(Phenylamino)pyrimidine-1,2,3-triazole derivatives as analogs of imatinib: searching for novel compounds against chronic myeloid leukemia

• Luiz Claudio Ferreira Pimentel,
• Lucas Villas Boas Hoelz,
• Henayle Fernandes Canzian,
• Frederico Silva Castelo Branco,
• Andressa Paula de Oliveira,
• Vinicius Rangel Campos,
• Floriano Paes Silva Júnior,
• Rafael Ferreira Dantas,
• Jackson Antônio Lamounier Camargos Resende,
• Anna Claudia Cunha,
• Nubia Boechat and
• Mônica Macedo Bastos

Beilstein J. Org. Chem. 2021, 17, 2260–2269, doi:10.3762/bjoc.17.144

• NMR spectra. For structural confirmation of these new derivatives, we also carried out an X-ray diffraction study of compound 2b. Yellow single crystals suitable for X-ray diffraction analysis were obtained by slow evaporation of a solution of 2b in dichloromethane. Based on the X-ray crystallographic

• crystallization and X-ray diffraction experiments for compound 2b were performed. All samples evaluated had low scattering patterns and germinated crystals. This resulted in poor quality data, which limited the quality of the refinement. Structure illustrations were generated using ORTEP-3 for Mercury [45], and

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• structures, albeit with no control over the DP, could be prepared via chemoenzymatic polymerization of α-laminaribiosyl fluoride donors catalyzed by the mutated barley β(1–3)-glucanase [144][145]. Linear β(1–3)-glucans with DP of 30–40 appeared as lamellar, hexagonal crystals. Electron and X-ray diffraction

Development of N-F fluorinating agents and their fluorinations: Historical perspective

• Teruo Umemoto,
• Yuhao Yang and
• Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

• (C5H5NH)BF4(BF3OH), which was a 1:1 mixture of the N-fluoropyridinium salt and N-hydropyridinium salt (anion parts; BF4 and BF3OH), based on an X-ray diffraction study of a commercial sample [42]. 1-6. N-Fluoroquinuclidinium fluoride In 1986 as the N-F pyridinium reagents were emerging, Banks et al

Free-radical cyclization approach to polyheterocycles containing pyrrole and pyridine rings

• Ivan P. Mosiagin,
• Olesya A. Tomashenko,
• Dar’ya V. Spiridonova,
• Mikhail S. Novikov,
• Sergey P. Tunik and
• Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2021, 17, 1490–1498, doi:10.3762/bjoc.17.105

• reagents (Scheme 2). Luckily, 4-(2-iodophenyl)pyrrole 2 gave under these conditions target heterocyclic skeleton 3a in 50% yield (Scheme 2). Salt 3a was characterized by 1H, 13C NMR and HRMS, its structure was also confirmed by single-crystal X-ray diffraction analysis (Figure 1). Since iodo-substituted

• . Synthesis of compounds 1, 3 and 6. Synthesis of compounds 16–18. Supporting Information Supporting Information File 210: Experimental procedures, compound characterization data, X-ray diffraction experiment, and copies of NMR spectra of new compounds. Funding We gratefully acknowledge the financial

• support of the Russian Science Foundation project 16-13-10036. This research was carried out using resources of the Centre for Magnetic Resonance, the Research Centre for X-ray Diffraction Studies, the Centre for Chemical Analysis and Materials, and the Computer Centre of the Science Park of Saint

Cascade intramolecular Prins/Friedel–Crafts cyclization for the synthesis of 4-aryltetralin-2-ols and 5-aryltetrahydro-5H-benzo[7]annulen-7-ols

• Jie Zheng,
• Shuyu Meng and
• Quanrui Wang

Beilstein J. Org. Chem. 2021, 17, 1481–1489, doi:10.3762/bjoc.17.104

• configuration assignment made by NMR analysis, the sulfonate derivative 21 from 14af was prepared by reaction with tosyl chloride. For compound 21, we were able to obtain single crystals suitable for X-ray analysis and the X-ray diffraction studies on 21 confirmed undoubtedly its trans-configuration. The ORTEP

Synthesis of 1-indolyl-3,5,8-substituted γ-carbolines: one-pot solvent-free protocol and biological evaluation

• Premansh Dudhe,
• Mena Asha Krishnan,
• Kratika Yadav,
• Diptendu Roy,
• Krishnan Venkatasubbaiah,
• Biswarup Pathak and
• Venkatesh Chelvam

Beilstein J. Org. Chem. 2021, 17, 1453–1463, doi:10.3762/bjoc.17.101

• the corresponding γ-carboline products was confirmed unequivocally by single-crystal X-ray diffraction analysis of 3ac (Figure 2). The presence of two substituents in the 1,5-position of indole-2-carbaldehyde substrates such as 1e (5-methoxy-1-methyl-1H-indole-2-carbaldehyde) and 1f (1-methyl-5-phenyl

Structural effects of meso-halogenation on porphyrins

• Keith J. Flanagan,
• Maximilian Paradiz Dominguez,
• Zoi Melissari,
• Hans-Georg Eckhardt,
• René M. Williams,
• Dáire Gibbons,
• Caroline Prior,
• Gemma M. Locke,
• Alina Meindl,
• Aoife A. Ryan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2021, 17, 1149–1170, doi:10.3762/bjoc.17.88

• -crystal X-ray diffraction data were collected on a Bruker APEX 2 DUO CCD, Rigaku CCD, or Bruker D8 Quest ECO diffractometer using graphite-monochromated Mo Kα (λ = 0.71073 Å) and Incoatec IμS Cu Kα (λ = 1.54178 Å) radiation at 100(2), 112(2), and 123(2) K with an Oxford Cryosystems Cobra low-temperature

Synthesis of functionalized imidazo[4,5-e]thiazolo[3,2-b]triazines by condensation of imidazo[4,5-e]triazinethiones with DMAD or DEAD and rearrangement to imidazo[4,5-e]thiazolo[2,3-c]triazines

• Alexei N. Izmest’ev,
• Dmitry B. Vinogradov,
• Natalya G. Kolotyrkina,
• Angelina N. Kravchenko and
• Galina A. Gazieva

Beilstein J. Org. Chem. 2021, 17, 1141–1148, doi:10.3762/bjoc.17.87

• 5i was additionally confirmed by X-ray diffraction analysis (Figure 3). Conclusion Thus, the conditions for the regioselective preparation of each of the regioisomeric functionalized derivatives of imidazo[4,5-e]thiazolo[3,2-b]-1,2,4-triazines 4 and imidazo[4,5-e]thiazolo[2,3-c]-1,2,4-triazines 5 in

N-tert-Butanesulfinyl imines in the asymmetric synthesis of nitrogen-containing heterocycles

• Joseane A. Mendes,
• Paulo R. R. Costa,
• Miguel Yus,
• Francisco Foubelo and
• Camilla D. Buarque

Beilstein J. Org. Chem. 2021, 17, 1096–1140, doi:10.3762/bjoc.17.86

• stereochemistry of these compounds were assigned based on the single-crystal X-ray diffraction analysis of azaspiroheptane 45 with a 9-fenanthryl substituent at 1-position. The same three-step procedure was applied by Reddy and co-workers to synthesize 1-substituted 2,6-diazaspiro[3.3]heptanes 48, starting in

Synthetic accesses to biguanide compounds

• Oleksandr Grytsai,
• Cyril Ronco and
• Rachid Benhida

Beilstein J. Org. Chem. 2021, 17, 1001–1040, doi:10.3762/bjoc.17.82

• in the efforts to explain the properties and reactivity of this class of compounds. In 1977, S. Ernst et al. proved by X-ray diffraction that biguanide has no hydrogen atom in position 3, an observation that has been later confirmed by quantum chemical geometry optimization studies (Figure 1, 1b) [1

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

• Mio Matsumura,
• Takahiro Teramoto,
• Masato Kawakubo,
• Masatoshi Kawahata,
• Yuki Murata,
• Kentaro Yamaguchi,
• Masanobu Uchiyama and
• Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

• recrystallization. The molecular structure of 2, determined through single-crystal X-ray diffraction analysis, is illustrated in Figure 2, and selected geometrical parameters are shown in Table 1. The results revealed that the naphthalene and fused phosphole rings are almost coplanar (mean deviation = 0.030 Å). The

Synthesis of (Z)-3-[amino(phenyl)methylidene]-1,3-dihydro-2H-indol-2-ones using an Eschenmoser coupling reaction

• Lukáš Marek,
• Lukáš Kolman,
• Jiří Váňa,
• Jan Svoboda and
• Jiří Hanusek

Beilstein J. Org. Chem. 2021, 17, 527–539, doi:10.3762/bjoc.17.47

• solid state by X-ray diffraction. The important role of the intramolecular hydrogen bond fixing the (Z)-configuration has also been observed in the crystal structures of other 3-aminomethylidene derivatives containing a primary or secondary nitrogen [14][49][50][51][52]. The (Z)-configuration of the

A new and efficient methodology for olefin epoxidation catalyzed by supported cobalt nanoparticles

• Lucía Rossi-Fernández,
• Viviana Dorn and
• Gabriel Radivoy

Beilstein J. Org. Chem. 2021, 17, 519–526, doi:10.3762/bjoc.17.46

• confirming the heterogeneous nature of the catalytic method. The freshly prepared CoNPs/MgO catalyst was characterized by means of transmission electron microscopy (TEM), energy dispersive X-ray spectroscopy (EDX), inductively coupled plasma atomic emission spectroscopy (ICP-AES), X-ray diffraction (XRD) and

• . X-ray diffraction (XRD) analyses were performed using a Bruker AXS D8 Advance diffractometer, equipped with a Cu-Kα1,2 radiation source. Atomic absorption spectroscopy was carried out on a Perkin Elmer AAnalist200 spectrometer. X-ray photoelectron spectroscopic analyses (XPS) were performed on a PHI

Deoxygenative C2-heteroarylation of quinoline N-oxides: facile access to α-triazolylquinolines

• Geetanjali S. Sontakke,
• Rahul K. Shukla and
• Chandra M. R. Volla

Beilstein J. Org. Chem. 2021, 17, 485–493, doi:10.3762/bjoc.17.42

• ). Electronically rich Me and OMe groups at the 4- or 6-positions of N-oxides were tolerated and delivered the corresponding C2-triazolylquinolines 3z, 3aa and 3ab in 85–90% yield. Further, the structure was unambiguously confirmed by the single-crystal X-ray diffraction analysis of 3z [63]. Halogenated substrates

Mesoionic tetrazolium-5-aminides: Synthesis, molecular and crystal structures, UV–vis spectra, and DFT calculations

• Vladislav A. Budevich,
• Sergei V. Voitekhovich,
• Alexander V. Zuraev,
• Vadim E. Matulis,
• Vitaly E. Matulis,
• Alexander S. Lyakhov,
• Ludmila S. Ivashkevich and
• Oleg A. Ivashkevich

Beilstein J. Org. Chem. 2021, 17, 385–395, doi:10.3762/bjoc.17.34

• ) level of theory [42]. X-ray structure determination Single crystal X-ray diffraction data of the mesoionic compounds 8a, 10, 11a, and salt 9 were collected on a SMART Apex II diffractometer using graphite monochromatic Mo Kα radiation (λ = 0.71073 Å) at a temperature of 100 K. The structures were solved

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

• analysis of the structures of 56f, 13f, and 21f by X-ray diffraction crystallography revealed similar bond angle distortions [64][65]. A considerable delocalization of the positive charge in the aryl ring was therefore suggested (Scheme 15): in the dominant resonance form 25f’, 48f’, or 14f’, the α

Annulation of a 1,3-dithiole ring to a sterically hindered o-quinone core. Novel ditopic redox-active ligands

• Sergey V. Norkov,
• Anton V. Cherkasov,
• Andrey S. Shavyrin,
• Maxim V. Arsenyev,
• Viacheslav A. Kuropatov and
• Vladimir K. Cherkasov

Beilstein J. Org. Chem. 2021, 17, 273–282, doi:10.3762/bjoc.17.26

• mixture. X-ray diffraction data revealed that the bond lengths distribution in the six-membered ring of 6b is typical of sterically hindered o-quinones. The annulated fragment including the 1,3-dithiole cycle and the malononitrile unit is almost flat. The six-membered o-quinone ring is distorted due to

• . Heating the mixture at 60 °C for 4 h does not result in any change of the color from that characteristic of o-quinone 4. After cooling of the solution red crystals of adduct 8 were isolated (see Figure 2 and Figure S6 in Supporting Information File 1). The X-ray diffraction study reveals that adduct 8 is

• bulky sulfur-containing group. The possible pathway for the following cyclization is the Michael addition of the sulfide atom to the central carbon of the acetylacetonate group [38][39][40][41]. The X-ray diffraction study as well as IR and NMR spectroscopy data reveal that in all synthesized compounds

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

Synthesis, crystal structures and properties of carbazole-based [6]helicenes fused with an azine ring

• Daria I. Tonkoglazova,
• Anna V. Gulevskaya,
• Konstantin A. Chistyakov and
• Olga I. Askalepova

Beilstein J. Org. Chem. 2021, 17, 11–21, doi:10.3762/bjoc.17.2

• -detection (see Supporting Information File 1, Figures S38–S40). X-ray molecular structures The structures of the title compounds 10a–c were further explored by a single-crystal X-ray diffraction analysis (Figure 1, see also Supporting Information File 1, Figures S35–S37 and Table S1) and compared with that

• steps of the method are electrophile-induced 6-endo-dig cyclizations of ortho-alkynylated biaryls. The overall yields of helicenes in five stages of the synthesis exceed 30%. The single-crystal X-ray diffraction analysis revealed the non-planar crystal structures of the synthesized helicenes responsible

• studies and HRMS measurements (Centre for X-ray Diffraction Studies and Chemical Analysis and Materials Research Centre, Institute of Chemistry, St. Petersburg State University). Funding The authors gratefully acknowledge the Russian Foundation for Basic Research (grant No 18-03-00006) for financial

Construction of pillar[4]arene[1]quinone–1,10-dibromodecane pseudorotaxanes in solution and in the solid state

• Xinru Sheng,
• Errui Li and
• Feihe Huang

Beilstein J. Org. Chem. 2020, 16, 2954–2959, doi:10.3762/bjoc.16.245

• in the solid state. From single crystal X-ray diffraction, the linear guest molecules thread into cyclic pillar[4]arene[1]quinone host molecules in the solid state, stabilized by CH∙∙∙π interactions and hydrogen bonds. The bromine atoms at the periphery of the guest molecule provide convenience for

• maximum. This also indicated that the interactions between H and G were weak. Conclusion In summary, we constructed novel pseudorotaxanes based on a pillar[4]arene[1]quinone and 1,10-dibromodecane. Single crystal X-ray diffraction analysis showed an alkane molecule threaded into the cavities of two pillar

Regioselective synthesis of heterocyclic N-sulfonyl amidines from heteroaromatic thioamides and sulfonyl azides

• Vladimir Ilkin,
• Vera Berseneva,
• Tetyana Beryozkina,
• Tatiana Glukhareva,
• Lidia Dianova,
• Wim Dehaen,
• Eugenia Seliverstova and
• Vasiliy Bakulev

Beilstein J. Org. Chem. 2020, 16, 2937–2947, doi:10.3762/bjoc.16.243

• the heterocycle the N-sulfonyl amidines exist in either E- or Z-isomeric forms. Experimental X-ray diffraction study X-ray analyses were accomplished on an Xcalibur 3 diffractometer using the standard procedure (graphite-monochromated Mo Kα irradiation, ω-scanning with step 1o, T = 295(2) K (see

Ultrasound-assisted Strecker synthesis of novel 2-(hetero)aryl-2-(arylamino)acetonitrile derivatives

• Emese Gal,
• Luiza Gaina,
• Hermina Petkes,
• Alexandra Pop,
• Castelia Cristea,
• Gabriel Barta,
• Dan Cristian Vodnar and
• Luminiţa Silaghi-Dumitrescu

Beilstein J. Org. Chem. 2020, 16, 2929–2936, doi:10.3762/bjoc.16.242

• precipitated from the reaction mixture in crystalline form as depicted by scanning electron microscopy (SEM) analysis. The single crystal X-ray diffraction analysis disclosed the arrangement of the α-(arylamino)acetonitrile molecules in the aggregated crystalline state as a racemic mixture. The mutagenic

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• particular binding mode. However, it was shown by X-ray diffraction analysis of the G4-DNA-bound ligand 1e3 that the berberine unit binds to quadruplex DNA by π-stacking with the 3’-end quartet in a similar mode as the parent berberine; however, in the case of 1e3 the aryl-substituents of the side chain are

Synthesis of purines and adenines containing the hexafluoroisopropyl group

• Viacheslav Petrov,
• Rebecca J. Dooley,
• Alexander A. Marchione,
• Elizabeth L. Diaz,
• Brittany S. Clem and
• William Marshall

Beilstein J. Org. Chem. 2020, 16, 2739–2748, doi:10.3762/bjoc.16.224

• with hexane). Pure 2a was isolated after recrystallization from hexane (see Experimental section), and the structure was established by X-ray diffraction (Figure 1). 4-Azabenzimidazole (3) reacted with tetrakis(trifluoromethyl)-1,3-dithietane (1) under similar conditions, with the formation of the two

• isomeric products 3a and 3b (Scheme 2). The major isomer 3a was isolated in a pure form, and the structure was confirmed by X-ray diffraction. It should be pointed out that the 19F NMR spectra of the two isomers were very different. While the resonance corresponding to the CH(CF3)2 group in the spectrum of

• in the formation of two regioisomers, 4a and 4b (Scheme 3). In this context, the isomers 4a and 4b were separated by column chromatography (see Experimental section), and the structure of both was established by X-ray diffraction. In the 19F NMR spectra of both isomers 4a and 4b, the resonances

A heterobimetallic tetrahedron from a linear platinum(II)-bis(acetylide) metalloligand

• Matthias Hardy,
• Marianne Engeser and
• Arne Lützen

Beilstein J. Org. Chem. 2020, 16, 2701–2708, doi:10.3762/bjoc.16.220

• succeed to obtain single crystals of our metallosupramolecular assemblies that were suitable for single-crystal X-ray diffraction experiments. Therefore, we generated energy-minimized gas phase structures of 4, employing a force-field approach using the GFN2-xTB approach recently established to model