Akasaka,
• Naruhiro Yoshida,
• Toru Amaya and
• Tetsuo Iwasawa

Beilstein J. Org. Chem. 2022, 18, 963–971, doi:10.3762/bjoc.18.96

• design of DBC-based materials. Here, the electrochemical and spectroscopic properties of DBC derivatives were investigated, and the effects of substituents and torsion of the naphthalene moiety were examined based on density functional theory (DFT) calculations. All the substituted DBC derivatives showed

• higher oxidation potentials than that for DBC-H, even for compounds that contained an electron-donating group such as DBC-Me and DBC-SMe. DFT calculations clearly indicate that these higher oxidation potentials are due to the ineffective conjugation of the MeO group, which is oriented perpendicular to

• states. Herein, we report on the electrochemical and spectroscopic properties of the DBC derivatives, where the effects of substituents and torsion were examined with the aid of DFT calculations. Consequently, the findings revealed that the substitution at the Z position induces a change in the

Electroreductive coupling of 2-acylbenzoates with α,β-unsaturated carbonyl compounds: density functional theory study on product selectivity

• Naoki Kise and
• Toshihiko Sakurai

Beilstein J. Org. Chem. 2022, 18, 956–962, doi:10.3762/bjoc.18.95

• studied using DFT calculations. Keywords: 2-acylbenzoates; chlorotrimethylsilane; 3-(3-cyanoethyl)phthalides; 2-cyanonaphthalen-1-ols; electroductive coupling; Introduction The electroreductive coupling between carbon–heteroatom and carbon–carbon double bonds is one of the promising methods for carbon

• 2 and subsequent rearrangement to 3 are also discussed. In particular, the latter mechanism was studied using density functional theory (DFT) calculations and it was suggested that the ΔG for the cyclization step of an intermediate enolate anion determines the product selectivity. Results and

• -oxobutyl)phthalides 5 were produced as the sole products by the reaction of 1 with methyl vinyl ketone (2b). It was found by DFT calculations for the cyclization step of the intermediate enolate anions that the product selectivity was in good agreement with the free energy differences (∆G) in the

Introducing a new 7-ring fused diindenone-dithieno[3,2-b:2',3'-d]thiophene unit as a promising component for organic semiconductor materials

• Valentin H. K. Fell,
• Joseph Cameron,
• Alexander L. Kanibolotsky,
• Eman J. Hussien and
• Peter J. Skabara

Beilstein J. Org. Chem. 2022, 18, 944–955, doi:10.3762/bjoc.18.94

• ] and Gaussview [74] programs. A frequency calculation showed that all frequencies are positive indicating that a minimum was found [75]. The calculations showed that the middle section consisting of seven fused ring systems is nearly planar (Figure 10). The thiophene groups carrying the ethylhexyl

Anti-inflammatory aromadendrane- and cadinane-type sesquiterpenoids from the South China Sea sponge Acanthella cavernosa

• Shou-Mao Shen,
• Qing Yang,
• Yi Zang,
• Jia Li,
• Xueting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 916–925, doi:10.3762/bjoc.18.91

• -dependent density functional theory/electronic circular dichroism (TDDFT-ECD) calculations or X-ray diffraction analysis. A plausible biosynthetic pathway of these sesquiterpenoids and their internal correlation were proposed and discussed. In an in vitro bioassay, (+)-aristolone (3) exhibited promising

• from isoprene units rather than by the much more common routes to aromatics involving acetate or shikimate [37]. In addition, the absolute stereochemistry of (+)-1 was unambiguously elucidated by TDDFT-ECD calculations, and the complete structure of 2 was confirmed for the first time by X-ray

• Centre with CCDC number 2173439 (2). The data could be obtained free of charge via http://www.ccdc.cam.ac.uk/data_request/cif. Details of the crystallographic data were shown in Supporting Information File 1. Computational section. TDDFT-ECD calculations. Conformational searches were conducted using the

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation

• Maxime Pypec,
• Laurent Jouffret,
• Claude Taillefumier and
• Olivier Roy

Beilstein J. Org. Chem. 2022, 18, 845–854, doi:10.3762/bjoc.18.85

• studied in detail. Computational studies For the theoretical calculations, acetyl N-(methylamino)dimethylamide model peptoids (Ac-N(NMe)n-NMe2) were used instead of the corresponding synthesized benzyl esters. The model structures were generated using the coordinates extracted from the single crystal X

Synthesis and HDAC inhibitory activity of pyrimidine-based hydroxamic acids

• Virginija Jakubkiene,
• Gabrielius Ernis Valiulis,
• Markus Schweipert,
• Asta Zubriene,
• Daumantas Matulis,
• Franz-Josef Meyer-Almes and
• Sigitas Tumkevicius

Beilstein J. Org. Chem. 2022, 18, 837–844, doi:10.3762/bjoc.18.84

• °C (Scheme 2). It is known that there are two possible tautomeric forms of each hydroxamic acid: the keto and enol tautomer. Furthemore, each tautomer can adopt an E or Z conformation (Figure 2) [32][33][34][35][36]. The results of NMR spectra and theoretical calculations showed that hydroxamic acids

Synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via cyclopropene cycloadditions to the stable azomethine ylide derived from Ruhemann's purple

• Alexander S. Filatov,
• Olesya V. Khoroshilova,
• Anna G. Larina,
• Vitali M. Boitsov and
• Alexander V. Stepakov

Beilstein J. Org. Chem. 2022, 18, 769–780, doi:10.3762/bjoc.18.77

• experimentally observed stereoselectivity. Keywords: azomethine ylides; cycloaddition; cyclopropenes; DFT calculations; spiro heterocycles; Introduction Spiro compounds (molecules containing at least two rings with only one common atom) are an important class of both synthetic and naturally occurring

• ourselves exclusively to carrying out laboratory experiments. We turned to DFT calculations (M11 density functional theory) [42][43][44][45][46] to interpret the experimental results. At the beginning of the computational study, we evaluated the relative stability of prototropic tautomers which are formed

• diastereoselective approach for the synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane through cycloaddition reactions of a stable azomethine ylide – protonated Ruhemann's purple to cyclopropenes. The cycloaddition reaction is compatible with a broad scope of cyclopropenes. DFT calculations

An isoxazole strategy for the synthesis of 4-oxo-1,4-dihydropyridine-3-carboxylates

• Timur O. Zanakhov,
• Ekaterina E. Galenko,
• Mikhail S. Novikov and
• Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2022, 18, 738–745, doi:10.3762/bjoc.18.74

• intermediate 3, as shown for the reaction of isoxazole 1g (Scheme 2). Taking into account that compounds 2 can potentially exist in pyridone and pyridole tautomeric forms, we performed calculations at the DFT B3LYP-D3/6-311+G(d,p) level of theory with SMD solvent model to evaluate this tautomeric equilibrium

Structural basis for endoperoxide-forming oxygenases

• Takahiro Mori and
• Ikuro Abe

Beilstein J. Org. Chem. 2022, 18, 707–721, doi:10.3762/bjoc.18.71

• molecular dynamics analyses, as well as DFT calculations of the FtmOx1 reaction, suggested a modified mechanism [72][73][74]. In this mechanism, the tyrosyl radical at Tyr224 is generated by the Fe(IV)=O species, which abstracts a hydrogen atom at C21 to form an endoperoxide ring through the reaction with

Mechanochemical halogenation of unsymmetrically substituted azobenzenes

• Dajana Barišić,
• Mario Pajić,
• Ivan Halasz,
• Darko Babić and
• Manda Ćurić

Beilstein J. Org. Chem. 2022, 18, 680–687, doi:10.3762/bjoc.18.69

• species, cyclopalladated intermediates, and products (Figure 1). The monitoring results confirmed the crucial role of TsOH and acetonitrile (MeCN) as additives in the catalytic bromination of the C–H bond in L1. The experimental results were supported by quantum-chemical calculations, which showed that

Syntheses of novel pyridine-based low-molecular-weight luminogens possessing aggregation-induced emission enhancement (AIEE) properties

• Masayori Hagimori,
• Tatsusada Yoshida,
• Yasuhisa Nishimura,
• Yukiko Ogawa and
• Keitaro Tanaka

Beilstein J. Org. Chem. 2022, 18, 580–587, doi:10.3762/bjoc.18.60

• -induced emission enhancement (AIEE) properties in aqueous media. Compounds 4a and 4e, bearing electron-withdrawing groups (Br and CF3, respectively) showed 7.0 and 15 times fluorescence enhancement. Time-dependent density functional theory (TD-DFT) calculations were performed to gain better insight into

• in AIEE. To compare the electronic natures of the compounds with and without AIEE, we performed TD-DFT calculations on each monomer of 3a, 4a, and 4e. The graphical representations of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) for the ground-state

• 464 to 468 nm. From calculations, a smaller solvent effect is seen in the Exmaxcalc values for compound 4a (484–488 nm) and 4e (404–407 nm), whereas the Exmaxobs were found at 476 nm in ethanol and 413 nm in water for 4a and at 378 nm in ethanol and 415 nm in water for compound 4e, respectively. This

Terpenoids from Glechoma hederacea var. longituba and their biological activities

• Dong Hyun Kim,
• Song Lim Ham,
• Zahra Khan,
• Sun Yeou Kim,
• Sang Un Choi,
• Chung Sub Kim and
• Kang Ro Lee

Beilstein J. Org. Chem. 2022, 18, 555–566, doi:10.3762/bjoc.18.58

• structure elucidation was performed for the five new compounds (1–5) using 1D and 2D NMR, HRESIMS, DP4+ and ECD calculations, and chemical methods. All the isolates (1–9) were assessed for their antineuroinflammatory activities on nitric oxide (NO) production in lipopolysaccharide (LPS)-activated BV-2 cells

• via an equation below [24] (: calculated 13C NMR chemical shift for nucleus x, σ0: shielding tensor for the carbon nuclei in tetramethylsilane, σx: shielding tensor for the carbon nucleus x) The calculated 13C NMR chemical shifit of 2 were averaged as described above and used for calculations of DP4

BINOL as a chiral element in mechanically interlocked molecules

• Matthias Krajnc and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2022, 18, 508–523, doi:10.3762/bjoc.18.53

• for the non-interlocked mixture, see Figure 15). DFT calculations showed that the reaction takes place by cooperative action of the Li phosphate macrocycle and the amine thread, enabled by the mechanical bond. The Li phosphate acts as a Lewis acid to activate the malonic acid diethyl ester, which is

Substituent effect on TADF properties of 2-modified 4,6-bis(3,6-di-tert-butyl-9-carbazolyl)-5-methylpyrimidines

• Irina Fiodorova,
• Tomas Serevičius,
• Rokas Skaisgiris,
• Saulius Juršėnas and
• Sigitas Tumkevicius

Beilstein J. Org. Chem. 2022, 18, 497–507, doi:10.3762/bjoc.18.52

• confirm the structures of the synthesized compounds (see Figures S1–S27 in Supporting Information File 1). DFT analysis To assess the structural and electronic properties of the chromophores tCbz-mPYR and 1–6, quantum chemical calculations were performed. DFT analysis revealed that all studied compounds

• 49 ms integration time. Solid-state samples were mounted in a closed cycle He cryostat (Cryo Industries 204 N) for PL measurements in oxygen-free conditions. Quantum chemical calculations were carried out by using density functional theory at the B3LYP/6-31G(d) level as implemented in a software

Comparative study of thermally activated delayed fluorescent properties of donor–acceptor and donor–acceptor–donor architectures based on phenoxazine and dibenzo[a,j]phenazine

• Saika Izumi,
• Prasannamani Govindharaj,
• Anna Drewniak,
• Paola Zimmermann Crocomo,
• Satoshi Minakata,
• Leonardo Evaristo de Sousa,
• Piotr de Silva,
• Przemyslaw Data and
• Youhei Takeda

Beilstein J. Org. Chem. 2022, 18, 459–468, doi:10.3762/bjoc.18.48

• efficiency (EQE) exceeds the theoretical maximum of those with prompt fluorescent emitters. Most importantly, comparative study of the D–A molecule and its D–A–D counterpart from the viewpoints of the experiments and theoretical calculations revealed the effect of the number of the electron donor on the

• on the physicochemical properties of the DBPHZ-cored D–A system, the properties of D–A compound 1 were compared with those of POZ-DBPHZ. Theoretical calculations further support the impact of the donor numbers in the DBPHZ-cored D–A system. Results and Discussion Synthesis of materials To synthesize

• ], indicating a dominant non-radiative decay of the excited state for the D–A type compound, which was supported by the theoretical calculations (vide infra). In the solid state, the D–A compound 1 showed an emission at around λem = 560 nm with a very low ΦPL (<0.1) (Figure S1 in Supporting Information File 1

Site-selective reactions mediated by molecular containers

• Rui Wang and
• Yang Yu

Beilstein J. Org. Chem. 2022, 18, 309–324, doi:10.3762/bjoc.18.35

• (Figure 1c). This kind of unusual site-selectivity originated from the fixed orientation of the guest substrates confined to the cage host A before the reaction. Force-field calculations showed that the guest substrates 1 and 2 were parallel to each other with the double bond of 2 in close contact with

• reactions. Naphthalene is usually hard to undergo Diels–Alder reactions [44][45][46], even though the quantum-mechanical and thermochemical calculations suggest that the reaction is exothermic, which indicates the entropic cost is significant [47]. In 2010, the same group reported another interesting site

Iridium-catalyzed hydroacylation reactions of C1-substituted oxabenzonorbornadienes with salicylaldehyde: an experimental and computational study

• Angel Ho,
• Austin Pounder,
• Krish Valluru,
• Leanne D. Chen and
• William Tam

Beilstein J. Org. Chem. 2022, 18, 251–261, doi:10.3762/bjoc.18.30

• density functional theory calculations. We set out to confirm the catalytic cycle in detail, the geometries of the intermediates, the energy profiles of the reactions, and most importantly, the origin of regioselectivity. Results and Discussion Experimental We began our investigation with C1-methyl

• electron-withdrawing groups inactivates the iridium catalyst, perhaps by chelation with the carbonyl and the bridging oxygen atom. Computational Computational details All density functional theory (DFT) calculations in this study were carried out with the Gaussian 16, C.01 suite of programs [68]. Geometry

• optimization and frequency calculations. Frequency analyses and single-point energies were calculated with the M06 functional [69] with the triple-ζ basis set def2TZVP [70] with the PCM (1,4-dioxane) solvent model [72]. The Gibbs free energies of formation of the reactants, products, and transition states were

1,2-Naphthoquinone-4-sulfonic acid salts in organic synthesis

• Ruan Carlos B. Ribeiro,
• Patricia G. Ferreira,
• Amanda de A. Borges,
• Luana da S. M. Forezi,
• Fernando de Carvalho da Silva and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 53–69, doi:10.3762/bjoc.18.5

• equilibrium between A and B using semiempirical calculations (AM1 and PM3) and DFT (B3LYP/6-31G(d)) in the gas phase and water, where it was observed that in the gas phase B is the most stable, while in water A is formed, which is in agreement with the experimental results reported in the literature. There