An overview of the cycloaddition chemistry of fulvenes and emerging applications

• Ellen Swan,
• Kirsten Platts and
• Anton Blencowe

Beilstein J. Org. Chem. 2019, 15, 2113–2132, doi:10.3762/bjoc.15.209

• reactivity and mechanisms of action. Dynamic combinatorial chemistry Dynamic combinatorial chemistry (DCC) is an emerging field with promising applications in drug discovery. DCC involves the generation of new molecules via reversible reactions of simple building blocks, referred to as a dynamic

Characterization of two new degradation products of atorvastatin calcium formed upon treatment with strong acids

• Jürgen Krauß,
• Monika Klimt,
• Markus Luber,
• Peter Mayer and
• Franz Bracher

Beilstein J. Org. Chem. 2019, 15, 2085–2091, doi:10.3762/bjoc.15.206

• elucidated by NMR and crystal structure analysis. The bridged tricyclic product 6 was formed with concentrated hydrochloric acid, whereas lactone 7 resulted from treatment with concentrated sulfuric acid. We propose mechanisms for the formation of the novel artefacts 6 and 7 here. But it has to be mentioned

Genome mining in Trichoderma viride J1-030: discovery and identification of novel sesquiterpene synthase and its products

• Xiang Sun,
• You-Sheng Cai,
• Yujie Yuan,
• Guangkai Bian,
• Ziling Ye,
• Zixin Deng and
• Tiangang Liu

Beilstein J. Org. Chem. 2019, 15, 2052–2058, doi:10.3762/bjoc.15.202

• have recently been characterised; these terpenoids exhibit diverse complex structures and uncommon catalytic mechanisms [20]. However, a limited number of sesquiterpenes have been characterised from a few fungal taxa (e.g., trefolane A and sterhirsutins) [21]. Trichoderma viride is a filamentous fungus

Synthesis of benzo[d]imidazo[2,1-b]benzoselenoazoles: Cs₂CO₃-mediated cyclization of 1-(2-bromoaryl)benzimidazoles with selenium

• Mio Matsumura,
• Yuki Kitamura,
• Arisa Yamauchi,
• Yoshitaka Kanazawa,
• Yuki Murata,
• Tadashi Hyodo,
• Kentaro Yamaguchi and
• Shuji Yasuike

Beilstein J. Org. Chem. 2019, 15, 2029–2035, doi:10.3762/bjoc.15.199

• reaction mechanisms for these syntheses have not been reported. Therefore, we carried out several control experiments to clarify the reaction mechanism (Scheme 2). However, the reaction of 1-phenylbenzimidazole (11) without bromine at the phenyl group with diphenyl diselenide (12a) did not afford the

Isolation and characterisation of irinans, androstane-type withanolides from Physalis peruviana L.

• Annika Stein,
• Dave Compera,
• Bianka Karge,
• Mark Brönstrup and
• Jakob Franke

Beilstein J. Org. Chem. 2019, 15, 2003–2012, doi:10.3762/bjoc.15.196

• without the lactone side chain. We therefore propose that the side-chain cleavage enzyme in withanolide biosynthesis acts at a late stage, using common pathway end products such as 4ß-hydroxywithanolide E (1) as its substrates. Two mechanisms are conceivable for this transformation (Figure 3C): A non

• androstanes. (A) Androstane backbone and androsterone (7) as a typical mammalian sex hormone. Cinedione (8) is the only other fully characterised androwithanolide known. (B) Biosynthesis of androstanes in mammals. (C) Possible cleavage mechanisms involved in androwithanolide biosynthesis in plants. Intrinsic

Synthesis and anion binding properties of phthalimide-containing corona[6]arenes

• Meng-Di Gu,
• Yao Lu and
• Mei-Xiang Wang

Beilstein J. Org. Chem. 2019, 15, 1976–1983, doi:10.3762/bjoc.15.193

• [1][2][11][12]. Moreover, the designed macrocycles are useful molecular tools in the investigation of supramolecular catalysis and reaction mechanisms [1][2][13][14][15][16]. Heteracalixaromatics or heteroatom-bridged calix(het)arenes [17][18][19][20][21] are synthetic macrocycles composed of

Reactions of 2-carbonyl- and 2-hydroxy(or methoxy)alkyl-substituted benzimidazoles with arenes in the superacid CF₃SO₃H. NMR and DFT studies of dicationic electrophilic species

• Dmitry S. Ryabukhin,
• Alexey N. Turdakov,
• Natalia S. Soldatova,
• Mikhail O. Kompanets,
• Alexander Yu. Ivanov,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2019, 15, 1962–1973, doi:10.3762/bjoc.15.191

• -arylmethyl-substituted benzimidazoles, in yields up to 90%. The reaction intermediates, protonated species derived from starting benzimidazoles in TfOH, were thoroughly studied by means of NMR and DFT calculations and plausible reaction mechanisms are discussed. Keywords: benzimidazoles; cations; Friedel

• ). Summarizing all data obtained by DFT calculations (Table 1) and NMR studies (Table 2) of intermediate cations generated from benzimidazoles 1–8 in TfOH, and their reactions with arenes (Tables 3–5, Scheme 1, and Scheme 2), the following reaction mechanisms are proposed (Scheme 3 and Scheme 4). 2-Carbonyl

Analysis of sesquiterpene hydrocarbons in grape berry exocarp (Vitis vinifera L.) using in vivo-labeling and comprehensive two-dimensional gas chromatography–mass spectrometry (GC×GC–MS)

• Philipp P. Könen and
• Matthias Wüst

Beilstein J. Org. Chem. 2019, 15, 1945–1961, doi:10.3762/bjoc.15.190

• the unlabeled and deuterated compounds, mechanisms for sesquiterpene formation in V. vinifera could be proposed and already known pathways could be confirmed or disproved. For example, the HS-SPME–GC×GC–TOF–MS measurements of fed sample material showed that the tricyclic sesquiterpene hydrocarbons α

• berry exocarp [8]. The biosynthesis of the diverse sesquiterpene structures in V. vinifera is, however, still largely unexplored, especially with respect to the cyclization mechanisms. Studies by Steele et al., Bülow et al., Martin et al. and theoretical studies by Tantillo show the complexity of the

• d2-DOX six deuterium atoms were incorporated at most. This data indicates that the biosynthesis of β-elemene, (+)-valencene and α-guaiene is achieved via germacrene A. Biosynthesis of sesquiterpene hydrocarbons via (E,E)-germacrene B The mechanisms proposed by Steele et al. for the formation of

Inherent atomic mobility changes in carbocation intermediates during the sesterterpene cyclization cascade

• Hajime Sato,
• Takaaki Mitsuhashi,
• Mami Yamazaki,
• Ikuro Abe and
• Masanobu Uchiyama

Beilstein J. Org. Chem. 2019, 15, 1890–1897, doi:10.3762/bjoc.15.184

• diphosphate, IM: intermediate. Quiannulatene is formed by the deprotonation of IM11. Phase (I): 5/12/5 tricycle formation is highlighted in blue. Phase (II): conformational changes and hydrogen shifts are highlighted in orange. Phase (III): ring rearrangements are highlighted in yellow. Reaction mechanisms of

Norbornadiene-functionalized triazatriangulenium and trioxatriangulenium platforms

• Roland Löw,
• Talina Rusch,
• Tobias Moje,
• Fynn Röhricht,
• Olaf M. Magnussen and
• Rainer Herges

Beilstein J. Org. Chem. 2019, 15, 1815–1821, doi:10.3762/bjoc.15.175

• the mechanisms of bulk metal catalysis and open new ways to design new catalytic systems. Towards this end, and following the “platform concept”, we designed a cyano-substituted norbornadiene, which is functionalized with an acetylene spacer on a TATA platform to investigate an eventual “spin

Metal-free mechanochemical oxidations in Ertalyte^® jars

• Andrea Porcheddu,
• Francesco Delogu,
• Lidia De Luca,
• Claudia Fattuoni and
• Evelina Colacino

Beilstein J. Org. Chem. 2019, 15, 1786–1794, doi:10.3762/bjoc.15.172

• grinding mixture [51]. Two different mechanisms have been postulated for similar reactions in homogeneous phase: one occurs under acidic conditions, while the other works better in a basic medium through a cyclic dipolar mechanism (Scheme 2) [52][53]. On the contrary, under ball-milling conditions, it is

The cyclopropylcarbinyl route to γ-silyl carbocations

• Xavier Creary

Beilstein J. Org. Chem. 2019, 15, 1769–1780, doi:10.3762/bjoc.15.170

• will deal with is the so-called “electron-deficient” carbocation, i.e., carbocations 9 (Figure 1) substituted with electron-withdrawing groups E [21]. Many studies have shown that such cations can indeed be generated and that they can derive stabilization by a variety of mechanisms. Chief among these

Recent advances on the transition-metal-catalyzed synthesis of imidazopyridines: an updated coverage

• Gagandeep Kour Reen,
• Ashok Kumar and
• Pratibha Sharma

Beilstein J. Org. Chem. 2019, 15, 1612–1704, doi:10.3762/bjoc.15.165

• mechanisms, i.e., a Chan–Lam coupling and an Ullmann coupling. The Chan–Lam coupling involved a C–N bond formation (intermediate I, 84) which then entered into the Ullmann coupling to undergo intramolecular cyclization to form final product 78 and release Cu(III) to Cu(I) by reductive elimination. In this

Transient and intermediate carbocations in ruthenium tetroxide oxidation of saturated rings

• Manuel Pedrón,
• Laura Legnani,
• Maria-Assunta Chiacchio,
• Pierluigi Caramella,
• Tomás Tejero and
• Pedro Merino

Beilstein J. Org. Chem. 2019, 15, 1552–1562, doi:10.3762/bjoc.15.158

• analysis). Energy profile for the oxidation of R4 and R5. Relative energies, calculated at the B3LYP-d3bj/Def2TZVP/cpcm=water level of theory, are given in kcal/mol. Optimized (B3LYP-d3bj/Def2SVP/cpcm=water) transition structures for the oxidation of R4 and R5. Oxidation of alkanes with RuO4. Mechanisms

Superelectrophilic carbocations: preparation and reactions of a substrate with six ionizable groups

• Sean H. Kennedy,
• Makafui Gasonoo and
• Douglas A. Klumpp

Beilstein J. Org. Chem. 2019, 15, 1515–1520, doi:10.3762/bjoc.15.153

• explained by mechanisms involving highly ionized intermediates. It is proposed that compound 9 initially reacts in excess superacid to give the tetracationic species 12 (Scheme 4). Protonation of the hydroxy groups leads to immediate ionization and formation of the carbocation centers. For related

• from diol 9. Proposed mechanisms leading to products 10 and 11. Products and relative yields from the reaction of alcohol 18 with CF3SO3H and C6H6 [12]. Comparison of superelectrophilic carbocations (3–5 and 14) and their chemistry. DFT calculated relative energies of pentacations 16 and 21 [14

Different reactivity of phosphorylallenes under the action of Brønsted or Lewis acids: a crucial role of involvement of the P=O group in intra- or intermolecular interactions at the formation of cationic intermediates

• Stanislav V. Lozovskiy,
• Alexander Yu. Ivanov and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2019, 15, 1491–1504, doi:10.3762/bjoc.15.151

• intermolecular hydroarylation of allenes bearing electron-withdrawing substituents. Plausible reaction mechanisms have been proposed on the basis of the investigated reactions, and NMR analysis and DFT studies of the intermediate cationic species. Keywords: aluminum chloride; cation; intermediate

• formed during methanolysis of 19 and 21 consequently. In accordance with both mechanisms A and B, yields of indanes 12 should be increased for substrates having electron-donating groups, Ar. Indeed, the highest yields of indanes 12 were achieved for the reactions of allene 1a with the electron-rich

• electronic characteristics (global electrophilicity indexes ω, natural charges (NBO) and atomic orbital contributions into LUMO) of species 16 and 22 as key intermediates from mechanisms A and B. The calculations reveal that both charge and orbital factors coincide in electrophilic reactivity of carbon C3 in

Understanding the unexpected effect of frequency on the kinetics of a covalent reaction under ball-milling conditions

• Ana M. Belenguer,
• Adam A. L. Michalchuk,
• Giulio I. Lampronti and
• Jeremy K. M. Sanders

Beilstein J. Org. Chem. 2019, 15, 1226–1235, doi:10.3762/bjoc.15.120

• mechanisms and driving forces which underpin mechanochemical transformations and supramolecular reactions remain poorly understood and are subject to considerable debate [2][4][7][8][14][17][18][19][20][21][22][23][24][25]. The future successful academic and industrial application of these methods depends on

• induce covalent bond formation, conducted by mechanochemistry [46]. A large induction period can be explained by two mechanisms: (1) time required for mass transport (mixing), or (2) time required for the accumulation of energy. While mass transport surely plays some role in the observed induction period

Phylogenomic analyses and distribution of terpene synthases among Streptomyces

• Lara Martín-Sánchez,
• Kumar Saurabh Singh,
• Mariana Avalos,
• Gilles P. van Wezel,
• Jeroen S. Dickschat and
• Paolina Garbeva

Beilstein J. Org. Chem. 2019, 15, 1181–1193, doi:10.3762/bjoc.15.115

• 13350 [35][36] and their enzymatic mechanisms for the cyclisation of FPP have been investigated [35][37][38][39]. Cyclooctat-9-en-7-ol (7) and isoafricanol (8) synthases are mainly characteristic for a group of very closely related species in the phylogenomic clade depicted in red in Figure 1, with two

Unexpected polymorphism during a catalyzed mechanochemical Knoevenagel condensation

• Sebastian Haferkamp,
• Andrea Paul,
• Adam A. L. Michalchuk and
• Franziska Emmerling

Beilstein J. Org. Chem. 2019, 15, 1141–1148, doi:10.3762/bjoc.15.110

• reaction environment. It was subsequently demonstrated how a combination of different in situ methods can provide more thorough investigation of mechanochemical reaction mechanisms [14][15][16]. Of particular benefit to synthetic reactions, such as C–C bond formation [17][18], the use of Raman spectroscopy

Mechanistic investigations on multiproduct β-himachalene synthase from Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 1008–1019, doi:10.3762/bjoc.15.99

• potential was also exploited in the preparation of sesquiterpene isotopomers, which provided insights into their EIMS fragmentation mechanisms. Keywords: enzyme mechanisms; isotopes; mass spectrometry; promiscuity; terpenes; Introduction The organic chemist usually prefers to work with pure compounds

• provides access to labelled sesquiterpenes for EIMS fragmentation studies Since HcS produces a mixture of structurally interesting sesquiterpenes, its synthetic abilities were also exploited to study EIMS fragmentation mechanisms. Therefore, all fifteen singly-13C labelled FPP isotopomers, either obtained

• ). Possible EI-fragmentation mechanisms connected to them are discussed in Schemes S1–S3 (Supporting Information File 1). Conclusion In summary, a new terpene synthase from C. arvum was characterised as a multiproduct (+)-β-himachalene synthase. Accepting GPP, FPP and GGPP, HcS is a promiscuous enzyme, whose

SO₂F₂-mediated transformation of 2'-hydroxyacetophenones to benzo-oxetes

• Revathi Lekkala,
• Ravindar Lekkala,
• Balakrishna Moku,
• K. P. Rakesh and
• Hua-Li Qin

Beilstein J. Org. Chem. 2019, 15, 976–980, doi:10.3762/bjoc.15.95

• proposed to be E-configured. However, the exact configuration was not confirmed [40]. Two possible reaction mechanisms were proposed for this SO2F2-mediated transformation of 2'-hydroxyacetophenones to benzo-oxetes (Scheme 3). The first mechanism commences with the deprotonation of 2'-hydroxyacetophenone 1

• mmol, 3.0 equiv) in DMSO (2.0 mL) was stirred at 90 ° C under a SO2F2 atmosphere (balloon) for 20 h. Yields refer to isolated yields. aReaction performed at 50 °C. Two proposed reaction mechanisms. B = base. Screening and optimization of the reaction conditions.a Supporting Information Supporting

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• ; mechanochemistry; self-assembly; solvent-free; supramolecular; Introduction In living systems an important aspect is to create complex functional molecules from simpler units by following biomolecular mechanisms [1]. The biological assemblies for living beings are developed from processes of spontaneous self

Strong hyperconjugative interactions limit solvent and substituent influence on conformational equilibrium: the case of cis-2-halocyclohexylamines

• Camila B. Francisco,
• Cleverton S. Fernandes,
• Ulisses Z. de Melo,
• Roberto Rittner,
• Gisele F. Gauze and
• Ernani A. Basso

Beilstein J. Org. Chem. 2019, 15, 818–829, doi:10.3762/bjoc.15.79

• observed, and this behavior suggests that other effects can be acting. So, theoretical calculations were performed in order to understand which mechanisms control the conformational preference of these compounds. Theoretical study Conformer energy The potential energy surface (PES) for the dihedral C2–C1–N

Stereochemical investigations on the biosynthesis of achiral (Z)-γ-bisabolene in Cryptosporangium arvum

• Jan Rinkel and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2019, 15, 789–794, doi:10.3762/bjoc.15.75

• ; carbocation chemistry; enzyme mechanisms; nerolidyl diphosphate; terpenes; Introduction Given the enormous impact of chirality within biomolecules for all forms of life, it is fascinating to see how nature is able to maintain and reproduce stereochemical information. This concept largely involves the

• in the biosynthesis of the achiral sesquiterpene (Z)-γ-bisabolene (5) by a TS from a soil bacterium. Results and Discussion Functional characterisation of a bacterial (Z)-γ-bisabolene synthase Within our efforts to characterise bacterial TSs with new functions and mechanisms, a TS (WP_035857999) from

• stereochemistry (anti-SN2’ reaction), which is favoured for a concerted process and is also discussed for other cyclisation mechanisms [24][25][26], the four theoretically possible options for the BbS cyclisation mechanism are narrowed down to two possibilities: Either the reaction takes place via (R)-NPP

Tuning the stability of alkoxyisopropyl protection groups

• Zehong Liang,
• Henna Koivikko,
• Mikko Oivanen and
• Petri Heinonen

Beilstein J. Org. Chem. 2019, 15, 746–751, doi:10.3762/bjoc.15.70

• aware of the fact that hydrolysis of acetals has been widely studied over decades and the mechanisms are commonly agreed. However, it appeared that more comprehensive and systematic data are needed to allow the analysis of structural effects in detail. Results and Discussion Five acetone-based acetal

• of acetal synthesis. We also prepared the corresponding derivative 8b of thymidine and studied its hydrolytic stability separately. This is of some interest for discussion of mechanisms of acetal hydrolysis, since the vinyl ether intermediate 8b could probably be formed on the pathway shown in the