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Search for "X-ray crystal structure" in Full Text gives 197 result(s) in Beilstein Journal of Organic Chemistry.

A study of the photochemical behavior of terarylenes containing allomaltol and pyrazole fragments

  • Constantine V. Milyutin,
  • Andrey N. Komogortsev,
  • Boris V. Lichitsky and
  • Valeriya G. Melekhina

Beilstein J. Org. Chem. 2022, 18, 588–596, doi:10.3762/bjoc.18.61

Graphical Abstract
  • synthesized products were confirmed by X-ray diffraction. 1H NMR monitoring of the photoreaction of compound 12a under UV irradiation (365 nm) in DMSO-d6 solution. The X-ray crystal structure of compound 15a. The X-ray crystal structure of compound 15m. The X-ray crystal structure of compound 18
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Published 27 May 2022

Efficient and regioselective synthesis of dihydroxy-substituted 2-aminocyclooctane-1-carboxylic acid and its bicyclic derivatives

  • İlknur Polat,
  • Selçuk Eşsiz,
  • Uğur Bozkaya and
  • Emine Salamci

Beilstein J. Org. Chem. 2022, 18, 77–85, doi:10.3762/bjoc.18.7

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  • , in contrast to the formation of the six-membered lactone 20. In addition, these novel compounds synthesized may be used as intermediates to design pharmacological tools. Examples of natural products containing β-amino acids. The X-ray crystal structure of 10. Solvent-corrected relative free energy
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Published 06 Jan 2022

Bifunctional thiourea-catalyzed asymmetric [3 + 2] annulation reactions of 2-isothiocyanato-1-indanones with barbiturate-based olefins

  • Jiang-Song Zhai and
  • Da-Ming Du

Beilstein J. Org. Chem. 2022, 18, 25–36, doi:10.3762/bjoc.18.3

Graphical Abstract
  • scaffold. Selected examples of bioactive spirobarbiturates. The screened organocatalysts. X-ray crystal structure of 3ae (displacement ellipsoids are drawn at the 50% probability level). Known strategies and conceptual advance of this contribution. Substrate scope of 2-isothiocyanato-1-indanones. The
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Published 04 Jan 2022

The PIFA-initiated oxidative cyclization of 2-(3-butenyl)quinazolin-4(3H)-ones – an efficient approach to 1-(hydroxymethyl)-2,3-dihydropyrrolo[1,2-a]quinazolin-5(1H)-ones

  • Alla I. Vaskevych,
  • Nataliia O. Savinchuk,
  • Ruslan I. Vaskevych,
  • Eduard B. Rusanov,
  • Oleksandr O. Grygorenko and
  • Mykhailo V. Vovk

Beilstein J. Org. Chem. 2021, 17, 2787–2794, doi:10.3762/bjoc.17.189

Graphical Abstract
  • +, 217.0972; found, 217.0973. Pyrrolo[1,2-a]quinazoline derivatives – analogs of vasicinone alkaloids and their biological activity. X-ray crystal structure of compound 6f. Synthetic approaches to 2,3-dihydropyrrolo[1,2-a]quinazolin-5(1H)-one derivatives. Plausible mechanism for the formation of 6. Synthesis
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Letter
Published 25 Nov 2021

Development of N-F fluorinating agents and their fluorinations: Historical perspective

  • Teruo Umemoto,
  • Yuhao Yang and
  • Gerald B. Hammond

Beilstein J. Org. Chem. 2021, 17, 1752–1813, doi:10.3762/bjoc.17.123

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Review
Published 27 Jul 2021

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

  • Nikita Brodyagin,
  • Martins Katkevics,
  • Venubabu Kotikam,
  • Christopher A. Ryan and
  • Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

Graphical Abstract
  • conformation (C2′-endo), base pair inclination, and helical rise resembled B-DNA [39]. The first X-ray crystal structure of a PNA–DNA–PNA triplex revealed a previously unknown helix with a wide diameter of ≈26 Å (compared to 20 Å for A-form duplex) and a wide and deep major groove (Figure 3), given the name "P
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Published 19 Jul 2021

Synthesis of functionalized imidazo[4,5-e]thiazolo[3,2-b]triazines by condensation of imidazo[4,5-e]triazinethiones with DMAD or DEAD and rearrangement to imidazo[4,5-e]thiazolo[2,3-c]triazines

  • Alexei N. Izmest’ev,
  • Dmitry B. Vinogradov,
  • Natalya G. Kolotyrkina,
  • Angelina N. Kravchenko and
  • Galina A. Gazieva

Beilstein J. Org. Chem. 2021, 17, 1141–1148, doi:10.3762/bjoc.17.87

Graphical Abstract
  • further transformations in basic media, are continuing. Biologically active compounds having thiazolidin-4-one and thiazolo-1,2,4-triazine units. 1H NMR spectra of compounds 4h and 5h in DMSO-d6 in the region of 3.5–8.8 ppm. X-ray crystal structure of compound 5i. Regioselectivity of the cyclization of 3
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Published 14 May 2021

α,γ-Dioxygenated amides via tandem Brook rearrangement/radical oxygenation reactions and their application to syntheses of γ-lactams

  • Mikhail K. Klychnikov,
  • Radek Pohl,
  • Ivana Císařová and
  • Ullrich Jahn

Beilstein J. Org. Chem. 2021, 17, 688–704, doi:10.3762/bjoc.17.58

Graphical Abstract
  • /EtOAc 10:1 to 1:1) to give keto lactam 13. Selected alkaloids containing the pyrrolidone motif. X-ray crystal structure of the major (2R,4S)-alkoxyamine hydrochloride derived from 9j. Displacement ellipsoids at 30% probability level and a disordered CHCl3 solvent molecule is not shown for clarity. X-ray
  • crystal structure of the minor cis-diastereomers of the keto lactam 13j (left) and the hydroxy lactam 12k (right). Displacement ellipsoids are drawn at the 30% probability level. A) Classical γ-lactam synthesis by atom transfer radical cyclizations; B) previously developed tandem epoxide opening/Brook
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Published 09 Mar 2021

Synthesis, structural characterization, and optical properties of benzo[f]naphtho[2,3-b]phosphoindoles

  • Mio Matsumura,
  • Takahiro Teramoto,
  • Masato Kawakubo,
  • Masatoshi Kawahata,
  • Yuki Murata,
  • Kentaro Yamaguchi,
  • Masanobu Uchiyama and
  • Shuji Yasuike

Beilstein J. Org. Chem. 2021, 17, 671–677, doi:10.3762/bjoc.17.56

Graphical Abstract
  • and LUMO levelsb of phospholes. Supporting Information Supporting Information File 224: Further analytical and experimental data. Supporting Information File 225: X-ray crystal structure of 2. Supporting Information File 226: X-ray crystal structure of N-phenyldibenzocarbazole. Acknowledgements This
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Letter
Published 05 Mar 2021

Amino- and polyaminophthalazin-1(2H)-ones: synthesis, coordination properties, and biological activity

  • Zbigniew Malinowski,
  • Emilia Fornal,
  • Agata Sumara,
  • Renata Kontek,
  • Karol Bukowski,
  • Beata Pasternak,
  • Dariusz Sroczyński,
  • Joachim Kusz,
  • Magdalena Małecka and
  • Monika Nowak

Beilstein J. Org. Chem. 2021, 17, 558–568, doi:10.3762/bjoc.17.50

Graphical Abstract
  • and 424.3 Da for 65Cu followed the same fragmentation pattern for both ions. The proposal of the fragmentation pathway, based on the X-ray crystal structure of the Cu(II) complex with 7 (L3) (Figure 4, vide infra), is shown in Scheme 3. The MS/MS fragmentation analysis of the [(L3)Cu(II)Cl]+ complex 8
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Published 25 Feb 2021

19F NMR as a tool in chemical biology

  • Diana Gimenez,
  • Aoife Phelan,
  • Cormac D. Murphy and
  • Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

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Published 28 Jan 2021

Access to highly substituted oxazoles by the reaction of α-azidochalcone with potassium thiocyanate

  • Mysore Bhyrappa Harisha,
  • Pandi Dhanalakshmi,
  • Rajendran Suresh,
  • Raju Ranjith Kumar and
  • Shanmugam Muthusubramanian

Beilstein J. Org. Chem. 2020, 16, 2108–2118, doi:10.3762/bjoc.16.178

Graphical Abstract
  • ) using ethyl acetate/petroleum ether mixture to afford product 4. Examples of biologically active oxazole and aminothiazole scaffolds. Large-scale synthesis of 3i. a) At the start of the reaction, b) after the reaction. ORTEP diagram of compound 5. X-ray crystal structure of 4h. Strategies for the
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Published 31 Aug 2020

Isolation and structure determination of a tetrameric sulfonyl dilithio methandiide in solution based on crystal structure analysis and 6Li/13C NMR spectroscopic data

  • Jürgen Vollhardt,
  • Hans Jörg Lindner and
  • Hans-Joachim Gais

Beilstein J. Org. Chem. 2020, 16, 2057–2063, doi:10.3762/bjoc.16.172

Graphical Abstract
  • and sulfonyl-substituted dilithio methandiide 2a [14][15]. The use of n-BuLi, inadvertently containing Li2O, had yielded prismatic crystals of 2a. An X-ray crystal structure analysis had shown a Ci symmetric hexamer, (2a)6·Li2O·(THF)6, the dianionic C atoms of which are each coordinated by two Li
  • mixture of THF and n-hexane with Li2O-free n-BuLi (1.88 equiv) in n-hexane at −90 °C followed by warming the solution to room temperature gave octahedral crystals of 2a. The use of two equivalents of the base led two a slower crystal growth. The X-ray crystal structure analysis showed a chiral C2
  • atoms and not between orbitals. A similar conclusion was reached in the case of the dilithio methandiides IIIa and IIIb. Conclusion The determination of the structure of tetramer 2a-I in both the solution and solid state, which is the first of a dilithio methandiide, was achieved based on X-ray crystal
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Published 21 Aug 2020

Controlling the stereochemistry in 2-oxo-aldehyde-derived Ugi adducts through the cinchona alkaloid-promoted electrophilic fluorination

  • Yuqing Wang,
  • Gaigai Wang,
  • Anatoly A. Peshkov,
  • Ruwei Yao,
  • Muhammad Hasan,
  • Manzoor Zaman,
  • Chao Liu,
  • Stepan Kashtanov,
  • Olga P. Pereshivko and
  • Vsevolod A. Peshkov

Beilstein J. Org. Chem. 2020, 16, 1963–1973, doi:10.3762/bjoc.16.163

Graphical Abstract
  • asymmetric electrophilic fluorination for derivatizing the 2-oxo-aldehyde-derived Ugi adducts. This allowed us to obtain the post-Ugi products fluorinated at the peptidyl position with the enantiomeric excess values in several instances reaching more than 70%. Molecular representation of the X-ray crystal
  • structure of (S)-12e (slow enantiomer). Post-transformations of 2-oxo-aldehyde-derived Ugi adducts 8. Synthesis of 2-oxo-aldehyde-derived Ugi adducts. Asymmetric protocols for Passerini three-component reaction (P-3CR). Asymmetric protocols for Ugi four-component reaction (U-4CR) by Houk, Tan and co-workers
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Published 11 Aug 2020

Microwave-assisted efficient one-pot synthesis of N2-(tetrazol-5-yl)-6-aryl/heteroaryl-5,6-dihydro-1,3,5-triazine-2,4-diamines

  • Moustafa Sherief Moustafa,
  • Ramadan Ahmed Mekheimer,
  • Saleh Mohammed Al-Mousawi,
  • Mohamed Abd-Elmonem,
  • Hesham El-Zorba,
  • Afaf Mohamed Abdel Hameed,
  • Tahany Mahmoud Mohamed and
  • Kamal Usef Sadek

Beilstein J. Org. Chem. 2020, 16, 1706–1712, doi:10.3762/bjoc.16.142

Graphical Abstract
  • and are uncorrected. X-ray crystallographic structure determinations were performed by using Rigaku Rapid II and Bruker X8 Prospector single crystal X-ray diffractometers. The X-ray crystal structure data can be obtained free of charge from the Cambridge Crystallographic Data Centre via http
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Published 16 Jul 2020

Fluorohydration of alkynes via I(I)/I(III) catalysis

  • Jessica Neufeld,
  • Constantin G. Daniliuc and
  • Ryan Gilmour

Beilstein J. Org. Chem. 2020, 16, 1627–1635, doi:10.3762/bjoc.16.135

Graphical Abstract
  • Hammett analyses, have identified key determinants that are essential for reaction efficiency. X-ray crystal structure analysis of ketone 2 reveals a dihedral angle of φO=C-C-F = −3.7°. Although the origin of this specificity requires clarification, this fluorohydration reaction constitutes a rare case of
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Published 10 Jul 2020

NHC-catalyzed enantioselective synthesis of β-trifluoromethyl-β-hydroxyamides

  • Alyn T. Davies,
  • Mark D. Greenhalgh,
  • Alexandra M. Z. Slawin and
  • Andrew D. Smith

Beilstein J. Org. Chem. 2020, 16, 1572–1578, doi:10.3762/bjoc.16.129

Graphical Abstract
  • support. dMolecular representation of the X-ray crystal structure of 12. The unit cell of 12 contained two molecules of 12, with only one shown for clarity. Proposed mechanism. Optimization of the NHC-catalyzed formal [2 + 2] cycoaddition.a Supporting Information Supporting Information File 335
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Letter
Published 30 Jun 2020

One-step route to tricyclic fused 1,2,3,4-tetrahydroisoquinoline systems via the Castagnoli–Cushman protocol

  • Aleksandar Pashev,
  • Nikola Burdzhiev and
  • Elena Stanoeva

Beilstein J. Org. Chem. 2020, 16, 1456–1464, doi:10.3762/bjoc.16.121

Graphical Abstract
  • recrystallization. Compounds comprising a benzo[a]quinolizidine ring system. Representative NOE interactions in cis and trans-21–24 (only one enantiomer is shown). X-ray crystal structure of products 25 and 26. Representative NOE interactions in 28 and 29. Reactions between enolizable anhydrides and imines
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Published 24 Jun 2020

Synthesis of C70-fragment buckybowls bearing alkoxy substituents

  • Yumi Yakiyama,
  • Shota Hishikawa and
  • Hidehiro Sakurai

Beilstein J. Org. Chem. 2020, 16, 681–690, doi:10.3762/bjoc.16.66

Graphical Abstract
  • succeeded in synthesizing three different alkoxy-substituted C70-fragment buckybowls 5a–c. In particular, 5c was not an intended molecule, but was formed unexpectedly through the rearrangement through the Pd-catalyzed C–H bond activation reaction. The X-ray crystal structure analysis of 5a–c clearly
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Published 15 Apr 2020

Synthesis of organic liquid crystals containing selectively fluorinated cyclopropanes

  • Zeguo Fang,
  • Nawaf Al-Maharik,
  • Peer Kirsch,
  • Matthias Bremer,
  • Alexandra M. Z. Slawin and
  • David O’Hagan

Beilstein J. Org. Chem. 2020, 16, 674–680, doi:10.3762/bjoc.16.65

Graphical Abstract
  • an essentially isoenergetic conformer is that found in the X-ray crystal structure. The first conformers where the terminal bispirocyclohexane ring lies axial are significantly higher in energy (ΔG = +1.25 kcal/mol−1 and ΔG = +1.19 kcal/mol−1) than the equatorial conformers as illustrated in Figure 3
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Published 14 Apr 2020

Synthesis and herbicidal activities of aryloxyacetic acid derivatives as HPPD inhibitors

  • Man-Man Wang,
  • Hao Huang,
  • Lei Shu,
  • Jian-Min Liu,
  • Jian-Qiu Zhang,
  • Yi-Le Yan and
  • Da-Yong Zhang

Beilstein J. Org. Chem. 2020, 16, 233–247, doi:10.3762/bjoc.16.25

Graphical Abstract
  • /methanol to afford a colorless transparent crystal. It crystallized in the monoclinic space group: P–1 (2), cell: a = 5.191(5) Å, b = 12.133(12) Å, c = 13.576(14) Å, α = 80.141(13)°, β = 81.978(12)°, γ = 79.496(12)°, temperature: 296 K. X-ray crystal structure of compound I18 and III4 are shown in Figure 3
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Published 19 Feb 2020

Synthesis of 4-(2-fluorophenyl)-7-methoxycoumarin: experimental and computational evidence for intramolecular and intermolecular C–F···H–C bonds

  • Vuyisa Mzozoyana,
  • Fanie R. van Heerden and
  • Craig Grimmer

Beilstein J. Org. Chem. 2020, 16, 190–199, doi:10.3762/bjoc.16.22

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  • . Comparison of some features of the X-ray crystal structure and DFT optimized structure of 6: Through-space (TS) and dihedral angle (Φ). Supporting Information Supporting Information File 220: Copies of NMR spectra for compound 3, 5 and 6, single crystal X-ray data for compound 6, Gaussian calculation data
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Published 10 Feb 2020

Palladium-catalyzed synthesis and nucleotide pyrophosphatase inhibition of benzo[4,5]furo[3,2-b]indoles

  • Hoang Huy Do,
  • Saif Ullah,
  • Alexander Villinger,
  • Joanna Lecka,
  • Jean Sévigny,
  • Peter Ehlers,
  • Jamshed Iqbal and
  • Peter Langer

Beilstein J. Org. Chem. 2019, 15, 2830–2839, doi:10.3762/bjoc.15.276

Graphical Abstract
  • % (Table 2). Consequently, our newly optimized conditions allowed the synthesis of products 5h–j in moderate to good yields (Table 2). The structure of 5c was independently confirmed by X-ray crystal structure analysis. Figure 2 shows the planar benzofuroindol core structure with an orthogonally oriented
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Published 22 Nov 2019

1,5-Phosphonium betaines from N-triflylpropiolamides, triphenylphosphane, and active methylene compounds

  • Vito A. Fiore,
  • Chiara Freisler and
  • Gerhard Maas

Beilstein J. Org. Chem. 2019, 15, 2603–2611, doi:10.3762/bjoc.15.253

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  • Information Supporting Information File 640: Experimental procedures, characterization data, NMR spectra (1H, 13C, 31P, 19F) and IR spectra for the synthesized compounds, and data for the X-ray crystal structure determinations.
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Published 01 Nov 2019

Reversible switching of arylazopyrazole within a metal–organic cage

  • Anton I. Hanopolskyi,
  • Soumen De,
  • Michał J. Białek,
  • Yael Diskin-Posner,
  • Liat Avram,
  • Moran Feller and
  • Rafal Klajn

Beilstein J. Org. Chem. 2019, 15, 2398–2407, doi:10.3762/bjoc.15.232

Graphical Abstract
  • , Supporting Information File 1). Front view (a) and side view (b) of the X-ray crystal structure of (E-1)22 (major conformations of 1 and 2; see also Supporting Information File 1, Figures S15 and S16). The horizontal plane (pink) denotes the positions of eight equatorial imidazole groups; four axial
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Published 10 Oct 2019
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