[2 + 1] Cycloaddition reactions of fullerene C₆₀ based on diazo compounds

• Yuliya N. Biglova

Beilstein J. Org. Chem. 2021, 17, 630–670, doi:10.3762/bjoc.17.55

• butyric acid 209. Based on this, fullerene dimer 210 with four hydrogen bonds having a very high dimerization constant was obtained (Scheme 43). Diethyl 4-oxopimelate was used as the precursor of polymer 213. The former was converted via diacid 211 to the target methanofullerene 212, the solution of which

• synthetic route to conjugates of C60 with cinnamaldehyde 206 and with chalcone 207. The synthetic route to conjugate C60 with a 2-nitrocinnamyl group. The synthetic route to a C60 dimer connected through a highly directional fourfold hydrogen bonding motif. The synthetic route to quadruple hydrogen‐bonded

Valorisation of plastic waste via metal-catalysed depolymerisation

• Francesca Liguori,
• Carmen Moreno-Marrodán and
• Pierluigi Barbaro

Beilstein J. Org. Chem. 2021, 17, 589–621, doi:10.3762/bjoc.17.53

Amino- and polyaminophthalazin-1(2H)-ones: synthesis, coordination properties, and biological activity

• Zbigniew Malinowski,
• Emilia Fornal,
• Agata Sumara,
• Renata Kontek,
• Karol Bukowski,
• Beata Pasternak,
• Dariusz Sroczyński,
• Joachim Kusz,
• Magdalena Małecka and
• Monika Nowak

Beilstein J. Org. Chem. 2021, 17, 558–568, doi:10.3762/bjoc.17.50

• unit. Their geometry was fully optimized in vacuum using the DFT method with the crystal structure coordinates as the input geometry (optimized at the CAM-B3LYP/6–311++G(d,p)/LanL2DZ(Cu) level of theory). However, due to the convergence failure during the geometry optimization of the dimer of molecules

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• upon interaction. These results demonstrated that the site-specific 19F signal of 5-FTrp187 could be directly employed as a reliable reporter to monitor the monomer/dimer exchange dynamics. Moreover, it could also be employed to characterize the ED helix–helix dimer interface in more detail by means of

• boosted the overall spectral sensitivity even when minimal protein concentrations were employed. The structural dynamics of the Myc-Max dimer formation were then evaluated by using intermolecular PREs between 19F‐Myc and three differently paramagnetic spin labelled MTSL ([(1-oxyl-2,2,5,5-tetramethyl-Δ3

Direct synthesis of anomeric tetrazolyl iminosugars from sugar-derived lactams

• Michał M. Więcław and
• Bartłomiej Furman

Beilstein J. Org. Chem. 2021, 17, 115–123, doi:10.3762/bjoc.17.12

• (cyclooctene)iridium dimer ([Ir(coe)2Cl]2) can act as the catalyst in combination with Et2SiH2 [15]. Surprisingly, they were able to obtain imines as well as amines using this methodology. Based on the works of Nagashima [16], an iridium-based protocol for tertiary amides was introduced by Dixon [17][18][19

Molecular basis for protein–protein interactions

• Brandon Charles Seychell and
• Tobias Beck

Beilstein J. Org. Chem. 2021, 17, 1–10, doi:10.3762/bjoc.17.1

• -dependence is β-lactoglobulin. The protein forms a dimer at a low pH value, while it is a tetramer at a higher pH value [51]. In a salt-dependent binding mechanism, the binding interaction occurs due to the changes in the solvent exposure of the charges in the contact residues before and after binding. This

• . Different residues at the ‘a’ and ‘d’ positions give rise to different oligomeric states, with the yeast transcription factor GCN4 being a perfect example of this. GCN4 has isoleucine as ‘a’ and leucine as ‘d’ and forms a dimer (Figure 2b). When isoleucine and leucine are swapped via mutagenesis, a tetramer

Chiral anion recognition using calix[4]arene-based ureido receptors in a 1,3-alternate conformation

• Tereza Horáčková,
• Jan Budka,
• Vaclav Eigner,
• Wen-Sheng Chung,
• Petra Cuřínová and
• Pavel Lhoták

Beilstein J. Org. Chem. 2020, 16, 2999–3007, doi:10.3762/bjoc.16.249

• same time, the carbonyl groups from the neighbouring receptor urea moieties interacted with the C–H bonds of the DMSO methyl group (the C=O···H–C distances were 2.486 and 2.452 Å), thus forming the calixarene dimer with a head-to-tail mutual orientation. The overall supramolecular binding motif was

Synthesis of purines and adenines containing the hexafluoroisopropyl group

• Viacheslav Petrov,
• Rebecca J. Dooley,
• Alexander A. Marchione,
• Elizabeth L. Diaz,
• Brittany S. Clem and
• William Marshall

Beilstein J. Org. Chem. 2020, 16, 2739–2748, doi:10.3762/bjoc.16.224

• formation of a new derivative of caffeine. Keywords: adenine; caffeine; cyclic dimer of hexafluorothioacetone; hexafluoroisopropyl group; purine; 2,2,4,4-tetrakis(trifluoromethyl)-1,3-dithietane; theophylline; Introduction Despite significant progress in the last 20–30 years, the selective introduction of

Synthesis of 4-substituted azopyridine-functionalized Ni(II)-porphyrins as molecular spin switches

• Jannis Ludwig,
• Tobias Moje,
• Fynn Röhricht and
• Rainer Herges

Beilstein J. Org. Chem. 2020, 16, 2589–2597, doi:10.3762/bjoc.16.210

• only the cis isomer coordinates to the Ni(II) for steric reasons and 3. intermolecular coordination. At higher concentrations dimer formation or coordination oligomers between trans record player molecules occurs [35]. To compare the new molecules (1f–j) with previous systems (1a–d), the switching

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• exhibits an emission maximum peak at 329 nm upon excitation at 294 nm. This emission band is probably due to the formation of the ground-state dimer by interaction between the benzene rings upon excitation or excimer emission caused by the interaction between the aromatic rings [41][43]. As the

A new method for the synthesis of diamantane by hydroisomerization of binor-S on treatment with sulfuric acid

• Rishat I. Aminov and
• Ravil I. Khusnutdinov

Beilstein J. Org. Chem. 2020, 16, 2534–2539, doi:10.3762/bjoc.16.205

• of diamond-like hydrocarbons, diamantane, in 65% yield by hydroisomerization of the norbornadiene dimer, endo-endo-heptacyclo[8.4.0.02,12.03,8.04,6.05,9.011,13]tetradecane (binor-S) on treatment with concentrated sulfuric acid (98%). In the presence of H2SO4 of lower concentration (75–80%), the

• compounds for the preparation of diamantane are three isomeric polycyclic hydrocarbons C14H20 3а–с, which are obtained by hydrogenation of the norbornadiene dimer, heptacyclo[8.4.0.02,12.03,8.04,6.05,9.011,13]tetradecane (binor-S, 2). Binor-S is hydrogenated in the presence of a platinum catalyst (Н2PtCl6

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• interaction between the 14-3-3 protein and its phosphorylated cargo proteins [42][44][45]. Another ligand with just one GCP unit targets the central pore of the 14-3-3 dimer [43]. Unfortunately, these systems have not yet been studied by NMR. However, several other 14-3-3 inhibitors and stabilizers serve as

Hierarchically assembled helicates as reaction platform – from stoichiometric Diels–Alder reactions to enamine catalysis

• David Van Craen,
• Jenny Begall,
• Johannes Großkurth,
• Leonard Himmel,
• Oliver Linnenberg,
• Elisabeth Isaak and
• Markus Albrecht

Beilstein J. Org. Chem. 2020, 16, 2338–2345, doi:10.3762/bjoc.16.195

• of the stereoselectivity of the Diels–Alder reaction. In THF the stereochemically locked dimer of the hierarchical helicate was present. Here stereoselectivity was turned on. On the other hand, the highly dynamic and fast diastereomerizing/epimerizing monomer was the major species in DMF switching

• or rigid chiral ligands. In addition, a solvent screening was performed in which solvents were used which favor the dimer. This is imminent for good enantioselectivities because the presence of a high amount of stereolabile monomer switches off the selectivity [13]. Solvent dependence Initially the

Synthetic approaches to bowl-shaped π-conjugated sumanene and its congeners

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2020, 16, 2212–2259, doi:10.3762/bjoc.16.186

• have attempted various combinations of Ti(IV) and reducing agents but Cp2TiCl2 with Zn powder provided the better results compared to the other combinations [14][40]. Additionally, they prepared benzyl–benzyl coupled sumanene dimer 48 by means of oxidative dimerization via sumanenyl monoanion

• (DFT) calculations. As we are aware that if the carbene formed is a singlet then a C–H bond inserted product is predominating whereas if the dimer is the major product along with the minor C–H bond inserted product then the triplet carbene is generated. During their study, they obtained the C–H

• inserted product 61 in 65% along with the dimer 62 in 18% yield with cyclohexane, confirming that the reaction precedes via the singlet state, albeit it was a triplet species in the ground-state. They further reported the applicability of the carbene precursor 59 by reacting it with different thiocarbonyl

Isolation and structure determination of a tetrameric sulfonyl dilithio methandiide in solution based on crystal structure analysis and ⁶Li/¹³C NMR spectroscopic data

• Jürgen Vollhardt,
• Hans Jörg Lindner and
• Hans-Joachim Gais

Beilstein J. Org. Chem. 2020, 16, 2057–2063, doi:10.3762/bjoc.16.172

• –dimer equilibrium. Bonding of the dianionic C atoms 6Li NMR spectroscopy of tetramer 2a-I had revealed a dianionic carbon atom, C1B, carrying two different Li atoms, a bonding situation which is reflected by the two different 6Li,13C coupling constants. It was thus of particular interest to see whether

The biomimetic synthesis of balsaminone A and ellagic acid via oxidative dimerization

• Sharna-kay Daley and
• Nadale Downer-Riley

Beilstein J. Org. Chem. 2020, 16, 2026–2031, doi:10.3762/bjoc.16.169

• aqueous conditions to prevent complexation of the reagent and the starting material. Of the Lewis acids used, stannic chloride proved to be the most effective oxidant for dimerization (Table 1). However, the hypervalent iodine reagents PIFA and PIDA gave better results overall, affording dimer 18 in 63

Pauson–Khand reaction of fluorinated compounds

• Jorge Escorihuela,
• Daniel M. Sedgwick,
• Alberto Llobat,
• Mercedes Medio-Simón,
• Pablo Barrio and
• Santos Fustero

Beilstein J. Org. Chem. 2020, 16, 1662–1682, doi:10.3762/bjoc.16.138

• could not be detected in the crude reaction mixtures. Instead, the major isolated species was dimer 45. However, the fact that 45 bears the cyclopentenone core suggests that the desired PKR does indeed take place, albeit as an intermediate before a secondary transformation to form the final dimer

Rearrangement of o-(pivaloylaminomethyl)benzaldehydes: an experimental and computational study

• Csilla Hargitai,
• Györgyi Koványi-Lax,
• Tamás Nagy,
• Péter Ábrányi-Balogh,
• András Dancsó,
• Gábor Tóth,
• Judit Halász,
• Angéla Pandur,
• Gyula Simig and
• Balázs Volk

Beilstein J. Org. Chem. 2020, 16, 1636–1648, doi:10.3762/bjoc.16.136

• )benzaldehydes under acidic conditions resulted in the formation of the regioisomeric aldehydes and/or dimer-like products. Detailed NMR studies and single-crystal X-ray measurements supported the structure elucidation of the compounds. DFT calculations were also carried out to clarify the reaction mechanism

• , and to explain the observed product distributions and structural variances in the dimer-like products. Studies on the transformation of unsubstituted o-(pivaloylaminomethyl)benzaldehyde under similar conditions were presented as well. Keywords: DFT calculations; NMR; reaction mechanism; rearrangement

• , gave isomeric aldehyde 2a (48%) and the dimer-like racemic product 3a (11%). Both transformations were rationalized by the intermediacy of the isoindole 4a (Scheme 1). The formation of aldehyde 2a can be explained by a protonation of the ring tautomer 1a, followed by an acid-catalyzed water elimination

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• available iodide 29. The formation of compound 30 proceeded in 21% yield, with alcohol 31 and dimer 32 also formed in 20% and 5% yield, respectively (Scheme 9). Indeed, when iodide 29 was replaced with bromide 33 and tosylate 34 no formation of compound 30 was observed, with alcohol 31 and dimer 32

• accounting for the major products. Acidic deprotection of phosphoramidate 30 afforded amine (R)-23 in 92% yield in >99% ee, offering an alternative route to the Horner–Wadsworth–Emmons-based approach. The mechanism of the formation of alcohol 31 and dimer 32 was not fully explored although it is likely to

• occur via a radical pathway. When iodide 29 was replaced by a superior oxidant in 1,2-dibromoethane, formation of dimer 32 increased (17% isolated yield). This supports the previously reported proposals that dimerisation occurs via single-electron oxidation of the 2-picolyl anion by the halide

A dynamic combinatorial library for biomimetic recognition of dipeptides in water

• Florian Klepel and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2020, 16, 1588–1595, doi:10.3762/bjoc.16.131

• the parallel dimer of CHC (p(CHC)2), which binds two molecules of the neurotransmitter N-acetylneuraminic acid (NANA) in a cooperative fashion (K1 = 143, K2 = 5.1 × 103 M−1). Recently we rationalized that since our peptide building blocks consist of the same binding motifs as binding proteins (amines

• combination of cyclic tripeptide dimer. Each peptide dimer has two peaks because of the two constitutional isomers. Note that intensities between different compounds are not directly comparable in mass spectrometry. Upon addition of certain templates, notable changes were found in the chromatograms of the CFC

• by co-elution with the FF template. This is a not an issue for the YY containing sample as the template peak maximum lays between the first and second tripeptide dimer peak. We therefore concluded that the binding affinities of the receptor template pairs should be FF > YY > AA. In order to

Oxime radicals: generation, properties and application in organic synthesis

• Igor B. Krylov,
• Stanislav A. Paveliev,
• Alexander S. Budnikov and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2020, 16, 1234–1276, doi:10.3762/bjoc.16.107

• radicals with the formation of a C–O bond (dimer 4b, oxidation of diisopropyl oxime 1b), an O–N bond (dimer 4c, oxidation of benzophenone oxime 1c), and an N–N bond (dimer 4d, oxidation of benzaldoxime 1d, see also [58]) was observed. As a rule, the initial dimers of iminoxyl radicals are unstable, which

• established that the studied iminoxyl radicals reversibly dimerized in the solution. For sterically unhindered dialkyliminoxyl radicals, the radical–dimer equilibrium was quickly reached, shifted toward the dimer, while a first-order decay kinetics of was observed for the iminoxyl radical. For sterically

• hindered tert-butylmethyliminoxyl and diisopropyliminoxyl radicals, as well as for diaryl and alkylaryliminoxyl radicals, the radical–dimer equilibrium was reached slowly, it was shifted toward the free radical, and a second-order decay kinetics was observed. The first synthesized long-lived iminoxyl

Towards triptycene functionalization and triptycene-linked porphyrin arrays

• Gemma M. Locke,
• Keith J. Flanagan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2020, 16, 763–777, doi:10.3762/bjoc.16.70

• , this work reports the first example of a linearly connected porphyrin dimer, linked through the bridgehead carbons of triptycene. Symmetric and unsymmetric examples of these complexes are demonstrated and single crystal X-ray analysis of an unsymmetrically substituted porphyrin dimer highlights the

• material was purified via column chromatography using silica gel. The BODIPY dimer 7 was prepared using 6 [38] and was obtained as a fluorescent orange solution or as pink-orange crystals in a 30% yield. Similarly, the Pd-catalyzed Sonogashira cross-coupling reaction [39] was successful for the reaction

• . In an effort to synthesize an unsymmetrically substituted porphyrin dimer, triptycene 12 was utilized (Scheme 2). Firstly, the zinc porphyrin 13 [41] was coupled to triptycene 12 using Sonogashira methods that were previously successfully employed with compound 11. The desired compound 14 could be

Design and synthesis of diazine-based panobinostat analogues for HDAC8 inhibition

• Sivaraman Balasubramaniam,
• Sajith Vijayan,
• Liam V. Goldman,
• Xavier A. May,
• Kyra Dodson,
• Sweta Adhikari,
• Fatima Rivas,
• Davita L. Watkins and
• Shana V. Stoddard

Beilstein J. Org. Chem. 2020, 16, 628–637, doi:10.3762/bjoc.16.59

• Biotek Synergy HTX multimodal plate reader after incubation for 30 minutes. Preparation of the HDAC8 receptor for docking The HDAC8 crystal structure (protein database pdb: 1W22) [32] was utilized as the docking receptor for all compounds. This receptor is crystalized as a dimer thus only the A chain was

Copper-promoted/copper-catalyzed trifluoromethylselenolation reactions

• Clément Ghiazza and
• Anis Tlili

Beilstein J. Org. Chem. 2020, 16, 305–316, doi:10.3762/bjoc.16.30

• ]. Noteworthy, depending on the nature of the bidentate ligand used, the corresponding copper complex could be isolated as monomer or dimer, and both were air-stable. Among the new complexes, the reactivity of [(bpy)CuSeCF3]2 in trifluoromethylselenolations was thoroughly investigated using a large panel of

Reversible photoswitching of the DNA-binding properties of styrylquinolizinium derivatives through photochromic [2 + 2] cycloaddition and cycloreversion

• Sarah Kölsch,
• Heiko Ihmels,
• Jochen Mattay,
• Norbert Sewald and
• Brian O. Patrick

Beilstein J. Org. Chem. 2020, 16, 111–124, doi:10.3762/bjoc.16.13

• Information File 1). However, it was observed that further irradiation of the nitro-substituted derivative 3d furnished the dimer in acetonitrile, as shown by the development of the characteristic cyclobutane protons at 4.85–4.95 ppm. In contrast, the NMR-spectroscopic analysis in D2O showed that the

• . Supporting Information File 1) that may have been followed by a [2 + 2] photodimerization (Scheme 2). However, it is difficult to explain why the photocycloaddition of the Z-isomers Z-3b and Z-3c led exclusively to the dimer, because such a selectivity has not been reported so far for (Z)-stilbenes. On the

• cyclobutane 4b at 315 nm in H2O, the monomer 3b formed, as indicated by the development of its characteristic absorption band (Figure 7B). After 30 min, the reaction was almost complete, however, dimer 4b still remained in solution in the photostationary state. Interactions of the photodimer 4b with DNA The